Rmu_sc0014206.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014206.1
OG0000506
Physical Location & Seq
Reverse (-)
53661 .. 56003
2343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014206.1_g000012.1.cds

Sequence Viewer

Length: 990 bp
atgtcgcagaaaacgaaaaggacgaaacttggggcaagaagtctacaccctcttccaatgtcaacccaccactccaccagagatccaggtggagatgatgaaccagcattccgggccaaattcgggttacggactcggacctccgtcacagaaaccaaggtaaggaccagagggagtgaagaaatgggggatttgtacgctttggatttcgatggagttatctgtgatagctgcggagagagctccgtctctgctgtgaaggctgctaaagtgagatggccagctctgttcaagggtgttgattcggctttagagaattgggttgttgatcaaatgcacgtagtgagacctgtggtggaaactgggtatgagaatcttttacttgtgaggttacttctggagatgagaattccttctataaggaagtcatcagttgcagaagggctcacagtggaaggaatattggagaagtggtcagcattgaagcctgtgattatggaggaatggggtgaggaaagggatcctcttgtaaatctgttcggaaaggtcagagatgagtggatggaccaggacttgaatacttggattggtgcaaatagattatatccaggtgtatctgatgctctaagatttgcaagctcgacaatatatatagtcaccacaaagcagagccgatttgctgacgctttactgcgagaacttgccggagttacaataccacctgaaagaatatttggtcttggatctggtcctaaggtagaagtattgaagatgcttcagaagaaaccagaacatcaagggctgaaactgcactttgtggaagatagactggcaaccctaaagaatgttattaaagaacctgaattggatggttggagcttgtatctaggggattgggggtacaatacagaggaagagagagacgaagctgctagaatctccaggattcagattcttcagctctctgacttcagcacaaagttgaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

37.07

Weight (kDa)

6.36

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 43
AciI CCGC 1 cut(s) 234
AclWI GGATC 4 cut(s) 77, 515, 528, 751
AcoI YGGCCR 1 cut(s) 278
AcsI RAATTY 2 cut(s) 119, 408
AcuI CTGAAG 3 cut(s) 761, 941, 955
AdeI CACNNNGTG 2 cut(s) 343, 817
AfaI GTAC 2 cut(s) 197, 902
AfiI CCNNNNNNNGG 2 cut(s) 123, 162
AgsI TTSAA 5 cut(s) 292, 484, 577, 769, 985
AjnI CCWGG 4 cut(s) 85, 567, 607, 941
AjuI GAANNNNNNNTTGG 2 cut(s) 717, 749
AloI GAACNNNNNNTCC 2 cut(s) 93, 125
AluBI AGCT 7 cut(s) 231, 243, 284, 639, 879, 929, 961
AluI AGCT 7 cut(s) 231, 243, 284, 639, 879, 929, 961
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 3 cut(s) 253, 340, 915
AlwI GGATC 4 cut(s) 77, 515, 528, 751
AoxI GGCC 2 cut(s) 114, 278
ApeKI GCWGC 3 cut(s) 231, 263, 929
ApoI RAATTY 2 cut(s) 119, 408
Asp700I GAANNNNTTC 1 cut(s) 412
AspS9I GGNCC 5 cut(s) 114, 138, 165, 565, 749
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 521, 649
AvaII GGWCC 4 cut(s) 138, 165, 565, 749
AxyI CCTNAGG 1 cut(s) 753
BalI TGGCCA 1 cut(s) 280
BamHI GGATCC 1 cut(s) 520
BanII GRGCYC 2 cut(s) 245, 447
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 3 cut(s) 218, 250, 916
BccI CCATC 4 cut(s) 206, 270, 556, 863
BciT130I CCWGG 4 cut(s) 87, 569, 609, 943
BclI TGATCA 1 cut(s) 328
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 253, 340, 915
BfaI CTAG 2 cut(s) 887, 933
BisI GCNGC 3 cut(s) 232, 264, 930
BlsI GCNGC 3 cut(s) 233, 265, 931
Bme1390I CCNGG 5 cut(s) 87, 113, 569, 609, 943
Bme18I GGWCC 4 cut(s) 138, 165, 565, 749
BmgT120I GGNCC 5 cut(s) 114, 138, 165, 565, 749
BmiI GGNNCC 1 cut(s) 522
BmrFI CCNGG 5 cut(s) 87, 113, 569, 609, 943
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 610, 762
BmuI ACTGGG 1 cut(s) 372
BoxI GACNNNNGTC 1 cut(s) 143
BpmI CTGGAG 2 cut(s) 419, 925
BpuMI CCSGG 1 cut(s) 113
BsaAI YACGTR 1 cut(s) 340
BsaI GGTCTC 1 cut(s) 340
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 162
Bse1I ACTGG 2 cut(s) 367, 834
Bse21I CCTNAGG 1 cut(s) 753
BseBI CCWGG 4 cut(s) 87, 569, 609, 943
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 567, 874
BseLI CCNNNNNNNGG 2 cut(s) 123, 162
BseNI ACTGG 2 cut(s) 367, 834
BseXI GCAGC 3 cut(s) 218, 250, 916
BsgI GTGCAG 1 cut(s) 794
BshFI GGCC 2 cut(s) 116, 280
BsiHKAI GWGCWC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 112, 705
BslI CCNNNNNNNGG 2 cut(s) 123, 162
BsmAI GTCTC 3 cut(s) 253, 340, 915
BsmBI CGTCTC 2 cut(s) 253, 915
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 2 cut(s) 116, 280
Bso31I GGTCTC 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 245, 447
Bsp143I GATC 4 cut(s) 82, 328, 520, 743
BspACI CCGC 1 cut(s) 234
BspANI GGCC 2 cut(s) 116, 280
BspLI GGNNCC 1 cut(s) 522
BspPI GGATC 4 cut(s) 77, 515, 528, 751
BspTNI GGTCTC 1 cut(s) 340
BsrI ACTGG 2 cut(s) 367, 834
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 4 cut(s) 82, 328, 520, 743
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 4 cut(s) 87, 569, 609, 943
Bst4CI ACNGT 1 cut(s) 451
Bst6I CTCTTC 2 cut(s) 57, 909
BstBAI YACGTR 1 cut(s) 340
BstC8I GCNNGC 2 cut(s) 282, 637
BstDEI CTNAG 2 cut(s) 626, 753
BstF5I GGATG 2 cut(s) 567, 874
BstKTI GATC 4 cut(s) 85, 331, 523, 746
BstMAI GTCTC 3 cut(s) 253, 340, 915
BstMBI GATC 4 cut(s) 82, 328, 520, 743
BstMWI GCNNNNNNNGC 4 cut(s) 113, 240, 260, 808
BstNI CCWGG 4 cut(s) 87, 569, 609, 943
BstPAI GACNNNNGTC 1 cut(s) 143
BstSCI CCNGG 5 cut(s) 85, 111, 567, 607, 941
BstV1I GCAGC 3 cut(s) 218, 250, 916
BstX2I RGATCY 3 cut(s) 82, 520, 743
BstYI RGATCY 3 cut(s) 82, 520, 743
Bsu36I CCTNAGG 1 cut(s) 753
BsuRI GGCC 2 cut(s) 116, 280
BtsCI GGATG 2 cut(s) 567, 874
BtsIMutI CAGTG 1 cut(s) 456
Cac8I GCNNGC 2 cut(s) 282, 637
Cfr13I GGNCC 5 cut(s) 114, 138, 165, 565, 749
CseI GACGC 1 cut(s) 692
Csp6I GTAC 2 cut(s) 196, 901
CviQI GTAC 2 cut(s) 196, 901
DdeI CTNAG 2 cut(s) 626, 753
DpnI GATC 4 cut(s) 84, 330, 522, 745
DpnII GATC 4 cut(s) 82, 328, 520, 743
DraIII CACNNNGTG 2 cut(s) 343, 817
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 2 cut(s) 57, 909
EarI CTCTTC 2 cut(s) 57, 909
Ecl136II GAGCTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 2 cut(s) 245, 447
Eco31I GGTCTC 1 cut(s) 340
Eco47I GGWCC 4 cut(s) 138, 165, 565, 749
Eco53kI GAGCTC 1 cut(s) 243
Eco57I CTGAAG 3 cut(s) 761, 941, 955
Eco81I CCTNAGG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 4 cut(s) 85, 567, 607, 941
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 2 cut(s) 245, 447
ErhI CCWWGG 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 253, 915
FaiI YATR 7 cut(s) 369, 419, 497, 604, 649, 651, 653
FbaI TGATCA 1 cut(s) 328
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 3 cut(s) 232, 264, 930
FokI GGATG 2 cut(s) 574, 881
FriOI GRGCYC 2 cut(s) 245, 447
Fsp4HI GCNGC 3 cut(s) 232, 264, 930
FspBI CTAG 2 cut(s) 887, 933
GluI GCNGC 3 cut(s) 232, 264, 930
GsuI CTGGAG 2 cut(s) 419, 925
HaeIII GGCC 2 cut(s) 116, 280
HapII CCGG 2 cut(s) 112, 705
HgaI GACGC 1 cut(s) 692
HincII GTYRAC 1 cut(s) 63
HindII GTYRAC 1 cut(s) 63
HinfI GANTC 6 cut(s) 133, 302, 373, 936, 946, 952
HpaII CCGG 2 cut(s) 112, 705
HphI GGTGA 2 cut(s) 521, 649
Hpy166II GTNNAC 2 cut(s) 44, 63
Hpy188I TCNGA 7 cut(s) 138, 542, 551, 619, 780, 951, 967
Hpy188III TCNNGA 1 cut(s) 398
Hpy8I GTNNAC 2 cut(s) 44, 63
HpyAV CCTTC 4 cut(s) 253, 423, 434, 449
HpyCH4III ACNGT 1 cut(s) 451
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 5 cut(s) 337, 437, 593, 635, 811
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 240, 260, 808
HpyF3I CTNAG 2 cut(s) 626, 753
HpySE526I ACGT 1 cut(s) 339
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 82, 328, 520, 743
LmnI GCTCC 2 cut(s) 248, 876
Lsp1109I GCAGC 3 cut(s) 218, 250, 916
LweI GCATC 2 cut(s) 610, 762
MaeI CTAG 2 cut(s) 887, 933
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 5 cut(s) 126, 145, 390, 655, 709
MalI GATC 4 cut(s) 84, 330, 522, 745
MboI GATC 4 cut(s) 82, 328, 520, 743
MboII GAAGA 7 cut(s) 44, 191, 781, 793, 833, 926, 947
MflI RGATCY 3 cut(s) 82, 520, 743
MhlI GDGCHC 2 cut(s) 245, 447
MlsI TGGCCA 1 cut(s) 280
MluCI AATT 4 cut(s) 119, 316, 408, 863
MluNI TGGCCA 1 cut(s) 280
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 1 cut(s) 854
MnlI CCTC 8 cut(s) 60, 151, 164, 381, 493, 505, 534, 904
Mox20I TGGCCA 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 412
MscI TGGCCA 1 cut(s) 280
MseI TTAA 1 cut(s) 852
Msp20I TGGCCA 1 cut(s) 280
MspI CCGG 2 cut(s) 112, 705
MspR9I CCNGG 5 cut(s) 87, 113, 569, 609, 943
Mva1269I GAATGC 1 cut(s) 107
MvaI CCWGG 4 cut(s) 87, 569, 609, 943
MwoI GCNNNNNNNGC 4 cut(s) 113, 240, 260, 808
NciI CCSGG 1 cut(s) 113
NdeII GATC 4 cut(s) 82, 328, 520, 743
NlaIV GGNNCC 1 cut(s) 522
NmuCI GTSAC 2 cut(s) 145, 655
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 20
PctI GAATGC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 5 cut(s) 302, 373, 936, 946, 952
PfoI TCCNGGA 1 cut(s) 941
PkrI GCNGC 3 cut(s) 233, 265, 931
PleI GAGTC 1 cut(s) 127
PpsI GAGTC 1 cut(s) 127
Ppu21I YACGTR 1 cut(s) 340
PshAI GACNNNNGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 245
Psp6I CCWGG 4 cut(s) 85, 567, 607, 941
PspGI CCWGG 4 cut(s) 85, 567, 607, 941
PspN4I GGNNCC 1 cut(s) 522
PspPI GGNCC 5 cut(s) 114, 138, 165, 565, 749
PsuI RGATCY 3 cut(s) 82, 520, 743
RsaI GTAC 2 cut(s) 197, 902
RsaNI GTAC 2 cut(s) 196, 901
SacI GAGCTC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 852
SatI GCNGC 3 cut(s) 232, 264, 930
Sau3AI GATC 4 cut(s) 82, 328, 520, 743
Sau96I GGNCC 5 cut(s) 114, 138, 165, 565, 749
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 5 cut(s) 87, 113, 569, 609, 943
SduI GDGCHC 2 cut(s) 245, 447
SfaNI GCATC 2 cut(s) 610, 762
SinI GGWCC 4 cut(s) 138, 165, 565, 749
Sse9I AATT 4 cut(s) 119, 316, 408, 863
SsiI CCGC 1 cut(s) 234
SspI AATATT 2 cut(s) 462, 732
SspMI CTAG 2 cut(s) 887, 933
SstI GAGCTC 1 cut(s) 245
StyD4I CCNGG 5 cut(s) 85, 111, 567, 607, 941
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 451
TaiI ACGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 210, 641
TasI AATT 4 cut(s) 119, 316, 408, 863
TfiI GAWTC 5 cut(s) 302, 373, 936, 946, 952
Tru1I TTAA 1 cut(s) 852
Tru9I TTAA 1 cut(s) 852
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 2 cut(s) 145, 655
TseI GCWGC 3 cut(s) 231, 263, 929
Tsp45I GTSAC 2 cut(s) 145, 655
TspDTI ATGAA 1 cut(s) 114
TspGWI ACGGA 3 cut(s) 133, 145, 235
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 4 cut(s) 138, 165, 565, 749
XapI RAATTY 2 cut(s) 119, 408
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 2 cut(s) 887, 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.