Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Forward (+)

18068608 .. 18070881

Gene Structure 2274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G010460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATTAAGCTATTTAAAGTGAAGGAAAAGCAGAGGGAGCTTGCTGAAAATGCCAATGGAAAGACACCAGTTAAGAAGCAAAGTGCAGGAGAATTACGACTTCATAGAGATATTAGTGAGCTGAACCTACAGAAAACATGTACCATAGCATTCCCCAATGGTAAGGACGATTTAATGAACTTTGAGGTTACCGTCCGGCCTGATGAAGGATACTATCTAGGCGGTACATTTATGTTCACATTTCAAGTTTCTCCCATGTACCCTCATGAGGCGCCAAAGGTCAAGTGCAAGACCAAGGTCTATCATCCTAATATTGACTTGGAAGGAAACGTCTGCCTCAACATTCTAAGAGAAGACTGGAAACCTGTTTTGAATATCAATACTATAATATACGGACTCTTTCATCTTTTTACGCAACCCAATTATGAAGATCCCCTTAATCATGATGCAGCTGCTGTCCTAAGGGATAACCCCAAGATGTTTGAGTCCAATGTGAGAAGAGCTATGTCTGGTGGGTATGTGGGGCAGACCTTATTCCCGCGGTGCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

183

Amino Acids

21.01

Weight (kDa)

8.61

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	33 - 168	1.6e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccII	CGCG	1 cut(s)	541
AciI	CCGC	3 cut(s)	222, 539, 541
AclWI	GGATC	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	272
AfaI	GTAC	3 cut(s)	142, 226, 260
AfiI	CCNNNNNNNGG	2 cut(s)	206, 268
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	245, 373
AluBI	AGCT	5 cut(s)	10, 40, 121, 452, 503
AluI	AGCT	5 cut(s)	10, 40, 121, 452, 503
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	455
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	449, 452
AspLEI	GCGC	1 cut(s)	274
AxyI	CCTNAGG	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	439, 461
BciVI	GTATCC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	203
BisI	GCNGC	2 cut(s)	450, 453
BlsI	GCNGC	2 cut(s)	451, 454
BmiI	GGNNCC	1 cut(s)	273
BmsI	GCATC	1 cut(s)	436
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	294, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 268
Bse1I	ACTGG	2 cut(s)	68, 362
Bse21I	CCTNAGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	294, 539
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	2 cut(s)	206, 268
BseNI	ACTGG	2 cut(s)	68, 362
BseXI	GCAGC	2 cut(s)	439, 461
BsgI	GTGCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	199
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	196
BslI	CCNNNNNNNGG	2 cut(s)	206, 268
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	199
Bsp143I	GATC	1 cut(s)	430
BspACI	CCGC	3 cut(s)	222, 539, 541
BspANI	GGCC	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	541
BspHI	TCATGA	2 cut(s)	265, 442
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	1 cut(s)	425
BspQI	GCTCTTC	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	271
BsrI	ACTGG	2 cut(s)	68, 362
BssECI	CCNNGG	2 cut(s)	294, 539
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	272
BssT1I	CCWWGG	1 cut(s)	294
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	1 cut(s)	493
BstACI	GRCGYC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	2 cut(s)	347, 461
BstDSI	CCRYGG	1 cut(s)	539
BstEII	GGTNACC	1 cut(s)	187
BstENI	CCTNNNNNAGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	1 cut(s)	541
BstH2I	RGCGCY	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 50
BstNSI	RCATGY	2 cut(s)	141, 550
BstPAI	GACNNNNGTC	1 cut(s)	296
BstPI	GGTNACC	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	128
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	2 cut(s)	439, 461
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
Bsu36I	CCTNAGG	1 cut(s)	461
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	539
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	455
CciI	TCATGA	2 cut(s)	265, 442
CfoI	GCGC	1 cut(s)	274
Cfr42I	CCGCGG	1 cut(s)	542
Csp6I	GTAC	3 cut(s)	141, 225, 259
CviAII	CATG	5 cut(s)	138, 256, 266, 443, 547
CviJI	RGCY	6 cut(s)	10, 40, 121, 199, 452, 503
CviKI_1	RGCY	6 cut(s)	10, 40, 121, 199, 452, 503
CviQI	GTAC	3 cut(s)	141, 225, 259
DdeI	CTNAG	2 cut(s)	347, 461
DinI	GGCGCC	1 cut(s)	273
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	493
EarI	CTCTTC	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	461
Eco91I	GGTNACC	1 cut(s)	187
EcoNI	CCTNNNNNAGG	1 cut(s)	204
EcoO65I	GGTNACC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	273
EheI	GGCGCC	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	141, 259, 269, 446, 550
FalI	AAGNNNNNCTT	2 cut(s)	420, 452
FatI	CATG	5 cut(s)	137, 255, 265, 442, 546
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	450, 453
FokI	GGATG	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	450, 453
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	2 cut(s)	450, 453
HaeII	RGCGCY	1 cut(s)	275
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	272
Hin1II	CATG	5 cut(s)	141, 259, 269, 446, 550
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	2 cut(s)	396, 485
HpaII	CCGG	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188III	TCNNGA	2 cut(s)	266, 443
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	3 cut(s)	16, 200, 317
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	86, 288, 449, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 50
HpyF3I	CTNAG	2 cut(s)	347, 461
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	272
Hsp92II	CATG	5 cut(s)	141, 259, 269, 446, 550
HspAI	GCGC	1 cut(s)	272
KasI	GGCGCC	1 cut(s)	271
KspI	CCGCGG	1 cut(s)	542
Kzo9I	GATC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	493
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	7 cut(s)	72, 81, 209, 213, 343, 378, 495
Lsp1109I	GCAGC	2 cut(s)	439, 461
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	3 cut(s)	365, 440, 510
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	2 cut(s)	92, 421
Mly113I	GGCGCC	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	390, 494
MnlI	CCTC	5 cut(s)	27, 178, 262, 273, 347
MseI	TTAA	5 cut(s)	6, 15, 72, 173, 438
MspA1I	CMGCKG	2 cut(s)	452, 541
MspI	CCGG	1 cut(s)	196
Mva1269I	GAATGC	1 cut(s)	149
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	37, 50
NarI	GGCGCC	1 cut(s)	272
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	5 cut(s)	141, 259, 269, 446, 550
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	2 cut(s)	141, 550
PagI	TCATGA	2 cut(s)	265, 442
PciI	ACATGT	1 cut(s)	137
PciSI	GCTCTTC	1 cut(s)	493
PctI	GAATGC	1 cut(s)	149
PkrI	GCNGC	2 cut(s)	451, 454
PleI	GAGTC	2 cut(s)	390, 493
PluTI	GGCGCC	1 cut(s)	275
PpsI	GAGTC	2 cut(s)	390, 493
PscI	ACATGT	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	296
PspEI	GGTNACC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	273
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	452
RsaI	GTAC	3 cut(s)	142, 226, 260
RsaNI	GTAC	3 cut(s)	141, 225, 259
SacII	CCGCGG	1 cut(s)	542
SapI	GCTCTTC	1 cut(s)	493
SaqAI	TTAA	5 cut(s)	6, 15, 72, 173, 438
SatI	GCNGC	2 cut(s)	450, 453
Sau3AI	GATC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	390, 494
SfaNI	GCATC	1 cut(s)	436
SfcI	CTRYAG	1 cut(s)	128
SfoI	GGCGCC	1 cut(s)	273
Sfr303I	CCGCGG	1 cut(s)	542
SgrBI	CCGCGG	1 cut(s)	542
Sse9I	AATT	2 cut(s)	92, 421
SsiI	CCGC	3 cut(s)	222, 539, 541
SspDI	GGCGCC	1 cut(s)	271
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	218
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	333
TasI	AATT	2 cut(s)	92, 421
Tru1I	TTAA	5 cut(s)	6, 15, 72, 173, 438
Tru9I	TTAA	5 cut(s)	6, 15, 72, 173, 438
TseI	GCWGC	2 cut(s)	449, 452
TspDTI	ATGAA	5 cut(s)	92, 191, 219, 392, 441
TspGWI	ACGGA	1 cut(s)	408
XagI	CCTNNNNNAGG	1 cut(s)	204
XceI	RCATGY	2 cut(s)	141, 550
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.