Rw1G023130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000506
Physical Location & Seq
Forward (+)
48837452 .. 48847875
10424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023130.1

Sequence Viewer

Length: 660 bp
ATGGTTGATCAGATCGGCATCGTGAGACCTGTGCTGCAATCTCGGTATGAGAATCTGATACTTGTGAGGCTACTTCTGGAGATGAGGGTTCCTTCTAAAAGGGAGTCATCAGTTGCGGGAGGGCTCACAGTGGAGGGGATAGTGGAGAATTGGTCAGAGTTGAAGAGTCTGGTTCTGAAGGAATGGGGTGAGGATAAGGATGCTCTTATAAAGGTGTTTGGAGAGGTCAGGGATGAGTGGAAGGACCAGGACCTGGAAACTTGGACTGCTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTACATTGGCAGCCTCTACCATTTACATTGTCACTGGGAAACAGAGCCGATTTGCCGAGGTAATACTGGAAAAACTTGCAGAAGTTACACTACCACCTGGAAGAATAATTGGAGATGGATCTCGTTCCAGCCGCAAGATAGAAGTACTGAAGCAGCTTCAAGAGAAACCAGAACATCAAGGGCTCAAGCTGCACTTTGTGGAGGATAGACTAGCAACCCTGAAGAAAGTTATTGAAGTACCCGAATTGGATGGTTGGAATTTGTATCTGGGCGGTTGGGGGTACAATACACAGAAAGAGAGAGAGACGAAGCTGCTACAATTCCTAGAATTCAGATTCTTCAGCTTTCGGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

25.07

Weight (kDa)

5.88

Isoelectric Point (pI)

33.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 3 cut(s) 116, 436, 576
AclWI GGATC 1 cut(s) 430
AcsI RAATTY 2 cut(s) 562, 632
AcuI CTGAAG 4 cut(s) 197, 473, 545, 628
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 3 cut(s) 450, 543, 587
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 3 cut(s) 163, 464, 539
AjnI CCWGG 4 cut(s) 246, 252, 286, 400
AluBI AGCT 4 cut(s) 460, 493, 616, 648
AluI AGCT 4 cut(s) 460, 493, 616, 648
Alw26I GTCTC 2 cut(s) 19, 602
AlwI GGATC 1 cut(s) 430
AlwNI CAGNNNCTG 1 cut(s) 253
ApeKI GCWGC 6 cut(s) 34, 269, 314, 457, 493, 616
ApoI RAATTY 2 cut(s) 562, 632
AspS9I GGNCC 2 cut(s) 244, 250
AsuHPI GGTGA 1 cut(s) 200
AvaII GGWCC 2 cut(s) 244, 250
BanII GRGCYC 2 cut(s) 126, 489
BarI GAAGNNNNNNTAC 2 cut(s) 378, 410
BbvI GCAGC 6 cut(s) 21, 256, 326, 469, 480, 603
BccI CCATC 2 cut(s) 413, 548
BciT130I CCWGG 4 cut(s) 248, 254, 288, 402
BciVI GTATCC 1 cut(s) 294
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 19, 602
BfaI CTAG 2 cut(s) 515, 629
BfuI GTATCC 1 cut(s) 294
BisI GCNGC 7 cut(s) 35, 270, 315, 436, 458, 494, 617
BlsI GCNGC 7 cut(s) 36, 271, 316, 437, 459, 495, 618
BmcAI AGTACT 1 cut(s) 450
Bme1390I CCNGG 4 cut(s) 248, 254, 288, 402
Bme18I GGWCC 2 cut(s) 244, 250
BmgT120I GGNCC 2 cut(s) 244, 250
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 4 cut(s) 248, 254, 288, 402
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 3 cut(s) 27, 190, 289
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 473
BsaBI GATNNNNATC 1 cut(s) 17
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse1I ACTGG 2 cut(s) 343, 375
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 4 cut(s) 248, 254, 288, 402
BseDI CCNNGG 1 cut(s) 360
BseGI GGATG 3 cut(s) 205, 238, 559
BseJI GATNNNNATC 1 cut(s) 17
BseLI CCNNNNNNNGG 1 cut(s) 253
BseNI ACTGG 2 cut(s) 343, 375
BseXI GCAGC 6 cut(s) 21, 256, 326, 469, 480, 603
BsgI GTGCAG 1 cut(s) 479
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 19, 602
BsmBI CGTCTC 1 cut(s) 602
Bso31I GGTCTC 1 cut(s) 19
Bsp1286I GDGCHC 2 cut(s) 126, 489
Bsp143I GATC 3 cut(s) 7, 12, 422
BspACI CCGC 3 cut(s) 116, 436, 576
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 19
BsrI ACTGG 2 cut(s) 343, 375
BssECI CCNNGG 1 cut(s) 360
BssMI GATC 3 cut(s) 7, 12, 422
Bst2UI CCWGG 4 cut(s) 248, 254, 288, 402
Bst4CI ACNGT 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 158
BstF5I GGATG 3 cut(s) 205, 238, 559
BstKTI GATC 3 cut(s) 10, 15, 425
BstMAI GTCTC 2 cut(s) 19, 602
BstMBI GATC 3 cut(s) 7, 12, 422
BstMWI GCNNNNNNNGC 1 cut(s) 493
BstNI CCWGG 4 cut(s) 248, 254, 288, 402
BstSCI CCNGG 4 cut(s) 246, 252, 286, 400
BstV1I GCAGC 6 cut(s) 21, 256, 326, 469, 480, 603
BstX2I RGATCY 1 cut(s) 422
BstYI RGATCY 1 cut(s) 422
BsuI GTATCC 1 cut(s) 294
BtsCI GGATG 3 cut(s) 205, 238, 559
BtsIMutI CAGTG 2 cut(s) 135, 336
CaiI CAGNNNCTG 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 244, 250
Csp6I GTAC 3 cut(s) 449, 542, 586
CviQI GTAC 3 cut(s) 449, 542, 586
DpnI GATC 3 cut(s) 9, 14, 424
DpnII GATC 3 cut(s) 7, 12, 422
DraIII CACNNNGTG 1 cut(s) 502
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 2 cut(s) 126, 489
Eco31I GGTCTC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 244, 250
Eco57I CTGAAG 4 cut(s) 197, 473, 545, 628
EcoO109I RGGNCCY 1 cut(s) 250
EcoRI GAATTC 1 cut(s) 632
EcoRII CCWGG 4 cut(s) 246, 252, 286, 400
EcoT38I GRGCYC 2 cut(s) 126, 489
Esp3I CGTCTC 1 cut(s) 602
FaiI YATR 2 cut(s) 48, 209
FalI AAGNNNNNCTT 2 cut(s) 482, 514
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 7 cut(s) 35, 270, 315, 436, 458, 494, 617
FokI GGATG 3 cut(s) 212, 245, 566
FriOI GRGCYC 2 cut(s) 126, 489
Fsp4HI GCNGC 7 cut(s) 35, 270, 315, 436, 458, 494, 617
FspBI CTAG 2 cut(s) 515, 629
GluI GCNGC 7 cut(s) 35, 270, 315, 436, 458, 494, 617
GsuI CTGGAG 1 cut(s) 98
HinfI GANTC 4 cut(s) 52, 104, 166, 639
HphI GGTGA 1 cut(s) 200
Hpy188I TCNGA 6 cut(s) 12, 57, 157, 177, 638, 654
Hpy188III TCNNGA 3 cut(s) 22, 77, 464
HpyAV CCTTC 3 cut(s) 102, 172, 235
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4V TGCA 4 cut(s) 37, 272, 383, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 493
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 3 cut(s) 7, 12, 422
Lsp1109I GCAGC 6 cut(s) 21, 256, 326, 469, 480, 603
LweI GCATC 3 cut(s) 27, 190, 289
MaeI CTAG 2 cut(s) 515, 629
MaeIII GTNAC 2 cut(s) 334, 388
MalI GATC 3 cut(s) 9, 14, 424
MboI GATC 3 cut(s) 7, 12, 422
MboII GAAGA 4 cut(s) 175, 417, 538, 634
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 2 cut(s) 126, 489
MluCI AATT 6 cut(s) 148, 411, 548, 562, 623, 632
MlyI GAGTC 2 cut(s) 113, 175
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 9 cut(s) 60, 78, 113, 127, 184, 217, 328, 355, 499
MseI TTAA 1 cut(s) 658
MspR9I CCNGG 4 cut(s) 248, 254, 288, 402
MvaI CCWGG 4 cut(s) 248, 254, 288, 402
MwoI GCNNNNNNNGC 1 cut(s) 493
NdeII GATC 3 cut(s) 7, 12, 422
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 52, 639
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 7 cut(s) 36, 271, 316, 437, 459, 495, 618
PleI GAGTC 2 cut(s) 112, 174
PpsI GAGTC 2 cut(s) 112, 174
PpuMI RGGWCCY 1 cut(s) 250
PsiI TTATAA 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 4 cut(s) 246, 252, 286, 400
PspGI CCWGG 4 cut(s) 246, 252, 286, 400
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 2 cut(s) 244, 250
PspPPI RGGWCCY 1 cut(s) 250
PstNI CAGNNNCTG 1 cut(s) 253
PsuI RGATCY 1 cut(s) 422
RsaI GTAC 3 cut(s) 450, 543, 587
RsaNI GTAC 3 cut(s) 449, 542, 586
SaqAI TTAA 1 cut(s) 658
SatI GCNGC 7 cut(s) 35, 270, 315, 436, 458, 494, 617
Sau3AI GATC 3 cut(s) 7, 12, 422
Sau96I GGNCC 2 cut(s) 244, 250
ScaI AGTACT 1 cut(s) 450
SchI GAGTC 2 cut(s) 113, 175
ScrFI CCNGG 4 cut(s) 248, 254, 288, 402
SduI GDGCHC 2 cut(s) 126, 489
SfaNI GCATC 3 cut(s) 27, 190, 289
SinI GGWCC 2 cut(s) 244, 250
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 6 cut(s) 148, 411, 548, 562, 623, 632
SsiI CCGC 3 cut(s) 116, 436, 576
SspMI CTAG 2 cut(s) 515, 629
StyD4I CCNGG 4 cut(s) 246, 252, 286, 400
TaaI ACNGT 1 cut(s) 130
TasI AATT 6 cut(s) 148, 411, 548, 562, 623, 632
TatI WGTACW 1 cut(s) 448
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 2 cut(s) 52, 639
Tru1I TTAA 1 cut(s) 658
Tru9I TTAA 1 cut(s) 658
TscAI CASTG 2 cut(s) 135, 343
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 6 cut(s) 34, 269, 314, 457, 493, 616
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 2 cut(s) 135, 343
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 2 cut(s) 244, 250
XapI RAATTY 2 cut(s) 562, 632
XspI CTAG 2 cut(s) 515, 629
ZrmI AGTACT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.