Rh1BG230900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000506
Physical Location & Seq
Forward (+)
35318257 .. 35320412
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG230900.1

Sequence Viewer

Length: 585 bp
ATGGGTGATCTATACGCTTTGGATTTCGACGGAGTTATCTGTGATAGCTGCGGAGAAAGCTCTCTATCTGCCCTGAAGGCTGCTAAAATCAGATGGCCAGCTCTGTTCAACAGTGTGGATTCAACTTTGGAGAATTGGGTTCTTGATCAAATGCGCATAGTGAGACCTGTGGTGGAAACTGGGTATGAGAATCTTTTACTTGTGAGGTTACTTCTGGAGATGAGGGTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACAGTGGAAGGGATATTGGAGAAGTGGTCAGAGTTGAAGCCTGTGATTATGGAGGAATGCGGTGAGGACAGGGATGGTCTTATAGATCTGTTTGGGAAGGTTAGGGATGAGTGGATGGAACAGGACTTGAAAACTTGGATTGGTGCAAATAGATTATATCCAGGTGTTCCTGATGCTCTAAAATTCACAAGCTCTACCATATACGTTGTCACTACGAAACAGAGCAGATTTGCTGACGCTTTATTGCGAGAACTGGCAGGAGTTACAATACCGCCTGAAAGAATCTTTGGTCTTGGATCTGGGTTAGTCCATATAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

21.65

Weight (kDa)

4.79

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AciI CCGC 3 cut(s) 51, 324, 536
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 1 cut(s) 446
AcuI CTGAAG 1 cut(s) 95
AgsI TTSAA 4 cut(s) 109, 123, 301, 394
AjnI CCWGG 1 cut(s) 424
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 4 cut(s) 48, 60, 101, 456
AluI AGCT 4 cut(s) 48, 60, 101, 456
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 568
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 48, 80
ApoI RAATTY 1 cut(s) 446
AspLEI GCGC 1 cut(s) 156
AsuHPI GGTGA 2 cut(s) 17, 338
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 264
BbvI GCAGC 2 cut(s) 35, 67
BccI CCATC 3 cut(s) 87, 332, 373
BciT130I CCWGG 1 cut(s) 426
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 157
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 349
BisI GCNGC 2 cut(s) 49, 81
BlsI GCNGC 2 cut(s) 50, 82
Bme1390I CCNGG 1 cut(s) 426
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 2 cut(s) 184, 522
BseBI CCWGG 1 cut(s) 426
BseGI GGATG 3 cut(s) 343, 376, 384
BseNI ACTGG 2 cut(s) 184, 522
BseXI GCAGC 2 cut(s) 35, 67
BshFI GGCC 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 7, 145, 349, 560
BspACI CCGC 3 cut(s) 51, 324, 536
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 184, 522
BssMI GATC 4 cut(s) 7, 145, 349, 560
Bst2UI CCWGG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 113, 268
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 3 cut(s) 343, 376, 384
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 4 cut(s) 10, 148, 352, 563
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 4 cut(s) 7, 145, 349, 560
BstMWI GCNNNNNNNGC 2 cut(s) 57, 77
BstNI CCWGG 1 cut(s) 426
BstSCI CCNGG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 35, 67
BstX2I RGATCY 2 cut(s) 349, 560
BstYI RGATCY 2 cut(s) 349, 560
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 343, 376, 384
BtsIMutI CAGTG 2 cut(s) 118, 273
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 156
CseI GACGC 1 cut(s) 509
CviJI RGCY 8 cut(s) 48, 60, 80, 97, 101, 262, 304, 456
CviKI_1 RGCY 8 cut(s) 48, 60, 80, 97, 101, 262, 304, 456
DpnI GATC 4 cut(s) 9, 147, 351, 562
DpnII GATC 4 cut(s) 7, 145, 349, 560
EaeI YGGCCR 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 424
EcoT38I GRGCYC 1 cut(s) 264
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 49, 81
FokI GGATG 3 cut(s) 350, 383, 391
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 2 cut(s) 49, 81
FspAI RTGCGCAY 1 cut(s) 155
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
GluI GCNGC 2 cut(s) 49, 81
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 97
HgaI GACGC 1 cut(s) 509
HhaI GCGC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 3 cut(s) 119, 190, 546
HphI GGTGA 2 cut(s) 17, 338
Hpy188I TCNGA 2 cut(s) 92, 295
Hpy188III TCNNGA 3 cut(s) 143, 215, 434
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 70, 240, 251, 266, 355
HpyCH4III ACNGT 2 cut(s) 113, 268
HpyCH4IV ACGT 1 cut(s) 468
HpyCH4V TGCA 2 cut(s) 254, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 77
HpySE526I ACGT 1 cut(s) 468
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 7, 145, 349, 560
Lsp1109I GCAGC 2 cut(s) 35, 67
LweI GCATC 1 cut(s) 427
MaeII ACGT 1 cut(s) 468
MaeIII GTNAC 3 cut(s) 207, 472, 526
MalI GATC 4 cut(s) 9, 147, 351, 562
MboI GATC 4 cut(s) 7, 145, 349, 560
MflI RGATCY 2 cut(s) 349, 560
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 2 cut(s) 133, 446
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 4 cut(s) 198, 216, 310, 322
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 426
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 57, 77
NdeII GATC 4 cut(s) 7, 145, 349, 560
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 472
NsbI TGCGCA 1 cut(s) 155
PctI GAATGC 1 cut(s) 326
PfeI GAWTC 3 cut(s) 119, 190, 546
PkrI GCNGC 2 cut(s) 50, 82
Psp6I CCWGG 1 cut(s) 424
PspGI CCWGG 1 cut(s) 424
PspN4I GGNNCC 1 cut(s) 228
PsuI RGATCY 2 cut(s) 349, 560
SatI GCNGC 2 cut(s) 49, 81
Sau3AI GATC 4 cut(s) 7, 145, 349, 560
ScrFI CCNGG 1 cut(s) 426
SduI GDGCHC 1 cut(s) 264
SetI ASST 9 cut(s) 50, 62, 103, 169, 209, 366, 430, 458, 471
SfaNI GCATC 1 cut(s) 427
Sse9I AATT 2 cut(s) 133, 446
SsiI CCGC 3 cut(s) 51, 324, 536
StyD4I CCNGG 1 cut(s) 424
TaaI ACNGT 2 cut(s) 113, 268
TaiI ACGT 1 cut(s) 471
TaqI TCGA 1 cut(s) 27
TasI AATT 2 cut(s) 133, 446
TfiI GAWTC 3 cut(s) 119, 190, 546
TscAI CASTG 2 cut(s) 118, 273
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 48, 80
Tsp45I GTSAC 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 118, 273
XapI RAATTY 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.