Rh1BG231200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000506
Physical Location & Seq
Forward (+)
35350139 .. 35350626
488 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG231200.1

Sequence Viewer

Length: 285 bp
ATGACGATATCTCCAATTCGCCAAGAGAGCAAATCGGAAAAGAATCCACATTACAAACGACCTGAACGACGTCGCAGAAAACGAAAAGGACGAAACTTGGGGCAAGAAGTCTACACCCTCTTCCAATGTCAACCCACCACTCCACCAGAGATCCAGGTGGAGATGATGAACCAGCATTCCGGACCGGCTTTCGGCTTACGGACTCGGTGGATTATAGACGCCATGTCGTTTGGGACCAAAACTAATTCAATCCAATTTCCACAAGCTGTGGAGAAGAATAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.03

Weight (kDa)

10.48

Isoelectric Point (pI)

76.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 179
AclWI GGATC 1 cut(s) 145
AcyI GRCGYC 2 cut(s) 70, 219
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 249
AhdI GACNNNNNGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 153
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
AlwI GGATC 1 cut(s) 145
Aor13HI TCCGGA 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 182, 234
AvaII GGWCC 2 cut(s) 182, 234
BciT130I CCWGG 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 2 cut(s) 182, 234
BmeRI GACNNNNNGTC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 182, 234
BmiI GGNNCC 1 cut(s) 235
BmrFI CCNGG 1 cut(s) 155
BsaHI GRCGYC 2 cut(s) 70, 219
BsaWI WCCGGW 1 cut(s) 179
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 184
BseAI TCCGGA 1 cut(s) 179
BseBI CCWGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 191
BsiSI CCGG 2 cut(s) 180, 185
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 247
BsmI GAATGC 1 cut(s) 175
Bsp13I TCCGGA 1 cut(s) 179
Bsp143I GATC 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 235
BspPI GGATC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssMI GATC 1 cut(s) 150
BssNI GRCGYC 2 cut(s) 70, 219
Bst2UI CCWGG 1 cut(s) 155
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 70, 219
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 182, 234
CpoI CGGWCCG 1 cut(s) 182
CseI GACGC 1 cut(s) 227
CspI CGGWCCG 1 cut(s) 182
CviAII CATG 1 cut(s) 223
CviJI RGCY 3 cut(s) 188, 195, 266
CviKI_1 RGCY 3 cut(s) 188, 195, 266
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 182, 234
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 9
FaeI CATG 1 cut(s) 226
FaiI YATR 2 cut(s) 215, 224
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 222
FblI GTMKAC 1 cut(s) 111
HapII CCGG 2 cut(s) 180, 185
HgaI GACGC 1 cut(s) 227
Hin1I GRCGYC 2 cut(s) 70, 219
Hin1II CATG 1 cut(s) 226
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 2 cut(s) 43, 202
HpaII CCGG 2 cut(s) 180, 185
Hpy166II GTNNAC 2 cut(s) 112, 131
Hpy188I TCNGA 1 cut(s) 37
Hpy188III TCNNGA 1 cut(s) 180
Hpy8I GTNNAC 2 cut(s) 112, 131
Hpy99I CGWCG 2 cut(s) 72, 75
HpyCH4IV ACGT 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 2 cut(s) 70, 219
Hsp92II CATG 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 179
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 7 cut(s) 75, 140, 159, 167, 185, 193, 198
MaeII ACGT 1 cut(s) 70
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 150
MluCI AATT 3 cut(s) 15, 244, 254
MlyI GAGTC 1 cut(s) 196
MnlI CCTC 1 cut(s) 128
MroI TCCGGA 1 cut(s) 179
MspI CCGG 2 cut(s) 180, 185
MspR9I CCNGG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 27
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 226
NlaIV GGNNCC 1 cut(s) 235
PcsI WCGNNNNNNNCGW 3 cut(s) 64, 79, 88
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 1 cut(s) 43
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 2 cut(s) 182, 234
PsuI RGATCY 1 cut(s) 150
Rsr2I CGGWCCG 1 cut(s) 182
RsrII CGGWCCG 1 cut(s) 182
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 182, 234
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 1 cut(s) 155
SetI ASST 4 cut(s) 64, 73, 159, 268
SinI GGWCC 2 cut(s) 182, 234
Sse9I AATT 3 cut(s) 15, 244, 254
StyD4I CCNGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 73
TasI AATT 3 cut(s) 15, 244, 254
TfiI GAWTC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 214
VpaK11BI GGWCC 2 cut(s) 182, 234
XmiI GTMKAC 1 cut(s) 111
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.