Rmu_sc0029369.1_g000001

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029369.1
OG0000746
Physical Location & Seq
Reverse (-)
54 .. 1465
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029369.1_g000001.1.cds

Sequence Viewer

Length: 627 bp
atgatcaggttattcaaagtgaaggaaaagcaacaggaagttgtagacaatgcaaaggagaagggaacagtcaagaagcaaagtgcaggggaattacgtgttcaaagagatataactgagttgaacctgccaaattcaattagcatagcattccccaatggacaagatgatctgatgaactttgaggtcaccattgaacctgatgaagggtttctcttcacatttgaagttaccccagtctatcctcatgaagcaccaaaggtcaagtgcgaaacaaaggtactcacacctaagttgcttctttactgggattctatcaattttccagctgatttgagtatgctgcaaagcattttacgcacatacgtctatcatccaaacattgatttggaagggaatatctgccttaacattcttcgtgaagattggaaacctgtcctcaatataagtactgttatttatggattgtattacctattcacgcaaccaaattatgaagatcctttgaatcatgaggcagctgatgttttgagggataatccagagacgttcgaatcaaatgtgaaaagggcaattgctggtgatcaatggattggaagtacctatttccctaaaccggatttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

208

Amino Acids

23.99

Weight (kDa)

4.82

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AccI GTMKAC 1 cut(s) 45
AclWI GGATC 1 cut(s) 494
AcsI RAATTY 1 cut(s) 133
AfaI GTAC 3 cut(s) 282, 451, 601
AfiI CCNNNNNNNGG 2 cut(s) 206, 616
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 7 cut(s) 16, 104, 124, 138, 197, 227, 508
AluBI AGCT 2 cut(s) 329, 521
AluI AGCT 2 cut(s) 329, 521
Alw26I GTCTC 1 cut(s) 539
AlwI GGATC 1 cut(s) 494
ApeKI GCWGC 2 cut(s) 343, 518
ApoI RAATTY 1 cut(s) 133
Asp700I GAANNNNTTC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 181, 593
AsuII TTCGAA 1 cut(s) 552
BbvI GCAGC 2 cut(s) 330, 530
BclI TGATCA 2 cut(s) 3, 583
BcoDI GTCTC 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 2 cut(s) 344, 519
BlsI GCNGC 2 cut(s) 345, 520
BmcAI AGTACT 1 cut(s) 451
BmrI ACTGGG 2 cut(s) 230, 316
BmuI ACTGGG 2 cut(s) 230, 316
Bpu14I TTCGAA 1 cut(s) 552
BsaAI YACGTR 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 616
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 616
Bse1I ACTGG 2 cut(s) 236, 311
BseGI GGATG 1 cut(s) 373
BseLI CCNNNNNNNGG 2 cut(s) 206, 616
BseMII CTCAG 1 cut(s) 108
BseNI ACTGG 2 cut(s) 236, 311
BseXI GCAGC 2 cut(s) 330, 530
BsgI GTGCAG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 617
BslI CCNNNNNNNGG 2 cut(s) 206, 616
BsmAI GTCTC 1 cut(s) 539
BsmBI CGTCTC 1 cut(s) 539
BsmI GAATGC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 552
Bsp143I GATC 4 cut(s) 3, 169, 499, 583
BspCNI CTCAG 1 cut(s) 109
BspHI TCATGA 2 cut(s) 247, 511
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 494
BspT104I TTCGAA 1 cut(s) 552
BsrI ACTGG 2 cut(s) 236, 311
BssMI GATC 4 cut(s) 3, 169, 499, 583
Bst4CI ACNGT 2 cut(s) 70, 454
Bst6I CTCTTC 1 cut(s) 221
BstBAI YACGTR 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 552
BstDEI CTNAG 2 cut(s) 117, 291
BstEII GGTNACC 1 cut(s) 187
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 1 cut(s) 373
BstKTI GATC 4 cut(s) 6, 172, 502, 586
BstMAI GTCTC 1 cut(s) 539
BstMBI GATC 4 cut(s) 3, 169, 499, 583
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 330, 530
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BtsCI GGATG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 135
CciI TCATGA 2 cut(s) 247, 511
Csp6I GTAC 3 cut(s) 281, 450, 600
CviAII CATG 2 cut(s) 248, 512
CviJI RGCY 2 cut(s) 329, 521
CviKI_1 RGCY 2 cut(s) 329, 521
CviQI GTAC 3 cut(s) 281, 450, 600
DdeI CTNAG 2 cut(s) 117, 291
DpnI GATC 4 cut(s) 5, 171, 501, 585
DpnII GATC 4 cut(s) 3, 169, 499, 583
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 187
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoO65I GGTNACC 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 539
FaeI CATG 2 cut(s) 251, 515
FaiI YATR 9 cut(s) 113, 146, 249, 341, 364, 446, 462, 495, 513
FatI CATG 2 cut(s) 247, 511
FbaI TGATCA 2 cut(s) 3, 583
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 344, 519
FokI GGATG 1 cut(s) 360
Fsp4HI GCNGC 2 cut(s) 344, 519
GluI GCNGC 2 cut(s) 344, 519
HapII CCGG 1 cut(s) 617
Hin1II CATG 2 cut(s) 251, 515
HinfI GANTC 3 cut(s) 311, 508, 554
HpaII CCGG 1 cut(s) 617
HphI GGTGA 2 cut(s) 181, 593
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 5 cut(s) 73, 248, 419, 512, 542
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 4 cut(s) 16, 55, 200, 386
HpyCH4III ACNGT 2 cut(s) 70, 454
HpyCH4IV ACGT 3 cut(s) 97, 366, 548
HpyCH4V TGCA 3 cut(s) 53, 86, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 117, 291
HpySE526I ACGT 3 cut(s) 97, 366, 548
Hsp92II CATG 2 cut(s) 251, 515
Ksp22I TGATCA 2 cut(s) 3, 583
Kzo9I GATC 4 cut(s) 3, 169, 499, 583
Lsp1109I GCAGC 2 cut(s) 330, 530
MaeII ACGT 3 cut(s) 97, 366, 548
MaeIII GTNAC 2 cut(s) 187, 229
MalI GATC 4 cut(s) 5, 171, 501, 585
MboI GATC 4 cut(s) 3, 169, 499, 583
MboII GAAGA 4 cut(s) 208, 407, 434, 509
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 1 cut(s) 499
MluCI AATT 6 cut(s) 92, 133, 138, 319, 490, 573
MnlI CCTC 5 cut(s) 178, 255, 449, 508, 525
MroXI GAANNNNTTC 1 cut(s) 210
MseI TTAA 1 cut(s) 408
MspA1I CMGCKG 2 cut(s) 329, 521
MspI CCGG 1 cut(s) 617
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 4 cut(s) 3, 169, 499, 583
NlaIII CATG 2 cut(s) 251, 515
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 552
PagI TCATGA 2 cut(s) 247, 511
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 311, 508, 554
PkrI GCNGC 2 cut(s) 345, 520
Ppu21I YACGTR 1 cut(s) 98
PspEI GGTNACC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 2 cut(s) 329, 521
RsaI GTAC 3 cut(s) 282, 451, 601
RsaNI GTAC 3 cut(s) 281, 450, 600
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 2 cut(s) 344, 519
Sau3AI GATC 4 cut(s) 3, 169, 499, 583
ScaI AGTACT 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 552
Sse9I AATT 6 cut(s) 92, 133, 138, 319, 490, 573
TaaI ACNGT 2 cut(s) 70, 454
TaiI ACGT 3 cut(s) 100, 369, 551
TaqI TCGA 1 cut(s) 552
TasI AATT 6 cut(s) 92, 133, 138, 319, 490, 573
TatI WGTACW 1 cut(s) 449
TfiI GAWTC 3 cut(s) 311, 508, 554
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 2 cut(s) 343, 518
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 191, 219, 264, 510
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 1 cut(s) 133
XmiI GTMKAC 1 cut(s) 45
XmnI GAANNNNTTC 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.