Rorug01G0249300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000506
Physical Location & Seq
Forward (+)
35759615 .. 35762969
3355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0249300.1

Sequence Viewer

Length: 741 bp
ATGAATGCGACAACAAACCCTACTGGTGGTTGCTCTGGCGGCGGTGGGGGGAGCAGTAGTGGAGGCAGCGCCGGAGGAGGAAACGCCGGACCGTGTGGCGCGTGTAAGTTCTTGAGGAGGAAGTGCGTGGCGGGATGCATATTTGCACCCTACTTCGATTCGGAGCAAGGGGCAGCTCACTTTGCGGCGGTGCACAAGGTGTTCGGAGCCAGCAATGTCTCCAAGCTTCTTCATCATATTCCGGCTCACAAGCGGCCAGACGCCGTCCTCACTGTTTGTTTTGAGGCTCAAGCTAGGCTCAAAGATCCGGTCTACGGCTGTGTTGCTCACATCTTTGCTCTTCAACAACAGGTGGTGAATTTACAAGCCGAGATCTCATACTTGCAAGCCCACCTAGCAACAATGGAGCTTCCATCACCTCCTCCGCCCCCTCCTCCACTAATCGCTCAACCTCCACTCTCCATTGCAGACCTTCCTTCGGCCCCCATGCCCGCAACGTATGATTTGTCCTCGCTTTTTGAACCCATGGTGCAGCCAACTGCTTGGGTCATGCAACAGCGCGCGCTGCTGCACAACCAACATCATCAGTTCGCAAGCGGTTCTGGTGGTTCCTCATCGAGTGGCGGTGGTGGTGGCGATCTTCAAGCTTTGGCTCGTGAACTGCTCTACAGGCATACTGGTTCTCCGTCGGGGTCGGTGCCGTGCTCTGAGGCTTCACCATCTCAGTCTATGTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

25.31

Weight (kDa)

7.66

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 31 - 129 1.2e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 697
AccI GTMKAC 1 cut(s) 312
AccII CGCG 3 cut(s) 101, 561, 563
AclWI GGATC 1 cut(s) 299
AcoI YGGCCR 1 cut(s) 254
AcsI RAATTY 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 261
AdeI CACNNNGTG 1 cut(s) 199
AfiI CCNNNNNNNGG 3 cut(s) 26, 314, 478
AgsI TTSAA 3 cut(s) 344, 521, 644
AluBI AGCT 5 cut(s) 176, 226, 293, 409, 647
AluI AGCT 5 cut(s) 176, 226, 293, 409, 647
Alw21I GWGCWC 2 cut(s) 195, 707
Alw26I GTCTC 1 cut(s) 223
Alw44I GTGCAC 1 cut(s) 191
AlwI GGATC 1 cut(s) 299
AoxI GGCC 2 cut(s) 254, 480
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 5 cut(s) 66, 173, 532, 565, 568
ApoI RAATTY 1 cut(s) 358
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspLEI GCGC 5 cut(s) 71, 101, 561, 563, 565
AspS9I GGNCC 2 cut(s) 89, 481
AsuHPI GGTGA 3 cut(s) 367, 408, 708
AvaII GGWCC 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 195
BanI GGYRCC 1 cut(s) 697
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 195, 707
BbvI GCAGC 5 cut(s) 78, 185, 544, 552, 555
BccI CCATC 2 cut(s) 421, 727
BceAI ACGGC 3 cut(s) 248, 331, 685
BcoDI GTCTC 1 cut(s) 223
BfaI CTAG 2 cut(s) 294, 395
BfmI CTRYAG 1 cut(s) 667
BfoI RGCGCY 1 cut(s) 72
BglII AGATCT 1 cut(s) 372
BisI GCNGC 8 cut(s) 40, 67, 174, 186, 254, 533, 566, 569
BlsI GCNGC 8 cut(s) 41, 68, 175, 187, 255, 534, 567, 570
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 481
BmiI GGNNCC 4 cut(s) 208, 483, 610, 699
BmsI GCATC 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 133, 273
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 1 cut(s) 525
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 4 cut(s) 43, 73, 667, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 314, 478
Bse1I ACTGG 2 cut(s) 28, 682
Bse3DI GCAATG 2 cut(s) 220, 462
BseDI CCNNGG 1 cut(s) 525
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 3 cut(s) 26, 314, 478
BseMI GCAATG 2 cut(s) 220, 462
BseMII CTCAG 2 cut(s) 699, 737
BseNI ACTGG 2 cut(s) 28, 682
BsePI GCGCGC 2 cut(s) 559, 561
BseRI GAGGAG 4 cut(s) 90, 130, 411, 423
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 5 cut(s) 78, 185, 544, 552, 555
BsgI GTGCAG 2 cut(s) 551, 554
Bsh1236I CGCG 3 cut(s) 101, 561, 563
BshFI GGCC 2 cut(s) 256, 482
BshNI GGYRCC 1 cut(s) 697
BsiHKAI GWGCWC 2 cut(s) 195, 707
BsiSI CCGG 4 cut(s) 72, 87, 242, 308
BslI CCNNNNNNNGG 3 cut(s) 26, 314, 478
BsmAI GTCTC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 2 cut(s) 256, 482
Bsp1286I GDGCHC 2 cut(s) 195, 707
Bsp143I GATC 3 cut(s) 304, 372, 637
Bsp19I CCATGG 1 cut(s) 525
BspANI GGCC 2 cut(s) 256, 482
BspCNI CTCAG 2 cut(s) 700, 736
BspFNI CGCG 3 cut(s) 101, 561, 563
BspLI GGNNCC 4 cut(s) 208, 483, 610, 699
BspPI GGATC 1 cut(s) 299
BspQI GCTCTTC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 697
BsrDI GCAATG 2 cut(s) 220, 462
BsrI ACTGG 2 cut(s) 28, 682
BssECI CCNNGG 1 cut(s) 525
BssHII GCGCGC 2 cut(s) 559, 561
BssMI GATC 3 cut(s) 304, 372, 637
BssNI GRCGYC 1 cut(s) 261
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 654
Bst4CI ACNGT 2 cut(s) 93, 274
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 6 cut(s) 211, 387, 492, 561, 563, 595
BstDEI CTNAG 2 cut(s) 708, 723
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 1 cut(s) 140
BstFNI CGCG 3 cut(s) 101, 561, 563
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 5 cut(s) 71, 101, 561, 563, 565
BstKTI GATC 3 cut(s) 307, 375, 640
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 3 cut(s) 304, 372, 637
BstMWI GCNNNNNNNGC 5 cut(s) 39, 182, 395, 565, 670
BstSFI CTRYAG 1 cut(s) 667
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 3 cut(s) 101, 561, 563
BstV1I GCAGC 5 cut(s) 78, 185, 544, 552, 555
BstX2I RGATCY 2 cut(s) 304, 372
BstXI CCANNNNNNTGG 1 cut(s) 543
BstYI RGATCY 2 cut(s) 304, 372
BsuRI GGCC 2 cut(s) 256, 482
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 6 cut(s) 211, 387, 492, 561, 563, 595
CfoI GCGC 5 cut(s) 71, 101, 561, 563, 565
Cfr13I GGNCC 2 cut(s) 89, 481
CpoI CGGWCCG 1 cut(s) 89
CseI GACGC 1 cut(s) 269
CspI CGGWCCG 1 cut(s) 89
CviAII CATG 3 cut(s) 487, 526, 550
DdeI CTNAG 2 cut(s) 708, 723
DpnI GATC 3 cut(s) 306, 374, 639
DpnII GATC 3 cut(s) 304, 372, 637
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 254
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
EciI GGCGGA 1 cut(s) 414
Eco130I CCWWGG 1 cut(s) 525
Eco47I GGWCC 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 525
EcoT22I ATGCAT 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 525
FaeI CATG 3 cut(s) 490, 529, 553
FaiI YATR 9 cut(s) 140, 237, 379, 488, 501, 527, 551, 675, 731
FatI CATG 3 cut(s) 486, 525, 549
FauI CCCGC 2 cut(s) 124, 499
FblI GTMKAC 1 cut(s) 312
Fnu4HI GCNGC 8 cut(s) 40, 67, 174, 186, 254, 533, 566, 569
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 8 cut(s) 40, 67, 174, 186, 254, 533, 566, 569
FspBI CTAG 2 cut(s) 294, 395
GlaI GCGC 5 cut(s) 70, 100, 560, 562, 564
GluI GCNGC 8 cut(s) 40, 67, 174, 186, 254, 533, 566, 569
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 2 cut(s) 256, 482
HapII CCGG 4 cut(s) 72, 87, 242, 308
HgaI GACGC 1 cut(s) 269
HhaI GCGC 5 cut(s) 71, 101, 561, 563, 565
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 3 cut(s) 490, 529, 553
Hin6I GCGC 5 cut(s) 69, 99, 559, 561, 563
HinP1I GCGC 5 cut(s) 69, 99, 559, 561, 563
HindIII AAGCTT 2 cut(s) 224, 645
HinfI GANTC 1 cut(s) 158
HpaII CCGG 4 cut(s) 72, 87, 242, 308
HphI GGTGA 3 cut(s) 367, 408, 708
Hpy166II GTNNAC 3 cut(s) 193, 313, 659
Hpy188I TCNGA 3 cut(s) 163, 206, 709
Hpy188III TCNNGA 2 cut(s) 112, 656
Hpy8I GTNNAC 3 cut(s) 193, 313, 659
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 2 cut(s) 482, 486
HpyCH4III ACNGT 2 cut(s) 93, 274
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 8 cut(s) 138, 146, 193, 385, 467, 532, 553, 571
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 182, 395, 565, 670
HpyF3I CTNAG 2 cut(s) 708, 723
HpySE526I ACGT 1 cut(s) 497
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 3 cut(s) 490, 529, 553
HspAI GCGC 5 cut(s) 69, 99, 559, 561, 563
Kzo9I GATC 3 cut(s) 304, 372, 637
LguI GCTCTTC 1 cut(s) 345
LmnI GCTCC 4 cut(s) 51, 163, 206, 406
Lsp1109I GCAGC 5 cut(s) 78, 185, 544, 552, 555
LweI GCATC 1 cut(s) 125
MaeI CTAG 2 cut(s) 294, 395
MaeII ACGT 1 cut(s) 497
MalI GATC 3 cut(s) 306, 374, 639
MboI GATC 3 cut(s) 304, 372, 637
MboII GAAGA 3 cut(s) 221, 332, 632
MflI RGATCY 2 cut(s) 304, 372
MhlI GDGCHC 2 cut(s) 195, 707
MluCI AATT 1 cut(s) 358
Mph1103I ATGCAT 1 cut(s) 140
MspI CCGG 4 cut(s) 72, 87, 242, 308
Mva1269I GAATGC 1 cut(s) 10
MvnI CGCG 3 cut(s) 101, 561, 563
MwoI GCNNNNNNNGC 5 cut(s) 39, 182, 395, 565, 670
NcoI CCATGG 1 cut(s) 525
NdeII GATC 3 cut(s) 304, 372, 637
NlaIII CATG 3 cut(s) 490, 529, 553
NlaIV GGNNCC 4 cut(s) 208, 483, 610, 699
NmeAIII GCCGAG 1 cut(s) 394
NsiI ATGCAT 1 cut(s) 140
PauI GCGCGC 2 cut(s) 559, 561
PciSI GCTCTTC 1 cut(s) 345
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 8 cut(s) 41, 68, 175, 187, 255, 534, 567, 570
PspN4I GGNNCC 4 cut(s) 208, 483, 610, 699
PspPI GGNCC 2 cut(s) 89, 481
PsuI RGATCY 2 cut(s) 304, 372
PsyI GACNNNGTC 1 cut(s) 263
PteI GCGCGC 2 cut(s) 559, 561
Rsr2I CGGWCCG 1 cut(s) 89
RsrII CGGWCCG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 345
SatI GCNGC 8 cut(s) 40, 67, 174, 186, 254, 533, 566, 569
Sau3AI GATC 3 cut(s) 304, 372, 637
Sau96I GGNCC 2 cut(s) 89, 481
SduI GDGCHC 2 cut(s) 195, 707
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 1 cut(s) 667
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 112, 288
SmoI CTYRAG 2 cut(s) 112, 288
Sse9I AATT 1 cut(s) 358
SspMI CTAG 2 cut(s) 294, 395
StyI CCWWGG 1 cut(s) 525
TaaI ACNGT 2 cut(s) 93, 274
TaiI ACGT 1 cut(s) 500
TaqI TCGA 2 cut(s) 156, 617
TasI AATT 1 cut(s) 358
TauI GCSGC 3 cut(s) 42, 188, 256
TfiI GAWTC 1 cut(s) 158
TscAI CASTG 1 cut(s) 277
TseI GCWGC 5 cut(s) 66, 173, 532, 565, 568
TspDTI ATGAA 2 cut(s) 17, 221
TspGWI ACGGA 1 cut(s) 675
TspRI CASTG 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 263
VneI GTGCAC 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 1 cut(s) 358
XmiI GTMKAC 1 cut(s) 312
XspI CTAG 2 cut(s) 294, 395
Zsp2I ATGCAT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.