Rh1BG230800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000506
Physical Location & Seq
Forward (+)
35299006 .. 35302070
3065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG230800.1

Sequence Viewer

Length: 813 bp
ATGGGGGATTTGTACGCTTTGGATTTCGACGGAGTTCTGTGCGATAGCTGCGGAGAGGGCTATGCCTCTGCTGCCAAGGCTGCTAAAGTGATATGGCCAACGCTATTCAACGATGTGGATTCAAGTTTAGAGGATTGGCTTGTCGATCAAGTCCGCACAGTGAGACCTGTGCTGCAAAAGCGGTATGACAATCTTCTACTTGTGAGGTTACTTTTGGAGATGAGGCTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAAGGGATAGTGGAGAATTGGTCAGAGTTGAAGAATCTGATTTTGAAGGAATGGGGTGAGGATAAGGATGCTCTTCTAAATTTATATGGAAAGGTCAGGGATGAGTGGAGGGTTCAGGACTTGAAAACTTGGATCGGTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACCTCAACCATTTACATTGTCACTGGGAAACTGAGCCCATTTGCTGAGGTAATACTACAAGAATTTGCAAAAGATACAATACCGCCTGAAAGAATATTTGGTGTTGGAGCTGGTTCCGAACCTAAGCTAGAAAAACTGAAGCAACTTCAAAAGAAACCAGAACATCAAGGGCTGAAGCTGCACTTTGTGGAGGATAGACTGGCAACTCTGAAGAAAGTTATCAAAGAACCTGAATTGGATGGCTGGAATTTGTATCTAAGTGGTTGGGGGTACAATACACAGAAAGAAAAAGACGAAGCTGCTACAATTCCTAGGATTCAGATTCTTCAACTTTCTGACTTCAATACCAAGCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.56

Weight (kDa)

5.66

Isoelectric Point (pI)

24.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 154, 181, 536
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 3 cut(s) 349, 515, 700
AcuI CTGAAG 3 cut(s) 611, 647, 683
AdeI CACNNNGTG 1 cut(s) 640
AfaI GTAC 2 cut(s) 14, 725
AgsI TTSAA 8 cut(s) 109, 123, 301, 316, 394, 602, 782, 796
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 6 cut(s) 48, 563, 580, 631, 752, 805
AluI AGCT 6 cut(s) 48, 563, 580, 631, 752, 805
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 6 cut(s) 48, 71, 80, 172, 631, 752
ApoI RAATTY 3 cut(s) 349, 515, 700
AspA2I CCTAGG 1 cut(s) 764
AsuHPI GGTGA 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 764
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 2 cut(s) 264, 491
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 6 cut(s) 35, 58, 67, 159, 618, 739
BccI CCATC 1 cut(s) 686
BciT130I CCWGG 1 cut(s) 426
BciVI GTATCC 1 cut(s) 432
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 581, 765
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 6 cut(s) 49, 72, 81, 173, 632, 753
BlnI CCTAGG 1 cut(s) 764
BlsI GCNGC 6 cut(s) 50, 73, 82, 174, 633, 754
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 568
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 2 cut(s) 328, 427
BmuI ACTGGG 1 cut(s) 486
Bpu10I CCTNAGC 2 cut(s) 498, 576
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 75, 764
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 2 cut(s) 481, 657
BseBI CCWGG 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 75, 764
BseGI GGATG 3 cut(s) 343, 376, 697
BseMII CTCAG 2 cut(s) 476, 489
BseNI ACTGG 2 cut(s) 481, 657
BseXI GCAGC 6 cut(s) 35, 58, 67, 159, 618, 739
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 264, 491
Bsp143I GATC 2 cut(s) 145, 402
BspACI CCGC 4 cut(s) 51, 154, 181, 536
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 477, 490
BspLI GGNNCC 1 cut(s) 568
BspPI GGATC 1 cut(s) 410
BspQI GCTCTTC 1 cut(s) 348
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 481, 657
BssECI CCNNGG 2 cut(s) 75, 764
BssMI GATC 2 cut(s) 145, 402
BssT1I CCWWGG 2 cut(s) 75, 764
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 160, 268
Bst6I CTCTTC 1 cut(s) 348
BstDEI CTNAG 4 cut(s) 485, 498, 576, 710
BstF5I GGATG 3 cut(s) 343, 376, 697
BstKTI GATC 2 cut(s) 148, 405
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 145, 402
BstMWI GCNNNNNNNGC 7 cut(s) 48, 57, 71, 77, 80, 178, 631
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 6 cut(s) 35, 58, 67, 159, 618, 739
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 343, 376, 697
BtsIMutI CAGTG 2 cut(s) 165, 474
Csp6I GTAC 2 cut(s) 13, 724
CviQI GTAC 2 cut(s) 13, 724
DdeI CTNAG 4 cut(s) 485, 498, 576, 710
DpnI GATC 2 cut(s) 147, 404
DpnII GATC 2 cut(s) 145, 402
DraIII CACNNNGTG 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 2 cut(s) 75, 764
Eco24I GRGCYC 2 cut(s) 264, 491
Eco31I GGTCTC 1 cut(s) 157
Eco57I CTGAAG 3 cut(s) 611, 647, 683
EcoRII CCWGG 1 cut(s) 424
EcoT14I CCWWGG 2 cut(s) 75, 764
EcoT38I GRGCYC 2 cut(s) 264, 491
ErhI CCWWGG 2 cut(s) 75, 764
FaiI YATR 6 cut(s) 63, 94, 186, 236, 355, 357
FalI AAGNNNNNCTT 2 cut(s) 620, 652
Fnu4HI GCNGC 6 cut(s) 49, 72, 81, 173, 632, 753
FokI GGATG 3 cut(s) 350, 383, 704
FriOI GRGCYC 2 cut(s) 264, 491
Fsp4HI GCNGC 6 cut(s) 49, 72, 81, 173, 632, 753
FspBI CTAG 2 cut(s) 581, 765
GluI GCNGC 6 cut(s) 49, 72, 81, 173, 632, 753
HaeIII GGCC 1 cut(s) 97
HinfI GANTC 4 cut(s) 119, 304, 769, 775
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 6 cut(s) 295, 309, 571, 663, 774, 790
Hpy188III TCNNGA 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 240, 251, 266, 310
HpyCH4III ACNGT 2 cut(s) 160, 268
HpyCH4V TGCA 5 cut(s) 175, 254, 410, 521, 634
HpyF10VI GCNNNNNNNGC 7 cut(s) 48, 57, 71, 77, 80, 178, 631
HpyF3I CTNAG 4 cut(s) 485, 498, 576, 710
Kzo9I GATC 2 cut(s) 145, 402
LguI GCTCTTC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 560
Lsp1109I GCAGC 6 cut(s) 35, 58, 67, 159, 618, 739
LweI GCATC 2 cut(s) 328, 427
MaeI CTAG 2 cut(s) 581, 765
MaeIII GTNAC 2 cut(s) 207, 472
MalI GATC 2 cut(s) 147, 404
MboI GATC 2 cut(s) 145, 402
MboII GAAGA 5 cut(s) 185, 313, 335, 676, 770
MhlI GDGCHC 2 cut(s) 264, 491
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 6 cut(s) 286, 349, 515, 686, 700, 759
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 538
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 426
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 7 cut(s) 48, 57, 71, 77, 80, 178, 631
NdeII GATC 2 cut(s) 145, 402
NlaIV GGNNCC 1 cut(s) 568
NmuCI GTSAC 1 cut(s) 472
PciSI GCTCTTC 1 cut(s) 348
PfeI GAWTC 4 cut(s) 119, 304, 769, 775
PkrI GCNGC 6 cut(s) 50, 73, 82, 174, 633, 754
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 568
RsaI GTAC 2 cut(s) 14, 725
RsaNI GTAC 2 cut(s) 13, 724
SapI GCTCTTC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 6 cut(s) 49, 72, 81, 173, 632, 753
Sau3AI GATC 2 cut(s) 145, 402
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 2 cut(s) 264, 491
SfaNI GCATC 2 cut(s) 328, 427
Sse9I AATT 6 cut(s) 286, 349, 515, 686, 700, 759
SsiI CCGC 4 cut(s) 51, 154, 181, 536
SspI AATATT 1 cut(s) 549
SspMI CTAG 2 cut(s) 581, 765
StyD4I CCNGG 1 cut(s) 424
StyI CCWWGG 2 cut(s) 75, 764
TaaI ACNGT 2 cut(s) 160, 268
TaqI TCGA 2 cut(s) 27, 144
TasI AATT 6 cut(s) 286, 349, 515, 686, 700, 759
TfiI GAWTC 4 cut(s) 119, 304, 769, 775
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 165, 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 6 cut(s) 48, 71, 80, 172, 631, 752
Tsp45I GTSAC 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 165, 481
XapI RAATTY 3 cut(s) 349, 515, 700
XmaJI CCTAGG 1 cut(s) 764
XspI CTAG 2 cut(s) 581, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.