Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000746

Physical Location & Seq

Genomic Coordinates Reverse (-)

17340932 .. 17343035

Gene Structure 2104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G36800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGATTGGGTTGTTTAAAGTAAAGGAAAAGCAAAGAGAACAAGCTCAAAATGCTACTAGAGGAGGAGCTTCTGTTAAGAAGCAATCTGCTGGCGAACTTCGTCTTCACAAAGATATATCAGAGTTGAACCTTCCTAGCTCTTGTTCAATATCTTTTCCAAATGGCAAAGATGATTTGATGAACTTTGAAGTATCCATTAAACCTGATGATGGATATTACCACAATGGTACGTTTGTTTTCACATTCCAAGTCTCTCCTGTGTATCCACATGAAGCTCCAAAAGTTAAATGCAAAACCAAGGTTTATCATCCCAATATCGATTTGGAAGGAAACGTTTGCCTGAACATCTTGCGTGAAGATTGGAAACCTGTTCTTAACATTAACACAGTTATCTACGGACTCTTCCATCTGTTCACGGAACCCAATTCTGAAGATCCCTTGAACCATGATGCTGCAGCAGTTTTGAGGGATAACCCAAAGCTCTTTGAGACCAATGTTCGCAGGGCCATGACCGGTGGATATGTCGGTCAGACCTTTTTCCCGCGTTGTATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0016740 GO:0019538 GO:0019787 GO:0019788 GO:0032446 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045116 GO:0050896 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

7.7

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	34 - 169	4.1e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18600 AT2G18600 AT4G36800 AT4G36800
fragaria_vesca	FvH4_1g14060 FvH4_1g14060 FvH4_2g08220 FvH4_2g40180 FvH4_2g40180 FvH4_2g40311
malus_domestica	MD00G1139500.v1.1 MD00G1139700.v1.1 MD00G1184500.v1.1 MD00G1192300.v1.1 MD00G1193200.v1.1 MD00G1203300.v1.1 MD00G1205100.v1.1 MD00G1205500.v1.1 MD00G1214900.v1.1 MD01G1124700.v1.1 MD02G1154200.v1.1 MD02G1154300.v1.1 MD08G1035500.v1.1 MD15G1268600.v1.1 MD15G1268900.v1.1 MD17G1186300.v1.1
prunus_persica	Prupe.1G383000_v2.0.a1 Prupe.1G383000_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.7G148800_v2.0.a1 Prupe.8G102500_v2.0.a1
pyrus_communis	pycom02g12180 pycom02g12190 pycom08g02800 pycom15g23340
rosa_chinensis	RchiOBHm_Chr2g0102661 RchiOBHm_Chr6g0263031 RchiOBHm_Chr6g0300421 RchiOBHm_Chr6g0300551
rosa_laevigata	RLG00000011325 RLG00000011339 RLG00000014385 RLG00000017160
rosa_multiflora	Rmu_sc0000596.1_g000075 Rmu_sc0003852.1_g000018 Rmu_sc0029369.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140410 Rroxscaffold_7G00167680 Rroxscaffold_7G00204790
rosa_rugosa	Rorug02G0108400 Rorug02G0108500 Rorug06G0002700 Rorug06G0297000 Rorug06G0297100
rosa_samantha	Rh2AG157200 Rh2BG163500 Rh2CG162700 Rh2DG162400 Rh6AG121500 Rh6AG408600 Rh6AG409600 Rh6BG416800 Rh6CG113700 Rh6CG424500 Rh6DG408900 Rh6DG410100
rosa_wichuraiana	Rw2G012200 Rw6G010460 Rw6G035740 Rw6G035840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	544
AciI	CCGC	1 cut(s)	542
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	1 cut(s)	428
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	4 cut(s)	127, 147, 188, 442
AluBI	AGCT	5 cut(s)	44, 68, 138, 275, 481
AluI	AGCT	5 cut(s)	44, 68, 138, 275, 481
Alw26I	GTCTC	2 cut(s)	256, 482
AlwI	GGATC	1 cut(s)	428
AoxI	GGCC	1 cut(s)	504
ApeKI	GCWGC	2 cut(s)	452, 455
AsiGI	ACCGGT	1 cut(s)	512
AspS9I	GGNCC	1 cut(s)	504
BaeI	ACNNNNGTAYC	2 cut(s)	219, 252
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	439, 467
BccI	CCATC	2 cut(s)	203, 414
BciVI	GTATCC	2 cut(s)	202, 273
BcoDI	GTCTC	2 cut(s)	256, 482
BfaI	CTAG	2 cut(s)	57, 135
BfmI	CTRYAG	1 cut(s)	453
BfuI	GTATCC	2 cut(s)	202, 273
BisI	GCNGC	2 cut(s)	453, 456
BlsI	GCNGC	2 cut(s)	454, 457
BmgT120I	GGNCC	1 cut(s)	504
BmiI	GGNNCC	1 cut(s)	420
BmsI	GCATC	1 cut(s)	439
BpiI	GAAGAC	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	318
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse118I	RCCGGY	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseRI	GAGGAG	2 cut(s)	75, 78
BseXI	GCAGC	2 cut(s)	439, 467
Bsh1236I	CGCG	1 cut(s)	544
BshFI	GGCC	1 cut(s)	506
BshTI	ACCGGT	1 cut(s)	512
BshVI	ATCGAT	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	2 cut(s)	256, 482
BsnI	GGCC	1 cut(s)	506
Bso31I	GGTCTC	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	433
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	1 cut(s)	506
BspDI	ATCGAT	1 cut(s)	318
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	420
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	512
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	1 cut(s)	433
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	91
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	544
BstKTI	GATC	1 cut(s)	436
BstMAI	GTCTC	2 cut(s)	256, 482
BstMBI	GATC	1 cut(s)	433
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	453
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	2 cut(s)	439, 467
BstV2I	GAAGAC	1 cut(s)	95
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu15I	ATCGAT	1 cut(s)	318
BsuI	GTATCC	2 cut(s)	202, 273
BsuRI	GGCC	1 cut(s)	506
BsuTUI	ATCGAT	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	1 cut(s)	504
ClaI	ATCGAT	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	228
CspAI	ACCGGT	1 cut(s)	512
CviAII	CATG	3 cut(s)	269, 446, 508
CviJI	RGCY	6 cut(s)	44, 68, 138, 275, 481, 506
CviKI_1	RGCY	6 cut(s)	44, 68, 138, 275, 481, 506
CviQI	GTAC	1 cut(s)	228
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
DraI	TTTAAA	1 cut(s)	16
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	482
Eco57I	CTGAAG	1 cut(s)	450
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	272, 449, 511
FaiI	YATR	5 cut(s)	116, 270, 447, 509, 522
FatI	CATG	3 cut(s)	268, 445, 507
FauI	CCCGC	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	453, 456
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	453, 456
FspBI	CTAG	2 cut(s)	57, 135
GluI	GCNGC	2 cut(s)	453, 456
HaeIII	GGCC	1 cut(s)	506
HapII	CCGG	1 cut(s)	513
Hin1II	CATG	3 cut(s)	272, 449, 511
HinfI	GANTC	1 cut(s)	399
HpaII	CCGG	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	3 cut(s)	121, 430, 531
Hpy8I	GTNNAC	1 cut(s)	414
HpyAV	CCTTC	2 cut(s)	140, 320
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	2 cut(s)	230, 333
HpyCH4V	TGCA	2 cut(s)	291, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpySE526I	ACGT	2 cut(s)	230, 333
Hsp92II	CATG	3 cut(s)	272, 449, 511
Kzo9I	GATC	1 cut(s)	433
LmnI	GCTCC	2 cut(s)	65, 280
LpnPI	CCDG	7 cut(s)	75, 216, 270, 353, 381, 487, 526
Lsp1109I	GCAGC	2 cut(s)	439, 467
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	57, 135
MaeII	ACGT	2 cut(s)	230, 333
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MboII	GAAGA	4 cut(s)	95, 368, 394, 443
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	1 cut(s)	424
MlyI	GAGTC	1 cut(s)	393
MnlI	CCTC	3 cut(s)	53, 56, 459
MseI	TTAA	6 cut(s)	15, 75, 198, 285, 375, 381
MspI	CCGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	3 cut(s)	272, 449, 511
NlaIV	GGNNCC	1 cut(s)	420
PinAI	ACCGGT	1 cut(s)	512
PkrI	GCNGC	2 cut(s)	454, 457
PleI	GAGTC	1 cut(s)	393
PpsI	GAGTC	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	333
PspN4I	GGNNCC	1 cut(s)	420
PspPI	GGNCC	1 cut(s)	504
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SaqAI	TTAA	6 cut(s)	15, 75, 198, 285, 375, 381
SatI	GCNGC	2 cut(s)	453, 456
Sau3AI	GATC	1 cut(s)	433
Sau96I	GGNCC	1 cut(s)	504
SchI	GAGTC	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	453
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	1 cut(s)	542
SspMI	CTAG	2 cut(s)	57, 135
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	2 cut(s)	233, 336
TaqI	TCGA	1 cut(s)	318
TaqII	GACCGA	1 cut(s)	515
TasI	AATT	1 cut(s)	424
Tru1I	TTAA	6 cut(s)	15, 75, 198, 285, 375, 381
Tru9I	TTAA	6 cut(s)	15, 75, 198, 285, 375, 381
TseI	GCWGC	2 cut(s)	452, 455
TspDTI	ATGAA	2 cut(s)	194, 285
TspGWI	ACGGA	2 cut(s)	411, 431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XspI	CTAG	2 cut(s)	57, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.