Rroxscaffold_4G00299790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000506
Physical Location & Seq
Reverse (-)
19726503 .. 19726994
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299790.1

Sequence Viewer

Length: 294 bp
ATGACGGTATCTCCAATTCGCCAAGAGAGCAAATCGGAAAAGAATCCACATTGCAAACGACCTGAACGACGTCGCAGAAAACGAAAAGGACGAAACTTGGGGCAAGAAGTCTACACCCTCTTCCAATGTCAACCCACCACTCCACCAGAGATCCAGGTGCAGATGATGAACCAGCATTCCGGGCCGGCGGAATGTGCGAAAGAAAACACCTTTCACTTTTTTGTCGTCAGTCTGATATCAGACAAATGTGATGCAGTGGATTATAGACGCCATGTCGTTTGGGACCAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.46

Weight (kDa)

9.46

Isoelectric Point (pI)

66.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 111
AciI CCGC 1 cut(s) 188
AclWI GGATC 1 cut(s) 145
AcyI GRCGYC 2 cut(s) 70, 268
AhdI GACNNNNNGTC 1 cut(s) 272
AjnI CCWGG 1 cut(s) 153
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 182, 283
AsuC2I CCSGG 1 cut(s) 181
AvaII GGWCC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 155, 181
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 182, 283
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 2 cut(s) 155, 181
BmsI GCATC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 181
BsaHI GRCGYC 2 cut(s) 70, 268
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 184
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 49
BsgI GTGCAG 1 cut(s) 179
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 2 cut(s) 180, 185
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 184
BssMI GATC 1 cut(s) 150
BssNI GRCGYC 2 cut(s) 70, 268
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 70, 268
BstC8I GCNNGC 1 cut(s) 186
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 27, 181, 194
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 153, 179
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 2 cut(s) 182, 283
CseI GACGC 1 cut(s) 276
CviAII CATG 1 cut(s) 272
CviJI RGCY 1 cut(s) 184
CviKI_1 RGCY 1 cut(s) 184
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 125
EciI GGCGGA 1 cut(s) 203
Eco32I GATATC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 237
FaeI CATG 1 cut(s) 275
FaiI YATR 2 cut(s) 264, 273
FatI CATG 1 cut(s) 271
FblI GTMKAC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 184
HapII CCGG 2 cut(s) 180, 185
HgaI GACGC 1 cut(s) 276
Hin1I GRCGYC 2 cut(s) 70, 268
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 1 cut(s) 43
HpaII CCGG 2 cut(s) 180, 185
Hpy166II GTNNAC 2 cut(s) 112, 131
Hpy188I TCNGA 3 cut(s) 37, 234, 241
Hpy8I GTNNAC 2 cut(s) 112, 131
Hpy99I CGWCG 2 cut(s) 72, 75
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 3 cut(s) 54, 160, 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 181, 194
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 2 cut(s) 70, 268
Hsp92II CATG 1 cut(s) 275
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 7 cut(s) 75, 140, 159, 167, 185, 193, 198
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 70
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 150
MluCI AATT 1 cut(s) 15
MnlI CCTC 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 184
MspI CCGG 2 cut(s) 180, 185
MspR9I CCNGG 2 cut(s) 155, 181
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 3 cut(s) 27, 181, 194
NaeI GCCGGC 1 cut(s) 186
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 150
NgoMIV GCCGGC 1 cut(s) 184
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 3 cut(s) 64, 79, 88
PctI GAATGC 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 182, 283
PsuI RGATCY 1 cut(s) 150
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 182, 283
ScrFI CCNGG 2 cut(s) 155, 181
SetI ASST 4 cut(s) 64, 73, 159, 212
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 1 cut(s) 283
Sse9I AATT 1 cut(s) 15
SsiI CCGC 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 153, 179
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 73
TasI AATT 1 cut(s) 15
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 261
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 111
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.