Rh1DG028400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000506
Physical Location & Seq
Reverse (-)
4284981 .. 4286240
1260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG028400.1

Sequence Viewer

Length: 597 bp
ATGGGGGATTTGTACGCTTTGGATTTCGACGGAGTTCTGTGCGATAGCTGCGGAGAGAGCTATGCCACTGCTGCCAAGGCTGCTAAAGTGATATGGCCAACGCTATTCAACGATGTGGATTCAAGTTTAGAGGATTGGGTTGTTGATCAAATCCGCATCGTGCGACCTGTGCTGCAAAACTGGTATGACAATCTTCTACTTGTGAGGTTACTTTTGGAAATGAGGCTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAAGGGATAGTGGAGAATTGGTCAGGGTTAAGCAATCTGATTTTGAAGGAATGGGGTGAGGATAAGGATGCTCTTGTAAAATTATATTTCCAGGTCAGGGATGAGTGGAAGGTTCAGGACTTGAAAACTTGGATTGGTACAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACGTCAATCATTTACATTGTCACTGGGAAACAGGTGTGGATCTTACACAAGCATTCATTTTGTTTTGGCATAATTTCCAAAATATTTCTGAAACTTGATTATAATTGTCAATCTACACTTCAAATGTCTAATTACAAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.6

Weight (kDa)

5.43

Isoelectric Point (pI)

23.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 555
AciI CCGC 2 cut(s) 51, 154
AclWI GGATC 1 cut(s) 500
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 2 cut(s) 14, 409
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 5 cut(s) 109, 123, 316, 394, 575
AjnI CCWGG 2 cut(s) 360, 424
AluBI AGCT 2 cut(s) 48, 60
AluI AGCT 2 cut(s) 48, 60
AlwI GGATC 1 cut(s) 500
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 48, 71, 80, 172
AsuHPI GGTGA 1 cut(s) 338
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 35, 58, 67, 159
BciT130I CCWGG 2 cut(s) 362, 426
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 1 cut(s) 145
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 4 cut(s) 49, 72, 81, 173
BlsI GCNGC 4 cut(s) 50, 73, 82, 174
Bme1390I CCNGG 2 cut(s) 362, 426
BmrFI CCNGG 2 cut(s) 362, 426
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 165, 328, 427
BmuI ACTGGG 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 2 cut(s) 185, 481
BseBI CCWGG 2 cut(s) 362, 426
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 343, 376
BseLI CCNNNNNNNGG 1 cut(s) 367
BseNI ACTGG 2 cut(s) 185, 481
BseXI GCAGC 4 cut(s) 35, 58, 67, 159
BshFI GGCC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 367
BsmI GAATGC 1 cut(s) 505
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 2 cut(s) 145, 492
BspACI CCGC 2 cut(s) 51, 154
BspANI GGCC 1 cut(s) 97
BspPI GGATC 1 cut(s) 500
BsrI ACTGG 2 cut(s) 185, 481
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 2 cut(s) 145, 492
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 362, 426
Bst4CI ACNGT 1 cut(s) 268
BstF5I GGATG 2 cut(s) 343, 376
BstKTI GATC 2 cut(s) 148, 495
BstMBI GATC 2 cut(s) 145, 492
BstMWI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 169
BstNI CCWGG 2 cut(s) 362, 426
BstSCI CCNGG 2 cut(s) 360, 424
BstV1I GCAGC 4 cut(s) 35, 58, 67, 159
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 343, 376
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 474
Csp6I GTAC 2 cut(s) 13, 408
CviJI RGCY 6 cut(s) 48, 60, 80, 97, 226, 262
CviKI_1 RGCY 6 cut(s) 48, 60, 80, 97, 226, 262
CviQI GTAC 2 cut(s) 13, 408
DpnI GATC 2 cut(s) 147, 494
DpnII GATC 2 cut(s) 145, 492
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 360, 424
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 7 cut(s) 63, 94, 186, 236, 355, 524, 555
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 49, 72, 81, 173
FokI GGATG 2 cut(s) 350, 383
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 4 cut(s) 49, 72, 81, 173
GluI GCNGC 4 cut(s) 49, 72, 81, 173
HaeIII GGCC 1 cut(s) 97
HinfI GANTC 1 cut(s) 119
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 309, 543
Hpy188III TCNNGA 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 240, 251, 266, 310, 373
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 455
HpyCH4V TGCA 2 cut(s) 175, 254
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 169
HpySE526I ACGT 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 145, 492
Lsp1109I GCAGC 4 cut(s) 35, 58, 67, 159
LweI GCATC 3 cut(s) 165, 328, 427
MaeII ACGT 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 207, 472
MalI GATC 2 cut(s) 147, 494
MboI GATC 2 cut(s) 145, 492
MboII GAAGA 1 cut(s) 185
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 6 cut(s) 286, 350, 525, 556, 583, 592
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 4 cut(s) 124, 198, 216, 322
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 3 cut(s) 299, 444, 595
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 362, 426
Mva1269I GAATGC 1 cut(s) 505
MvaI CCWGG 2 cut(s) 362, 426
MwoI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 169
NdeII GATC 2 cut(s) 145, 492
NmuCI GTSAC 1 cut(s) 472
PctI GAATGC 1 cut(s) 505
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 4 cut(s) 50, 73, 82, 174
PsiI TTATAA 1 cut(s) 555
Psp6I CCWGG 2 cut(s) 360, 424
PspGI CCWGG 2 cut(s) 360, 424
PsuI RGATCY 1 cut(s) 492
RsaI GTAC 2 cut(s) 14, 409
RsaNI GTAC 2 cut(s) 13, 408
SaqAI TTAA 3 cut(s) 299, 444, 595
SatI GCNGC 4 cut(s) 49, 72, 81, 173
Sau3AI GATC 2 cut(s) 145, 492
ScrFI CCNGG 2 cut(s) 362, 426
SduI GDGCHC 1 cut(s) 264
SetI ASST 9 cut(s) 50, 62, 169, 209, 366, 384, 430, 458, 489
SfaNI GCATC 3 cut(s) 165, 328, 427
Sse9I AATT 6 cut(s) 286, 350, 525, 556, 583, 592
SsiI CCGC 2 cut(s) 51, 154
SspI AATATT 1 cut(s) 537
StyD4I CCNGG 2 cut(s) 360, 424
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 458
TaqI TCGA 1 cut(s) 27
TasI AATT 6 cut(s) 286, 350, 525, 556, 583, 592
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 299, 444, 595
Tru9I TTAA 3 cut(s) 299, 444, 595
TscAI CASTG 2 cut(s) 73, 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 48, 71, 80, 172
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 498
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 73, 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.