AT2G45990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000506
Physical Location & Seq
Forward (+)
18919316 .. 18921511
2196 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45990.3

Sequence Viewer

Length: 807 bp
ATGGGAGATCTCTACGCTTTGGACTTCGATGGAGTTCTCTGTGATAGTTGTGGAGAAAGCTCTCTATCTGCTGTTAAGGCAGCCAAAGTGAGATGGCCTGATTTGTTCGAAGGAGTTGATTCCGCTTTAGAGGAATGGATCGTCGATCAAATGCATATTGTGAGACCTGTGGTTGAAACTGGCTATGAAAATCTTCTACTTGTGCGGCTGTTATTGGAGACCAAGATACCGTCTATTCGAAAATCTTCAGTTGCAGAGGGGTTGACGGTTGATGGGATACTGGAGAGCTGGGCAAAGTTTAAGCCCGTGATCATGGAAGCTTGGGATGAAGATAGAGATGCTTTGGTAGATTTGTTTGGAAAAGTTAGAGATGATTGGATTAACAAGGACTTGACAACTTGGATTGGTGCCAATAGATTCTACCCAGGAGTTTCAGATGCACTGAAATTTGCCAGCTCAAAGATTTATATCGTTACCACGAAACAGGGCCGCTTTGCAGAAGCGTTACTGCGTGAAATAGCAGGTGTAATCATACCATCAGAAAGGATTTATGGTTTGGGTTCAGGGCCAAAGGTGGAAGTTCTAAAGCTACTTCAAGATAAACCAGAACATCAGGGCTTGACGCTGCATTTCGTGGAAGACAGACTCGCAACGCTGAAAAATGTCATAAAAGAGCCTGAATTAGACAAATGGAGTTTATACCTAGGAACCTGGGGATACAACACTGAGAAAGAGAGAGCTGAAGCAGCAGGCATTCCCAGGATTCAGGTTATTGAGCTCTCCACGTTTAGCAATAAGCTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.11

Weight (kDa)

5.05

Isoelectric Point (pI)

26.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 512
Acc36I ACCTGC 1 cut(s) 512
AccB1I GGYRCC 1 cut(s) 407
AciI CCGC 3 cut(s) 123, 205, 490
AclWI GGATC 1 cut(s) 146
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 2 cut(s) 231, 762
AgsI TTSAA 2 cut(s) 176, 596
AjnI CCWGG 3 cut(s) 424, 710, 758
AluBI AGCT 8 cut(s) 60, 288, 320, 456, 589, 740, 778, 799
AluI AGCT 8 cut(s) 60, 288, 320, 456, 589, 740, 778, 799
Alw21I GWGCWC 1 cut(s) 780
Alw26I GTCTC 2 cut(s) 157, 212
AlwI GGATC 1 cut(s) 146
AoxI GGCC 3 cut(s) 95, 487, 566
ApeKI GCWGC 3 cut(s) 80, 625, 746
ApoI RAATTY 1 cut(s) 446
Asp700I GAANNNNTTC 2 cut(s) 192, 244
AspA2I CCTAGG 1 cut(s) 703
AspS9I GGNCC 2 cut(s) 487, 566
AsuII TTCGAA 2 cut(s) 108, 238
AvrII CCTAGG 1 cut(s) 703
BanI GGYRCC 1 cut(s) 407
BanII GRGCYC 1 cut(s) 780
BbsI GAAGAC 1 cut(s) 645
Bbv12I GWGCWC 1 cut(s) 780
BbvI GCAGC 3 cut(s) 92, 612, 758
BccI CCATC 4 cut(s) 23, 87, 266, 544
BciT130I CCWGG 3 cut(s) 426, 712, 760
BciVI GTATCC 2 cut(s) 270, 710
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 157, 212
BfaI CTAG 1 cut(s) 704
BfuAI ACCTGC 1 cut(s) 512
BfuI GTATCC 2 cut(s) 270, 710
BglII AGATCT 1 cut(s) 7
BisI GCNGC 5 cut(s) 81, 206, 490, 626, 747
BlnI CCTAGG 1 cut(s) 703
BlsI GCNGC 5 cut(s) 82, 207, 491, 627, 748
Bme1390I CCNGG 3 cut(s) 426, 712, 760
BmgT120I GGNCC 2 cut(s) 487, 566
BmiI GGNNCC 2 cut(s) 409, 709
BmrFI CCNGG 3 cut(s) 426, 712, 760
BmsI GCATC 2 cut(s) 328, 427
BpiI GAAGAC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 302
Bpu14I TTCGAA 2 cut(s) 108, 238
BsaBI GATNNNNATC 1 cut(s) 467
BsaI GGTCTC 2 cut(s) 157, 212
BsaJI CCNNGG 4 cut(s) 424, 703, 711, 758
Bse1I ACTGG 2 cut(s) 184, 285
Bse8I GATNNNNATC 1 cut(s) 467
BseBI CCWGG 3 cut(s) 426, 712, 760
BseDI CCNNGG 4 cut(s) 424, 703, 711, 758
BseGI GGATG 1 cut(s) 331
BseJI GATNNNNATC 1 cut(s) 467
BseMII CTCAG 1 cut(s) 717
BseNI ACTGG 2 cut(s) 184, 285
BseXI GCAGC 3 cut(s) 92, 612, 758
BseYI CCCAGC 1 cut(s) 288
BshFI GGCC 3 cut(s) 97, 489, 568
BshNI GGYRCC 1 cut(s) 407
BsiHKAI GWGCWC 1 cut(s) 780
BsmAI GTCTC 2 cut(s) 157, 212
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 3 cut(s) 97, 489, 568
Bso31I GGTCTC 2 cut(s) 157, 212
Bsp119I TTCGAA 2 cut(s) 108, 238
Bsp1286I GDGCHC 1 cut(s) 780
Bsp143I GATC 4 cut(s) 7, 138, 145, 309
BspACI CCGC 3 cut(s) 123, 205, 490
BspANI GGCC 3 cut(s) 97, 489, 568
BspCNI CTCAG 1 cut(s) 718
BspLI GGNNCC 2 cut(s) 409, 709
BspMI ACCTGC 1 cut(s) 512
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 2 cut(s) 108, 238
BspT107I GGYRCC 1 cut(s) 407
BspTNI GGTCTC 2 cut(s) 157, 212
BsrI ACTGG 2 cut(s) 184, 285
BssECI CCNNGG 4 cut(s) 424, 703, 711, 758
BssMI GATC 4 cut(s) 7, 138, 145, 309
BssT1I CCWWGG 1 cut(s) 703
Bst2UI CCWGG 3 cut(s) 426, 712, 760
Bst4CI ACNGT 2 cut(s) 231, 268
BstBI TTCGAA 2 cut(s) 108, 238
BstC8I GCNNGC 2 cut(s) 454, 751
BstDEI CTNAG 1 cut(s) 726
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 4 cut(s) 10, 141, 148, 312
BstMAI GTCTC 2 cut(s) 157, 212
BstMBI GATC 4 cut(s) 7, 138, 145, 309
BstMWI GCNNNNNNNGC 2 cut(s) 77, 746
BstNI CCWGG 3 cut(s) 426, 712, 760
BstSCI CCNGG 3 cut(s) 424, 710, 758
BstV1I GCAGC 3 cut(s) 92, 612, 758
BstV2I GAAGAC 1 cut(s) 645
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 2 cut(s) 270, 710
BsuRI GGCC 3 cut(s) 97, 489, 568
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 2 cut(s) 440, 723
BveI ACCTGC 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 454, 751
Cfr13I GGNCC 2 cut(s) 487, 566
CseI GACGC 1 cut(s) 631
CviAII CATG 1 cut(s) 313
DdeI CTNAG 1 cut(s) 726
DpnI GATC 4 cut(s) 9, 140, 147, 311
DpnII GATC 4 cut(s) 7, 138, 145, 309
Ecl136II GAGCTC 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 780
Eco31I GGTCTC 2 cut(s) 157, 212
Eco53kI GAGCTC 1 cut(s) 778
Eco57I CTGAAG 2 cut(s) 231, 762
EcoICRI GAGCTC 1 cut(s) 778
EcoRII CCWGG 3 cut(s) 424, 710, 758
EcoT14I CCWWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 780
ErhI CCWWGG 1 cut(s) 703
FaeI CATG 1 cut(s) 316
FaiI YATR 8 cut(s) 156, 186, 314, 468, 533, 552, 668, 700
FatI CATG 1 cut(s) 312
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 81, 206, 490, 626, 747
FokI GGATG 1 cut(s) 338
FriOI GRGCYC 1 cut(s) 780
Fsp4HI GCNGC 5 cut(s) 81, 206, 490, 626, 747
FspBI CTAG 1 cut(s) 704
GluI GCNGC 5 cut(s) 81, 206, 490, 626, 747
GsaI CCCAGC 1 cut(s) 292
GsuI CTGGAG 1 cut(s) 302
HaeIII GGCC 3 cut(s) 97, 489, 568
HgaI GACGC 1 cut(s) 631
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HindIII AAGCTT 2 cut(s) 318, 797
HinfI GANTC 4 cut(s) 119, 417, 645, 763
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 436, 541
Hpy188III TCNNGA 1 cut(s) 596
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 231, 268
HpyCH4IV ACGT 1 cut(s) 785
HpyCH4V TGCA 5 cut(s) 154, 254, 440, 497, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 746
HpyF3I CTNAG 1 cut(s) 726
HpySE526I ACGT 1 cut(s) 785
Hsp92II CATG 1 cut(s) 316
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 4 cut(s) 7, 138, 145, 309
Lsp1109I GCAGC 3 cut(s) 92, 612, 758
LweI GCATC 2 cut(s) 328, 427
MaeI CTAG 1 cut(s) 704
MaeII ACGT 1 cut(s) 785
MaeIII GTNAC 2 cut(s) 472, 504
MalI GATC 4 cut(s) 9, 140, 147, 311
MboI GATC 4 cut(s) 7, 138, 145, 309
MboII GAAGA 4 cut(s) 185, 237, 341, 650
MflI RGATCY 1 cut(s) 7
MhlI GDGCHC 1 cut(s) 780
MluCI AATT 2 cut(s) 446, 680
MlyI GAGTC 1 cut(s) 639
MnlI CCTC 2 cut(s) 124, 250
Mph1103I ATGCAT 1 cut(s) 156
MroXI GAANNNNTTC 2 cut(s) 192, 244
MseI TTAA 4 cut(s) 75, 300, 381, 801
MspR9I CCNGG 3 cut(s) 426, 712, 760
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 3 cut(s) 426, 712, 760
MwoI GCNNNNNNNGC 2 cut(s) 77, 746
NdeII GATC 4 cut(s) 7, 138, 145, 309
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 2 cut(s) 409, 709
NsiI ATGCAT 1 cut(s) 156
NspV TTCGAA 2 cut(s) 108, 238
PaqCI CACCTGC 1 cut(s) 512
PctI GAATGC 1 cut(s) 753
PdmI GAANNNNTTC 2 cut(s) 192, 244
PfeI GAWTC 3 cut(s) 119, 417, 763
PkrI GCNGC 5 cut(s) 82, 207, 491, 627, 748
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 780
Psp6I CCWGG 3 cut(s) 424, 710, 758
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 3 cut(s) 424, 710, 758
PspN4I GGNNCC 2 cut(s) 409, 709
PspPI GGNCC 2 cut(s) 487, 566
PsuI RGATCY 1 cut(s) 7
SacI GAGCTC 1 cut(s) 780
SaqAI TTAA 4 cut(s) 75, 300, 381, 801
SatI GCNGC 5 cut(s) 81, 206, 490, 626, 747
Sau3AI GATC 4 cut(s) 7, 138, 145, 309
Sau96I GGNCC 2 cut(s) 487, 566
SchI GAGTC 1 cut(s) 639
ScrFI CCNGG 3 cut(s) 426, 712, 760
SduI GDGCHC 1 cut(s) 780
SfaNI GCATC 2 cut(s) 328, 427
SfuI TTCGAA 2 cut(s) 108, 238
Sse9I AATT 2 cut(s) 446, 680
SsiI CCGC 3 cut(s) 123, 205, 490
SspMI CTAG 1 cut(s) 704
SstI GAGCTC 1 cut(s) 780
StyD4I CCNGG 3 cut(s) 424, 710, 758
StyI CCWWGG 1 cut(s) 703
TaaI ACNGT 2 cut(s) 231, 268
TaiI ACGT 1 cut(s) 788
TaqI TCGA 4 cut(s) 27, 108, 144, 238
TasI AATT 2 cut(s) 446, 680
TauI GCSGC 2 cut(s) 208, 492
TfiI GAWTC 3 cut(s) 119, 417, 763
Tru1I TTAA 4 cut(s) 75, 300, 381, 801
Tru9I TTAA 4 cut(s) 75, 300, 381, 801
TscAI CASTG 2 cut(s) 447, 730
TseI GCWGC 3 cut(s) 80, 625, 746
TspDTI ATGAA 2 cut(s) 201, 342
TspRI CASTG 2 cut(s) 447, 730
XapI RAATTY 1 cut(s) 446
XmaJI CCTAGG 1 cut(s) 703
XmnI GAANNNNTTC 2 cut(s) 192, 244
XspI CTAG 1 cut(s) 704
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.