Rorug01G0249400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000506
Physical Location & Seq
Reverse (-)
35763509 .. 35766750
3242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0249400.1

Sequence Viewer

Length: 1257 bp
ATGGCCACCTCTGTTTCCAATGCTGTTTGCTTTCGCTATCCCCACCCACCAAACCCAACACTCAACGAACCCAGAAAAACCCACCTCCCCCAATTCTCCGGCAACACTTTCCGGCCAAAACCCATGAATCTTTGCTCTTCCGGCCACCGTTTTCAGCCACCATTGATGGCTCTAAGTGTAGAAGAGACATCAATGAATGAAAATACAGAAGGGATGCCAAGGTTTAAGTGGGGTGTGATAGGTCCTGATATTACAGAAGCCCAGCAAGAAGCTATAGATGAACTCCCTCCCAAGATGAGCAAGCGTTGCCAGGCTTTGATGAAGCAGATTATTTGCTTCTCTCATGAGAAAGGGAGTCTTTGTGAGGTGTTGGATGCTTGGGTTAGCATTATGAAGCCTTGCAGGGCTGACTGGCTTGCGGTTCTTAAAGAACTGAGGATTAAAGATCACCCACTTTATCTTCAGGTGGCAGAAATTGCTGTACTAGATGAATCTTTTGAAGCCAATGTGCGTGACTATACGAAAATAATCCATGGTTATGGGAAGCAAAACCAAATTGAGGATGCTGAAAACACCCTTTCAAACATGAAGTCTAGAGGCTTCGTCTGTGATCAGGTAACGCTAACTGCCATGGTTGACATGTATAGCAAGGCTGGACATCTTAAGCTGGCTGAGGATACTTTTGAAGAAATTAAGCTCCTTGGACAGCAATTAGATAAAAGATCATATGGCTCAATGATCATGGCCTACATTAGAGCTGGAATGCCTGATCAGGGAGAGAATTTACTCATAGAAATGGATGCCCAAGAAATTTATGCTGGAAGTGAAGTTTACAAGGCATTGTTAAGAGCATACTCATTGATTGGTGATACTGAAGGAGCTCAAAGGGTATTCAATGCAGTTCAGCTAGCTGGTATTTCTCCAGATGCTAAGATATGTGGACTTCTCATAAATGCATATGGTACATCAGGTCAAAGTCAAAAGGCACGTGCTGCGTTTGAAAATATGAGGAAGGCTGGTCTTAAACCCAGTGATAAATGCATAGCTCTAATGTTGGCTGCATACGAAAAGGAGAATAAGCTTCAAATGGCATTGAAGTTTCTGATGGGGTTGGAGAGAGAAGGTATCATGGTTGGGAAAGAAGCTGCAGAAACACTGGCTGGATGGTTTAGAAAACTAGGAGTTGTGGAAGAGGTGGATATGGTCTTGAGAGAATTTGCAGCAACAGAAACCAATTCTGGAATTCCTGCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

46.51

Weight (kDa)

5.8

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 173 - 217 2.4e-09 PPR repeat family
PPR_long PF17177 262 - 391 2.9e-06 Pentacotripeptide-repeat region of PRORP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 419
AcoI YGGCCR 3 cut(s) 3, 113, 142
AcsI RAATTY 4 cut(s) 781, 810, 1214, 1242
AcuI CTGAAG 2 cut(s) 446, 894
AcvI CACGTG 1 cut(s) 989
AfaI GTAC 2 cut(s) 483, 964
AfiI CCNNNNNNNGG 2 cut(s) 559, 773
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 639
AgsI TTSAA 7 cut(s) 500, 582, 686, 895, 1001, 1085, 1096
AjnI CCWGG 1 cut(s) 309
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 4 cut(s) 3, 113, 142, 744
ApeKI GCWGC 4 cut(s) 992, 1058, 1145, 1220
ApoI RAATTY 4 cut(s) 781, 810, 1214, 1242
ArsI GACNNNNNNTTYG 2 cut(s) 575, 607
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 440, 878
AsuNHI GCTAGC 1 cut(s) 907
AvaII GGWCC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 883
BbrPI CACGTG 1 cut(s) 989
Bbv12I GWGCWC 1 cut(s) 883
BbvCI CCTCAGC 1 cut(s) 672
BbvI GCAGC 4 cut(s) 979, 1045, 1132, 1232
BccI CCATC 3 cut(s) 160, 1099, 1158
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 670
BclI TGATCA 3 cut(s) 610, 738, 769
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 5 cut(s) 485, 594, 908, 1178, 1255
BfmI CTRYAG 2 cut(s) 273, 1146
BfrI CTTAAG 1 cut(s) 662
BfuI GTATCC 1 cut(s) 670
BisI GCNGC 4 cut(s) 993, 1059, 1146, 1221
BlsI GCNGC 4 cut(s) 994, 1060, 1147, 1222
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 311
BmrI ACTGGG 1 cut(s) 1023
BmsI GCATC 5 cut(s) 204, 364, 553, 790, 916
BmtI GCTAGC 1 cut(s) 911
BmuI ACTGGG 1 cut(s) 1023
BpmI CTGGAG 1 cut(s) 906
Bpu10I CCTNAGC 1 cut(s) 672
BpuEI CTTGAG 1 cut(s) 1228
BsaAI YACGTR 1 cut(s) 989
BsaJI CCNNGG 4 cut(s) 218, 532, 630, 700
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 773
Bse1I ACTGG 3 cut(s) 416, 1029, 1161
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 4 cut(s) 218, 532, 630, 700
BseGI GGATG 5 cut(s) 219, 379, 568, 805, 1169
BseLI CCNNNNNNNGG 2 cut(s) 559, 773
BseMII CTCAG 2 cut(s) 425, 663
BseNI ACTGG 3 cut(s) 416, 1029, 1161
BseXI GCAGC 4 cut(s) 979, 1045, 1132, 1232
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 4 cut(s) 5, 115, 144, 746
BsiHKAI GWGCWC 1 cut(s) 883
BsiSI CCGG 3 cut(s) 99, 112, 141
BslI CCNNNNNNNGG 2 cut(s) 559, 773
BsmAI GTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 768
BsnI GGCC 4 cut(s) 5, 115, 144, 746
Bsp1286I GDGCHC 1 cut(s) 883
Bsp143I GATC 5 cut(s) 445, 610, 722, 738, 769
Bsp19I CCATGG 2 cut(s) 532, 630
BspACI CCGC 1 cut(s) 419
BspANI GGCC 4 cut(s) 5, 115, 144, 746
BspCNI CTCAG 2 cut(s) 426, 664
BspHI TCATGA 1 cut(s) 343
BspMAI CTGCAG 1 cut(s) 1150
BspOI GCTAGC 1 cut(s) 911
BspQI GCTCTTC 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 662
BsrI ACTGG 3 cut(s) 416, 1029, 1161
BssECI CCNNGG 4 cut(s) 218, 532, 630, 700
BssMI GATC 5 cut(s) 445, 610, 722, 738, 769
BssT1I CCWWGG 4 cut(s) 218, 532, 630, 700
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 1 cut(s) 149
Bst6I CTCTTC 3 cut(s) 142, 177, 1185
BstAFI CTTAAG 1 cut(s) 662
BstAPI GCANNNNNTGC 3 cut(s) 306, 476, 992
BstBAI YACGTR 1 cut(s) 989
BstC8I GCNNGC 4 cut(s) 302, 417, 669, 909
BstDEI CTNAG 4 cut(s) 173, 434, 672, 930
BstDSI CCRYGG 2 cut(s) 532, 630
BstF5I GGATG 5 cut(s) 219, 379, 568, 805, 1169
BstKTI GATC 5 cut(s) 448, 613, 725, 741, 772
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 5 cut(s) 445, 610, 722, 738, 769
BstMWI GCNNNNNNNGC 4 cut(s) 141, 306, 476, 992
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 309
BstSFI CTRYAG 2 cut(s) 273, 1146
BstV1I GCAGC 4 cut(s) 979, 1045, 1132, 1232
BstXI CCANNNNNNTGG 1 cut(s) 539
BsuI GTATCC 1 cut(s) 670
BsuRI GGCC 4 cut(s) 5, 115, 144, 746
BtgI CCRYGG 2 cut(s) 532, 630
BtsCI GGATG 5 cut(s) 219, 379, 568, 805, 1169
BtsIMutI CAGTG 2 cut(s) 1036, 1154
Cac8I GCNNGC 4 cut(s) 302, 417, 669, 909
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 482, 963
CviAII CATG 8 cut(s) 124, 344, 533, 586, 631, 640, 742, 1129
CviQI GTAC 2 cut(s) 482, 963
DdeI CTNAG 4 cut(s) 173, 434, 672, 930
DpnI GATC 5 cut(s) 447, 612, 724, 740, 771
DpnII GATC 5 cut(s) 445, 610, 722, 738, 769
EaeI YGGCCR 3 cut(s) 3, 113, 142
Eam1104I CTCTTC 3 cut(s) 142, 177, 1185
EarI CTCTTC 3 cut(s) 142, 177, 1185
Ecl136II GAGCTC 1 cut(s) 881
Eco130I CCWWGG 4 cut(s) 218, 532, 630, 700
Eco24I GRGCYC 1 cut(s) 883
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 881
Eco57I CTGAAG 2 cut(s) 446, 894
Eco72I CACGTG 1 cut(s) 989
EcoICRI GAGCTC 1 cut(s) 881
EcoO109I RGGNCCY 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 1242
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 4 cut(s) 218, 532, 630, 700
EcoT22I ATGCAT 2 cut(s) 958, 1043
EcoT38I GRGCYC 1 cut(s) 883
ErhI CCWWGG 4 cut(s) 218, 532, 630, 700
FaeI CATG 8 cut(s) 127, 347, 536, 589, 634, 643, 745, 1132
FalI AAGNNNNNCTT 2 cut(s) 342, 374
FatI CATG 8 cut(s) 123, 343, 532, 585, 630, 639, 741, 1128
FauNDI CATATG 2 cut(s) 727, 958
FbaI TGATCA 3 cut(s) 610, 738, 769
Fnu4HI GCNGC 4 cut(s) 993, 1059, 1146, 1221
FokI GGATG 5 cut(s) 226, 386, 575, 812, 1176
FriOI GRGCYC 1 cut(s) 883
Fsp4HI GCNGC 4 cut(s) 993, 1059, 1146, 1221
FspBI CTAG 5 cut(s) 485, 594, 908, 1178, 1255
GluI GCNGC 4 cut(s) 993, 1059, 1146, 1221
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 906
HaeIII GGCC 4 cut(s) 5, 115, 144, 746
HapII CCGG 3 cut(s) 99, 112, 141
Hin1II CATG 8 cut(s) 127, 347, 536, 589, 634, 643, 745, 1132
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 1079
HinfI GANTC 3 cut(s) 127, 355, 491
HpaII CCGG 3 cut(s) 99, 112, 141
HphI GGTGA 2 cut(s) 440, 878
Hpy166II GTNNAC 3 cut(s) 637, 832, 941
Hpy188I TCNGA 1 cut(s) 1104
Hpy188III TCNNGA 6 cut(s) 245, 344, 594, 923, 1207, 1239
Hpy8I GTNNAC 3 cut(s) 637, 832, 941
HpyAV CCTTC 4 cut(s) 203, 869, 1006, 1115
HpyCH4III ACNGT 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 988
HpyCH4V TGCA 7 cut(s) 402, 899, 956, 1041, 1061, 1148, 1220
HpyF10VI GCNNNNNNNGC 4 cut(s) 141, 306, 476, 992
HpyF3I CTNAG 4 cut(s) 173, 434, 672, 930
HpySE526I ACGT 1 cut(s) 988
Hsp92II CATG 8 cut(s) 127, 347, 536, 589, 634, 643, 745, 1132
Ksp22I TGATCA 3 cut(s) 610, 738, 769
Kzo9I GATC 5 cut(s) 445, 610, 722, 738, 769
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 702, 878
Lsp1109I GCAGC 4 cut(s) 979, 1045, 1132, 1232
LweI GCATC 5 cut(s) 204, 364, 553, 790, 916
MaeI CTAG 5 cut(s) 485, 594, 908, 1178, 1255
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 2 cut(s) 512, 616
MalI GATC 5 cut(s) 447, 612, 724, 740, 771
MboI GATC 5 cut(s) 445, 610, 722, 738, 769
MboII GAAGA 5 cut(s) 129, 194, 452, 698, 1202
MhlI GDGCHC 1 cut(s) 883
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 2 cut(s) 351, 1092
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 958, 1043
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 225, 426, 441, 663, 693, 845, 1023
MslI CAYNNNNRTG 2 cut(s) 537, 794
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 3 cut(s) 99, 112, 141
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 768
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 4 cut(s) 141, 306, 476, 992
NcoI CCATGG 2 cut(s) 532, 630
NdeI CATATG 2 cut(s) 727, 958
NdeII GATC 5 cut(s) 445, 610, 722, 738, 769
NheI GCTAGC 1 cut(s) 907
NlaIII CATG 8 cut(s) 127, 347, 536, 589, 634, 643, 745, 1132
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 2 cut(s) 958, 1043
NspI RCATGY 1 cut(s) 643
PagI TCATGA 1 cut(s) 343
PciI ACATGT 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 142
PctI GAATGC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 127, 491
PkrI GCNGC 4 cut(s) 994, 1060, 1147, 1222
PleI GAGTC 1 cut(s) 363
PmaCI CACGTG 1 cut(s) 989
PmlI CACGTG 1 cut(s) 989
PpsI GAGTC 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 989
PpuMI RGGWCCY 1 cut(s) 242
PscI ACATGT 1 cut(s) 639
Psp124BI GAGCTC 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 309
PspCI CACGTG 1 cut(s) 989
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 309
PspPI GGNCC 1 cut(s) 242
PspPPI RGGWCCY 1 cut(s) 242
PstI CTGCAG 1 cut(s) 1150
RsaI GTAC 2 cut(s) 483, 964
RsaNI GTAC 2 cut(s) 482, 963
RseI CAYNNNNRTG 2 cut(s) 537, 794
SacI GAGCTC 1 cut(s) 883
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 7 cut(s) 225, 426, 441, 663, 693, 845, 1023
SatI GCNGC 4 cut(s) 993, 1059, 1146, 1221
Sau3AI GATC 5 cut(s) 445, 610, 722, 738, 769
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 5 cut(s) 204, 364, 553, 790, 916
SfcI CTRYAG 2 cut(s) 273, 1146
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 2 cut(s) 537, 794
SmlI CTYRAG 2 cut(s) 662, 1207
SmoI CTYRAG 2 cut(s) 662, 1207
SsiI CCGC 1 cut(s) 419
SspMI CTAG 5 cut(s) 485, 594, 908, 1178, 1255
SstI GAGCTC 1 cut(s) 883
StyD4I CCNGG 1 cut(s) 309
StyI CCWWGG 4 cut(s) 218, 532, 630, 700
TaaI ACNGT 1 cut(s) 149
TaiI ACGT 1 cut(s) 991
TatI WGTACW 1 cut(s) 481
TfiI GAWTC 2 cut(s) 127, 491
Tru1I TTAA 7 cut(s) 225, 426, 441, 663, 693, 845, 1023
Tru9I TTAA 7 cut(s) 225, 426, 441, 663, 693, 845, 1023
TscAI CASTG 2 cut(s) 1036, 1161
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 4 cut(s) 992, 1058, 1145, 1220
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 8 cut(s) 140, 209, 213, 294, 335, 407, 504, 602
TspRI CASTG 2 cut(s) 1036, 1161
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 4 cut(s) 781, 810, 1214, 1242
XbaI TCTAGA 1 cut(s) 593
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 225
XspI CTAG 5 cut(s) 485, 594, 908, 1178, 1255
Zsp2I ATGCAT 2 cut(s) 958, 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.