Rorug01G0249600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000506
Physical Location & Seq
Forward (+)
35783056 .. 35783553
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0249600.1

Sequence Viewer

Length: 498 bp
ATGTCTTCCAACTCTGATGCACCGGCGACTACTGCATCGTCGTTTGCGGCCATGGAAGTGTCAAATCAGTTCAAGCAAGTGTTTGAGGTGATGGATGCAAACGGGGACGGGAAGATATCTCCGGTGGAGCTCAGTGAAGTTCTCTGCTGCCTCGGGTACAAGAACAAGTCCGCGGCGGCGAAAGAAGCTGAAGGGATGGTGAGAGAGATGGACTGCAATGGAGACGGGTTTATTGACTTGGATGAGTTCATGAATGCTGTGAATGTTAATGATACGAAGAGTAATGGCTGTGATGATCTCATGGATGCTTTTCTTATATTTGATACTGATAAGAACGGAAAGATTTCAGCCAAGGAGTTGAGGAGGGTGCTAGTTAGCCTTGGATGTGAAAGAAGCAGTCTCAAAGAGTGTAAACAAATGATCAAAGGGGTTGATAAGAATGGAGATGGGGTTGTGGATTTTGAAGAATTTAGGTTGATGATGACAAGAAATGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.04

Weight (kDa)

4.53

Isoelectric Point (pI)

27.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 23 - 86 3.8e-11 EF-hand domain pair
EF-hand_5 PF13202 24 - 47 3.1e-06 EF hand
EF-hand_1 PF00036 64 - 87 5.7e-06 EF hand domain
EF-hand_1 PF00036 99 - 126 1.3e-06 EF hand domain
EF-hand_6 PF13405 99 - 128 3.9e-08 EF-hand domain
EF-hand_7 PF13499 99 - 161 8.7e-13 EF-hand domain pair
EF-hand_5 PF13202 101 - 124 8.1e-07 EF hand
EF-hand_8 PF13833 115 - 164 1.3e-06 EF-hand domain pair
EF-hand_1 PF00036 136 - 163 3.3e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 4 cut(s) 47, 171, 173, 176
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 1 cut(s) 210
AfaI GTAC 1 cut(s) 158
AgsI TTSAA 2 cut(s) 73, 464
AluBI AGCT 2 cut(s) 130, 188
AluI AGCT 2 cut(s) 130, 188
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 216, 404
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 100, 211
AvaI CYCGRG 1 cut(s) 152
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 134
BccI CCATC 4 cut(s) 85, 190, 202, 440
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 216, 404
BfaI CTAG 1 cut(s) 371
BisI GCNGC 4 cut(s) 48, 148, 174, 177
BlsI GCNGC 4 cut(s) 49, 149, 175, 178
BmeT110I CYCGRG 1 cut(s) 152
BmsI GCATC 4 cut(s) 7, 44, 85, 295
BsaJI CCNNGG 5 cut(s) 51, 151, 171, 351, 379
BsaWI WCCGGW 1 cut(s) 121
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bse118I RCCGGY 1 cut(s) 22
Bse3DI GCAATG 1 cut(s) 223
BseDI CCNNGG 5 cut(s) 51, 151, 171, 351, 379
BseGI GGATG 5 cut(s) 100, 201, 247, 310, 389
BseMI GCAATG 1 cut(s) 223
BseMII CTCAG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 376
BseXI GCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 23, 122
BslFI GGGAC 1 cut(s) 119
BsmAI GTCTC 2 cut(s) 216, 404
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 119
BsmI GAATGC 1 cut(s) 259
BsnI GGCC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 2 cut(s) 295, 420
Bsp19I CCATGG 1 cut(s) 51
BspACI CCGC 4 cut(s) 47, 171, 173, 176
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 144
BspFNI CGCG 1 cut(s) 173
BspHI TCATGA 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 223
BsrFI RCCGGY 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 5 cut(s) 51, 151, 171, 351, 379
BssMI GATC 2 cut(s) 295, 420
BssT1I CCWWGG 3 cut(s) 51, 351, 379
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 131
BstDSI CCRYGG 2 cut(s) 51, 171
BstF5I GGATG 5 cut(s) 100, 201, 247, 310, 389
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 298, 423
BstMAI GTCTC 2 cut(s) 216, 404
BstMBI GATC 2 cut(s) 295, 420
BstMWI GCNNNNNNNGC 2 cut(s) 32, 185
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 134
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 2 cut(s) 51, 171
BtsCI GGATG 5 cut(s) 100, 201, 247, 310, 389
BtsIMutI CAGTG 1 cut(s) 139
CciI TCATGA 1 cut(s) 249
Cfr10I RCCGGY 1 cut(s) 22
Cfr42I CCGCGG 1 cut(s) 174
Csp6I GTAC 1 cut(s) 157
CviAII CATG 3 cut(s) 52, 250, 301
CviJI RGCY 6 cut(s) 50, 130, 188, 288, 350, 378
CviKI_1 RGCY 6 cut(s) 50, 130, 188, 288, 350, 378
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 131
DpnI GATC 2 cut(s) 297, 422
DpnII GATC 2 cut(s) 295, 420
EaeI YGGCCR 1 cut(s) 48
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 3 cut(s) 51, 351, 379
Eco24I GRGCYC 1 cut(s) 132
Eco32I GATATC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 152
EcoICRI GAGCTC 1 cut(s) 130
EcoRV GATATC 1 cut(s) 117
EcoT14I CCWWGG 3 cut(s) 51, 351, 379
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 3 cut(s) 51, 351, 379
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 3 cut(s) 55, 253, 304
FaiI YATR 4 cut(s) 53, 251, 302, 317
FaqI GGGAC 1 cut(s) 119
FatI CATG 3 cut(s) 51, 249, 300
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 48, 148, 174, 177
FokI GGATG 5 cut(s) 107, 208, 254, 317, 396
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 4 cut(s) 48, 148, 174, 177
FspBI CTAG 1 cut(s) 371
GluI GCNGC 4 cut(s) 48, 148, 174, 177
HaeIII GGCC 1 cut(s) 50
HapII CCGG 2 cut(s) 23, 122
Hin1II CATG 3 cut(s) 55, 253, 304
HpaII CCGG 2 cut(s) 23, 122
HphI GGTGA 2 cut(s) 100, 211
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 413
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 185
HpyCH4V TGCA 4 cut(s) 20, 35, 98, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 185
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 3 cut(s) 55, 253, 304
Ksp22I TGATCA 1 cut(s) 420
KspI CCGCGG 1 cut(s) 174
Kzo9I GATC 2 cut(s) 295, 420
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 2 cut(s) 36, 135
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 4 cut(s) 7, 44, 85, 295
MaeI CTAG 1 cut(s) 371
MalI GATC 2 cut(s) 297, 422
MboI GATC 2 cut(s) 295, 420
MboII GAAGA 3 cut(s) 124, 289, 476
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 79, 161, 354, 357
MroXI GAANNNNTTC 1 cut(s) 343
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 23, 122
Mva1269I GAATGC 1 cut(s) 259
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 32, 185
NcoI CCATGG 1 cut(s) 51
NdeII GATC 2 cut(s) 295, 420
NlaIII CATG 3 cut(s) 55, 253, 304
PagI TCATGA 1 cut(s) 249
PctI GAATGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 343
PkrI GCNGC 4 cut(s) 49, 149, 175, 178
Psp124BI GAGCTC 1 cut(s) 132
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 56
SacI GAGCTC 1 cut(s) 132
SacII CCGCGG 1 cut(s) 174
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 4 cut(s) 48, 148, 174, 177
Sau3AI GATC 2 cut(s) 295, 420
SduI GDGCHC 1 cut(s) 132
SetI ASST 4 cut(s) 90, 132, 190, 476
SfaNI GCATC 4 cut(s) 7, 44, 85, 295
Sfr303I CCGCGG 1 cut(s) 174
SgrAI CRCCGGYG 1 cut(s) 22
SgrBI CCGCGG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 56
Sse9I AATT 1 cut(s) 467
SsiI CCGC 4 cut(s) 47, 171, 173, 176
SspMI CTAG 1 cut(s) 371
SstI GAGCTC 1 cut(s) 132
StyI CCWWGG 3 cut(s) 51, 351, 379
TasI AATT 1 cut(s) 467
TauI GCSGC 3 cut(s) 50, 176, 179
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 139
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 238, 266
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 1 cut(s) 139
XapI RAATTY 1 cut(s) 467
XmnI GAANNNNTTC 1 cut(s) 343
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.