pycom08g02800

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000746
Physical Location & Seq
Reverse (-)
2037127 .. 2037957
831 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g02800.2

Sequence Viewer

Length: 642 bp
ATGCTTTATTATTATTGTTGTTGTAGTCCTTCAATTGTATTATGTTGTTGTCTTGTAGATATAAGTGAGTTGAACATGCCAGAAGAATGCAAGATTTCATTCCCCAGTGGAAAGGATGATTTGATGGACTTTGAGATCACCATTACACCTTATCGGGGATATTATATGGGTGGTGGGTTTGTCTTCACATTTAAAGTTCCCGCAGTCTACCCTCACGAGCCTCCGAAGGTCAAGTGCAAAACCAAGATCTACCATCCCAACATCGACTTAGAAGGAAACACTTGCCTTAACATTCTTCGGGAAGACTGGAAACCTGTCTTGAATATAAACACTGTTATTTACGGATTGTATCACCTATTCACGGTATCTCTAATCATAACGTTAAATATATTTCGTGACCCCAAACAAATTATCCGTTCTTTTTATGCTAGGTTTTATTTGGATGTGTACCTTTTGTGGACTCAAATCCTTAGTTTCTTAATGCAGGAACCTAACCATGAGGACCCCTTGAATCAAGAAGCAGCAGATCTTTTGAGGGACAATCCAAAATTGTTCGGATTGAACGTGAGAAAATCGATCGAGGGAAACATATGGGTCGGAGGCGCCCATTTCCCTGGGTGCAAAACAGGCGACTTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

214

Amino Acids

24.64

Weight (kDa)

5.72

Isoelectric Point (pI)

54.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 602
AccI GTMKAC 1 cut(s) 207
AciI CCGC 1 cut(s) 201
AclI AACGTT 1 cut(s) 380
AcyI GRCGYC 1 cut(s) 603
AfaI GTAC 1 cut(s) 449
AfiI CCNNNNNNNGG 2 cut(s) 155, 361
AgsI TTSAA 5 cut(s) 33, 73, 322, 511, 562
AjnI CCWGG 1 cut(s) 613
ApeKI GCWGC 1 cut(s) 521
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 130, 344
AvaII GGWCC 1 cut(s) 502
BanI GGYRCC 1 cut(s) 602
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 175, 309
BbvI GCAGC 1 cut(s) 533
BccI CCATC 2 cut(s) 118, 261
BciT130I CCWGG 1 cut(s) 615
BfaI CTAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 606
BglII AGATCT 2 cut(s) 246, 526
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 615
Bme18I GGWCC 1 cut(s) 502
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 3 cut(s) 489, 504, 604
BmrFI CCNGG 1 cut(s) 615
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
BpiI GAAGAC 2 cut(s) 175, 309
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 613, 614
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 361
Bse1I ACTGG 2 cut(s) 105, 311
BseBI CCWGG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 613, 614
BseGI GGATG 3 cut(s) 121, 253, 448
BseLI CCNNNNNNNGG 2 cut(s) 155, 361
BseNI ACTGG 2 cut(s) 105, 311
BseXI GCAGC 1 cut(s) 533
Bsh1285I CGRYCG 1 cut(s) 579
BshNI GGYRCC 1 cut(s) 602
BshVI ATCGAT 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 551
BslI CCNNNNNNNGG 2 cut(s) 155, 361
BsmFI GGGAC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 92
Bsp143I GATC 4 cut(s) 135, 246, 526, 576
BspACI CCGC 1 cut(s) 201
BspDI ATCGAT 1 cut(s) 575
BspLI GGNNCC 3 cut(s) 489, 504, 604
BspT107I GGYRCC 1 cut(s) 602
BsrI ACTGG 2 cut(s) 105, 311
BssECI CCNNGG 2 cut(s) 613, 614
BssMI GATC 4 cut(s) 135, 246, 526, 576
BssNI GRCGYC 1 cut(s) 603
BssSI CACGAG 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 2 cut(s) 334, 364
BstACI GRCGYC 1 cut(s) 603
BstDEI CTNAG 2 cut(s) 268, 470
BstF5I GGATG 3 cut(s) 121, 253, 448
BstH2I RGCGCY 1 cut(s) 606
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 4 cut(s) 138, 249, 529, 579
BstMBI GATC 4 cut(s) 135, 246, 526, 576
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 1 cut(s) 627
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 79
BstSCI CCNGG 1 cut(s) 613
BstV1I GCAGC 1 cut(s) 533
BstV2I GAAGAC 2 cut(s) 175, 309
BstX2I RGATCY 2 cut(s) 246, 526
BstXI CCANNNNNNTGG 1 cut(s) 614
BstYI RGATCY 2 cut(s) 246, 526
Bsu15I ATCGAT 1 cut(s) 575
BsuTUI ATCGAT 1 cut(s) 575
BtsCI GGATG 3 cut(s) 121, 253, 448
BtsIMutI CAGTG 2 cut(s) 112, 330
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 502
ClaI ATCGAT 1 cut(s) 575
Csp6I GTAC 1 cut(s) 448
CviAII CATG 2 cut(s) 76, 497
CviJI RGCY 1 cut(s) 220
CviKI_1 RGCY 1 cut(s) 220
CviQI GTAC 1 cut(s) 448
DdeI CTNAG 2 cut(s) 268, 470
DinI GGCGCC 1 cut(s) 604
DpnI GATC 4 cut(s) 137, 248, 528, 578
DpnII GATC 4 cut(s) 135, 246, 526, 576
DraI TTTAAA 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 502
EcoO109I RGGNCCY 1 cut(s) 502
EcoRII CCWGG 1 cut(s) 613
EgeI GGCGCC 1 cut(s) 604
EheI GGCGCC 1 cut(s) 604
FaeI CATG 2 cut(s) 79, 500
FaqI GGGAC 1 cut(s) 551
FatI CATG 2 cut(s) 75, 496
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 1 cut(s) 590
FblI GTMKAC 1 cut(s) 207
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 3 cut(s) 128, 240, 455
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 1 cut(s) 429
GlaI GCGC 1 cut(s) 604
GluI GCNGC 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 606
HhaI GCGC 1 cut(s) 605
Hin1I GRCGYC 1 cut(s) 603
Hin1II CATG 2 cut(s) 79, 500
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HinfI GANTC 2 cut(s) 460, 511
HphI GGTGA 2 cut(s) 130, 344
Hpy166II GTNNAC 3 cut(s) 208, 448, 459
Hpy188I TCNGA 3 cut(s) 225, 557, 599
Hpy188III TCNNGA 5 cut(s) 215, 299, 319, 395, 515
Hpy8I GTNNAC 3 cut(s) 208, 448, 459
HpyAV CCTTC 3 cut(s) 39, 220, 266
HpyCH4III ACNGT 2 cut(s) 334, 364
HpyCH4IV ACGT 2 cut(s) 380, 564
HpyCH4V TGCA 4 cut(s) 90, 237, 484, 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 627
HpyF3I CTNAG 2 cut(s) 268, 470
HpySE526I ACGT 2 cut(s) 380, 564
Hsp92I GRCGYC 1 cut(s) 603
Hsp92II CATG 2 cut(s) 79, 500
HspAI GCGC 1 cut(s) 603
KasI GGCGCC 1 cut(s) 602
Kzo9I GATC 4 cut(s) 135, 246, 526, 576
LpnPI CCDG 8 cut(s) 93, 118, 292, 327, 470, 600, 612, 627
Lsp1109I GCAGC 1 cut(s) 533
MaeI CTAG 1 cut(s) 429
MaeII ACGT 2 cut(s) 380, 564
MaeIII GTNAC 1 cut(s) 395
MalI GATC 4 cut(s) 137, 248, 528, 578
MboI GATC 4 cut(s) 135, 246, 526, 576
MboII GAAGA 4 cut(s) 95, 175, 287, 314
MfeI CAATTG 1 cut(s) 33
MflI RGATCY 2 cut(s) 246, 526
MluCI AATT 3 cut(s) 33, 408, 548
Mly113I GGCGCC 1 cut(s) 603
MlyI GAGTC 1 cut(s) 454
MmeI TCCRAC 1 cut(s) 577
MnlI CCTC 6 cut(s) 222, 231, 493, 528, 574, 593
MseI TTAA 4 cut(s) 192, 288, 383, 479
MspR9I CCNGG 1 cut(s) 615
MunI CAATTG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 92
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 1 cut(s) 627
NarI GGCGCC 1 cut(s) 603
NdeI CATATG 1 cut(s) 590
NdeII GATC 4 cut(s) 135, 246, 526, 576
NlaIII CATG 2 cut(s) 79, 500
NlaIV GGNNCC 3 cut(s) 489, 504, 604
NmuCI GTSAC 1 cut(s) 395
NspI RCATGY 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 614
PcsI WCGNNNNNNNCGW 1 cut(s) 561
PctI GAATGC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 511
PkrI GCNGC 1 cut(s) 523
Ple19I CGATCG 1 cut(s) 579
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 606
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 502
Psp1406I AACGTT 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 502
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 489, 504, 604
PspPI GGNCC 1 cut(s) 502
PspPPI RGGWCCY 1 cut(s) 502
PsuI RGATCY 2 cut(s) 246, 526
PvuI CGATCG 1 cut(s) 579
RsaI GTAC 1 cut(s) 449
RsaNI GTAC 1 cut(s) 448
SaqAI TTAA 4 cut(s) 192, 288, 383, 479
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 4 cut(s) 135, 246, 526, 576
Sau96I GGNCC 1 cut(s) 502
SchI GAGTC 1 cut(s) 454
ScrFI CCNGG 1 cut(s) 615
SetI ASST 9 cut(s) 151, 231, 316, 357, 383, 434, 453, 493, 567
SfoI GGCGCC 1 cut(s) 604
SinI GGWCC 1 cut(s) 502
Sse9I AATT 3 cut(s) 33, 408, 548
SsiI CCGC 1 cut(s) 201
SspDI GGCGCC 1 cut(s) 602
SspMI CTAG 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 2 cut(s) 334, 364
TaiI ACGT 2 cut(s) 383, 567
TaqI TCGA 3 cut(s) 264, 575, 579
TasI AATT 3 cut(s) 33, 408, 548
TfiI GAWTC 1 cut(s) 511
Tru1I TTAA 4 cut(s) 192, 288, 383, 479
Tru9I TTAA 4 cut(s) 192, 288, 383, 479
TscAI CASTG 2 cut(s) 112, 337
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 1 cut(s) 87
TspGWI ACGGA 2 cut(s) 357, 404
TspRI CASTG 2 cut(s) 112, 337
VpaK11BI GGWCC 1 cut(s) 502
XceI RCATGY 1 cut(s) 79
XmiI GTMKAC 1 cut(s) 207
XspI CTAG 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.