Rroxscaffold_4G00299810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000506
Physical Location & Seq
Reverse (-)
19750651 .. 19752568
1918 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299810.1

Sequence Viewer

Length: 780 bp
ATGGGTGATCTATACGCTTTGGATTTCGATGGAGTTATCTGTGATAGCTGCGGAGAAAGCTCTCTATCTGCCCTGAAGGCTGCTAAAATCAGATGGCCAGCTCTGTTCAACGGTGTGGATTCAACTTTGGAGAATTGGGTTCTTGATCAAATGCGCATAGTGAGACCTGTGGTGGAAACTGGGTATGAGAATCTTTTACTTGTGAGGTTACTTCTGGAGATGAGGGTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACAGTGGAAGGGATATTGGAGAAGTGGTCAGAGTTGAAGCCTGTGATTATGAAGGAATGGGGTGAGGACAGGGATGGTCTTATAGATCTGTTTGGGAAGGTTAGGGATGAATGGATGGAACAGGACTTGAAAACTTGGATCGGTGCAAATAGATTATATCCAGGTGTCCCTGATGCTCTAAAATTCACAAGCTCTACCATATACGTTGTCACTACGAAACAGAGCAGATTTGCTGACGCTTTATTGCGAGAACTAGCCGGAGTTACAATACCGCCTGAAAGAATCTTTGGTCTTGGATCTGGTCCAAAGCTTTTGGAGGATAGACTGGCAACCCTAAAGAATGTCATCAGAGAACCTGAATTGGATGGCTGGAATTTGTATCTAGCTTTTGTTGCTAATTTGGGTTTTGAATTAGGGGATTGGGGGTACAATACACAGAAAGAGAGAGACGAAGCTGCTAGAATTCCAAGGATTCAGATTCTTCAGCTTTCTGACTTTAGTAAGAAGCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.28

Weight (kDa)

5.04

Isoelectric Point (pI)

25.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AciI CCGC 2 cut(s) 51, 536
AclWI GGATC 2 cut(s) 410, 568
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 3 cut(s) 446, 637, 726
AcuI CTGAAG 2 cut(s) 95, 731
AfaI GTAC 1 cut(s) 692
AgsI TTSAA 5 cut(s) 109, 123, 301, 394, 674
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 9 cut(s) 48, 60, 101, 456, 574, 650, 719, 751, 772
AluI AGCT 9 cut(s) 48, 60, 101, 456, 574, 650, 719, 751, 772
Alw26I GTCTC 2 cut(s) 157, 705
AlwI GGATC 2 cut(s) 410, 568
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 48, 80, 719
ApoI RAATTY 3 cut(s) 446, 637, 726
AspLEI GCGC 1 cut(s) 156
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 17, 338
AvaII GGWCC 1 cut(s) 566
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 35, 67, 706
BccI CCATC 5 cut(s) 23, 87, 332, 373, 623
BciT130I CCWGG 1 cut(s) 426
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 157, 705
BfaI CTAG 3 cut(s) 518, 647, 723
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 349
BisI GCNGC 3 cut(s) 49, 81, 720
BlsI GCNGC 3 cut(s) 50, 82, 721
Bme1390I CCNGG 1 cut(s) 426
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 758
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 2 cut(s) 184, 594
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 731
BseGI GGATG 4 cut(s) 343, 376, 384, 634
BseNI ACTGG 2 cut(s) 184, 594
BseXI GCAGC 3 cut(s) 35, 67, 706
BshFI GGCC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 522
BslFI GGGAC 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 157, 705
BsmBI CGTCTC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 416
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 5 cut(s) 7, 145, 349, 402, 560
BspACI CCGC 2 cut(s) 51, 536
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 2 cut(s) 410, 568
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 184, 594
BssECI CCNNGG 1 cut(s) 731
BssMI GATC 5 cut(s) 7, 145, 349, 402, 560
BssT1I CCWWGG 1 cut(s) 731
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 113, 268
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 4 cut(s) 343, 376, 384, 634
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 5 cut(s) 10, 148, 352, 405, 563
BstMAI GTCTC 2 cut(s) 157, 705
BstMBI GATC 5 cut(s) 7, 145, 349, 402, 560
BstMWI GCNNNNNNNGC 3 cut(s) 57, 77, 656
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 3 cut(s) 35, 67, 706
BstX2I RGATCY 2 cut(s) 349, 560
BstYI RGATCY 2 cut(s) 349, 560
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 4 cut(s) 343, 376, 384, 634
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 509
Csp6I GTAC 1 cut(s) 691
CviQI GTAC 1 cut(s) 691
DpnI GATC 5 cut(s) 9, 147, 351, 404, 562
DpnII GATC 5 cut(s) 7, 145, 349, 402, 560
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 566
Eco57I CTGAAG 2 cut(s) 95, 731
EcoRI GAATTC 1 cut(s) 726
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 731
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 731
Esp3I CGTCTC 1 cut(s) 705
FaiI YATR 9 cut(s) 13, 158, 186, 236, 314, 347, 421, 464, 466
FaqI GGGAC 1 cut(s) 416
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 49, 81, 720
FokI GGATG 4 cut(s) 350, 383, 391, 641
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 3 cut(s) 49, 81, 720
FspAI RTGCGCAY 1 cut(s) 155
FspBI CTAG 3 cut(s) 518, 647, 723
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
GluI GCNGC 3 cut(s) 49, 81, 720
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 522
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 5 cut(s) 119, 190, 546, 736, 742
HpaII CCGG 1 cut(s) 522
HphI GGTGA 2 cut(s) 17, 338
Hpy188I TCNGA 5 cut(s) 92, 295, 614, 741, 757
Hpy188III TCNNGA 2 cut(s) 143, 215
HpyAV CCTTC 6 cut(s) 70, 240, 251, 266, 310, 355
HpyCH4III ACNGT 2 cut(s) 113, 268
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 2 cut(s) 254, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 77, 656
HpySE526I ACGT 1 cut(s) 468
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 5 cut(s) 7, 145, 349, 402, 560
Lsp1109I GCAGC 3 cut(s) 35, 67, 706
LweI GCATC 1 cut(s) 427
MaeI CTAG 3 cut(s) 518, 647, 723
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 3 cut(s) 207, 472, 526
MalI GATC 5 cut(s) 9, 147, 351, 404, 562
MboI GATC 5 cut(s) 7, 145, 349, 402, 560
MboII GAAGA 1 cut(s) 737
MflI RGATCY 2 cut(s) 349, 560
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 7 cut(s) 133, 446, 623, 637, 661, 674, 726
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 4 cut(s) 198, 216, 322, 574
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 522
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 3 cut(s) 57, 77, 656
NdeII GATC 5 cut(s) 7, 145, 349, 402, 560
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 472
NsbI TGCGCA 1 cut(s) 155
PfeI GAWTC 5 cut(s) 119, 190, 546, 736, 742
PkrI GCNGC 3 cut(s) 50, 82, 721
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 1 cut(s) 566
PsuI RGATCY 2 cut(s) 349, 560
RsaI GTAC 1 cut(s) 692
RsaNI GTAC 1 cut(s) 691
SatI GCNGC 3 cut(s) 49, 81, 720
Sau3AI GATC 5 cut(s) 7, 145, 349, 402, 560
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 7 cut(s) 133, 446, 623, 637, 661, 674, 726
SsiI CCGC 2 cut(s) 51, 536
SspMI CTAG 3 cut(s) 518, 647, 723
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 1 cut(s) 731
TaaI ACNGT 2 cut(s) 113, 268
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 27
TasI AATT 7 cut(s) 133, 446, 623, 637, 661, 674, 726
TfiI GAWTC 5 cut(s) 119, 190, 546, 736, 742
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 48, 80, 719
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 329, 387
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 3 cut(s) 446, 637, 726
XspI CTAG 3 cut(s) 518, 647, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.