Rmu_sc0002569.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002569.1
OG0000506
Physical Location & Seq
Forward (+)
1 .. 3558
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002569.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
gtgagacctgtgctgcaaaagcggtatgacaatcttctacttgtgaggttacttttggagatgaggcttccttctttaagaaagtcatcagttgcagaagggctcacggtggaagggatagtggagaattggttagagttgaagaatctgattttgaaggaatggggtgaggatagggatgctcttttaaattcatatggaaaggtcagggatgagtggaaggttcaggacttgaaaacttggatcggtgcaaatagattgtatccaggtgttgctgatgctcttaaatcggcaacctcagccatttacattgtcactgggaaacagagcccatttgctgaggtaatactacaagaatttgcaaaagatacaataccgtctgaaagaatatttggtgttggagctggttccgaacctaagatagaaaaactaaagcaacttcaaaagaaaccagaacatcaagggctgaagctgcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.02

Weight (kDa)

9.25

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 22
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 2 cut(s) 190, 356
AgsI TTSAA 4 cut(s) 142, 157, 235, 443
AjnI CCWGG 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 2 cut(s) 404, 472
AluI AGCT 2 cut(s) 404, 472
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 13, 472
ApoI RAATTY 2 cut(s) 190, 356
AsuHPI GGTGA 1 cut(s) 179
BanII GRGCYC 2 cut(s) 105, 332
BbvCI CCTCAGC 2 cut(s) 298, 339
BbvI GCAGC 1 cut(s) 459
BciT130I CCWGG 1 cut(s) 267
BciVI GTATCC 1 cut(s) 273
BfmI CTRYAG 1 cut(s) 473
BfuI GTATCC 1 cut(s) 273
BisI GCNGC 2 cut(s) 14, 473
BlsI GCNGC 2 cut(s) 15, 474
Bme1390I CCNGG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 409
BmrFI CCNGG 1 cut(s) 267
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 169, 268
BmuI ACTGGG 1 cut(s) 327
Bpu10I CCTNAGC 2 cut(s) 298, 339
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 267
BseGI GGATG 2 cut(s) 184, 217
BseMII CTCAG 2 cut(s) 312, 330
BseNI ACTGG 1 cut(s) 322
BseXI GCAGC 1 cut(s) 459
Bsp1286I GDGCHC 2 cut(s) 105, 332
Bsp143I GATC 1 cut(s) 243
BspACI CCGC 1 cut(s) 22
BspCNI CTCAG 2 cut(s) 311, 331
BspLI GGNNCC 1 cut(s) 409
BspMAI CTGCAG 1 cut(s) 477
BspPI GGATC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 322
BssMI GATC 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 109, 378
BstDEI CTNAG 3 cut(s) 298, 339, 417
BstF5I GGATG 2 cut(s) 184, 217
BstKTI GATC 1 cut(s) 246
BstMBI GATC 1 cut(s) 243
BstMWI GCNNNNNNNGC 3 cut(s) 19, 299, 472
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstSFI CTRYAG 1 cut(s) 473
BstV1I GCAGC 1 cut(s) 459
BsuI GTATCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 184, 217
BtsIMutI CAGTG 1 cut(s) 315
CviJI RGCY 7 cut(s) 67, 103, 302, 330, 404, 466, 472
CviKI_1 RGCY 7 cut(s) 67, 103, 302, 330, 404, 466, 472
DdeI CTNAG 3 cut(s) 298, 339, 417
DpnI GATC 1 cut(s) 245
DpnII GATC 1 cut(s) 243
DraI TTTAAA 1 cut(s) 189
Eco24I GRGCYC 2 cut(s) 105, 332
EcoRII CCWGG 1 cut(s) 265
EcoT38I GRGCYC 2 cut(s) 105, 332
FaiI YATR 3 cut(s) 27, 196, 198
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 14, 473
FokI GGATG 2 cut(s) 191, 224
FriOI GRGCYC 2 cut(s) 105, 332
Fsp4HI GCNGC 2 cut(s) 14, 473
GluI GCNGC 2 cut(s) 14, 473
HinfI GANTC 1 cut(s) 145
HphI GGTGA 1 cut(s) 179
Hpy188I TCNGA 3 cut(s) 150, 382, 412
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 5 cut(s) 81, 92, 107, 151, 214
HpyCH4III ACNGT 2 cut(s) 109, 378
HpyCH4V TGCA 5 cut(s) 16, 95, 251, 362, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 19, 299, 472
HpyF3I CTNAG 3 cut(s) 298, 339, 417
Kzo9I GATC 1 cut(s) 243
LmnI GCTCC 1 cut(s) 401
LpnPI CCDG 8 cut(s) 21, 193, 212, 252, 279, 303, 390, 465
Lsp1109I GCAGC 1 cut(s) 459
LweI GCATC 2 cut(s) 169, 268
MaeIII GTNAC 2 cut(s) 48, 313
MalI GATC 1 cut(s) 245
MboI GATC 1 cut(s) 243
MboII GAAGA 2 cut(s) 26, 154
MhlI GDGCHC 2 cut(s) 105, 332
MluCI AATT 3 cut(s) 127, 190, 356
MmeI TCCRAC 1 cut(s) 379
MnlI CCTC 5 cut(s) 39, 57, 163, 307, 334
MseI TTAA 3 cut(s) 77, 188, 285
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 19, 299, 472
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 243
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 2 cut(s) 15, 474
Psp6I CCWGG 1 cut(s) 265
PspGI CCWGG 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 409
PstI CTGCAG 1 cut(s) 477
SaqAI TTAA 3 cut(s) 77, 188, 285
SatI GCNGC 2 cut(s) 14, 473
Sau3AI GATC 1 cut(s) 243
ScrFI CCNGG 1 cut(s) 267
SduI GDGCHC 2 cut(s) 105, 332
SfaNI GCATC 2 cut(s) 169, 268
SfcI CTRYAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 127, 190, 356
SsiI CCGC 1 cut(s) 22
SspI AATATT 1 cut(s) 390
StyD4I CCNGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 109, 378
TasI AATT 3 cut(s) 127, 190, 356
TfiI GAWTC 1 cut(s) 145
Tru1I TTAA 3 cut(s) 77, 188, 285
Tru9I TTAA 3 cut(s) 77, 188, 285
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 13, 472
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 183
TspRI CASTG 1 cut(s) 322
XapI RAATTY 2 cut(s) 190, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.