Rorug01G0249200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000506
Physical Location & Seq
Reverse (-)
35736416 .. 35739377
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0249200.1

Sequence Viewer

Length: 654 bp
ATGAGTAGGGGAAGTACTAATGTTGAAAATAATGGAGGAGGATCCCAAGGCGGACCTTGCGGTGCTTGCAAGTTCCTCAGGCGAAAGTGCTTGAGAGGCTGCATATTTGCGCCCTATTTCGACTCAGATCAAGGCACAGCTCACTTCGCGGCGGTGCACAAAGTTTTCGGTGCAAGCAACGCCTCCAAGCTACTCCTGCGCATACCGGCTCACAAGAGGCTCGATGCTGTGGTCACTCTTTGCTATGAGGCTTTTGCTAGGGTTCGAGACCCGGTTTATGGCTGCGTTGCTCACATTTTCACCCTCCAGCAGCAGGTAGTGAATTTGCAGGCAGAGTTGGCCTATGTTCAGGCCCGTCTTGCTACCTTTCAGCGTCTGCCGCCGCCATCGCCCCCGCCTCAACCTCAGAGCCTTCATTCCTTGGCCAATGTTGTGGCCTCATCCTCAGATTTGGTACCAATTTCCAACTTAATGATGCATTTTGATCCTCTTCAAACACAGCAGTGTGCAGGTCAAGAAATGACGAGCCTTTTCAATCCACTGGATCAAGAACTCATCGATGGTGAAGATCTCCAAATATTAGCACGAGAATTTGTCTCCCGCTATTTGCCGGGAGTGAGGTTCCGGCCTCCAGGTCCTCACCAAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.83

Weight (kDa)

8.52

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 19 - 117 7.7e-35 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 200
Acc36I ACCTGC 2 cut(s) 304, 500
Acc65I GGTACC 1 cut(s) 454
AccB1I GGYRCC 1 cut(s) 454
AccII CGCG 1 cut(s) 149
AciI CCGC 8 cut(s) 51, 60, 149, 152, 380, 383, 395, 601
AclWI GGATC 4 cut(s) 36, 49, 479, 552
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 3 cut(s) 322, 590, 646
AfaI GTAC 2 cut(s) 16, 456
AfiI CCNNNNNNNGG 2 cut(s) 278, 313
AgsI TTSAA 3 cut(s) 26, 494, 535
AjnI CCWGG 1 cut(s) 631
AleI CACNNNNGTG 1 cut(s) 502
AluBI AGCT 2 cut(s) 140, 190
AluI AGCT 2 cut(s) 140, 190
Alw21I GWGCWC 1 cut(s) 159
Alw26I GTCTC 2 cut(s) 261, 601
Alw44I GTGCAC 1 cut(s) 155
AlwI GGATC 4 cut(s) 36, 49, 479, 552
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 5 cut(s) 339, 351, 423, 435, 626
ApaLI GTGCAC 1 cut(s) 155
ApeKI GCWGC 3 cut(s) 99, 282, 310
ApoI RAATTY 3 cut(s) 322, 590, 646
Asp718I GGTACC 1 cut(s) 454
AspLEI GCGC 2 cut(s) 112, 201
AspS9I GGNCC 3 cut(s) 53, 352, 635
AsuC2I CCSGG 2 cut(s) 272, 612
AsuHPI GGTGA 3 cut(s) 292, 575, 632
AvaII GGWCC 2 cut(s) 53, 635
AxyI CCTNAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 425
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 454
BauI CACGAG 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 3 cut(s) 86, 269, 322
BccI CCATC 2 cut(s) 394, 554
BciT130I CCWGG 1 cut(s) 633
BcnI CCSGG 2 cut(s) 272, 612
BcoDI GTCTC 2 cut(s) 261, 601
BfaI CTAG 1 cut(s) 258
BfuAI ACCTGC 2 cut(s) 304, 500
BglII AGATCT 1 cut(s) 568
BisI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
BlsI GCNGC 6 cut(s) 101, 151, 284, 312, 381, 384
BmcAI AGTACT 1 cut(s) 16
Bme1390I CCNGG 3 cut(s) 272, 612, 633
Bme18I GGWCC 2 cut(s) 53, 635
BmgT120I GGNCC 3 cut(s) 53, 352, 635
BmiI GGNNCC 3 cut(s) 43, 456, 623
BmrFI CCNGG 3 cut(s) 272, 612, 633
BmsI GCATC 2 cut(s) 214, 465
BpmI CTGGAG 2 cut(s) 290, 615
BpuEI CTTGAG 1 cut(s) 112
BpuMI CCSGG 2 cut(s) 272, 612
Bsa29I ATCGAT 1 cut(s) 558
BsaI GGTCTC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 46, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 313
Bse118I RCCGGY 1 cut(s) 205
Bse1I ACTGG 1 cut(s) 546
Bse21I CCTNAGG 1 cut(s) 77
BseBI CCWGG 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 558
BseDI CCNNGG 2 cut(s) 46, 420
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 2 cut(s) 278, 313
BseMII CTCAG 4 cut(s) 91, 138, 419, 459
BseNI ACTGG 1 cut(s) 546
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 159
BseXI GCAGC 3 cut(s) 86, 269, 322
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 5 cut(s) 341, 353, 425, 437, 628
BshNI GGYRCC 1 cut(s) 454
BshVI ATCGAT 1 cut(s) 558
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 4 cut(s) 206, 272, 611, 625
BslI CCNNNNNNNGG 2 cut(s) 278, 313
BsmAI GTCTC 2 cut(s) 261, 601
BsnI GGCC 5 cut(s) 341, 353, 425, 437, 628
Bso31I GGTCTC 1 cut(s) 261
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 5 cut(s) 41, 127, 484, 544, 568
BspACI CCGC 8 cut(s) 51, 60, 149, 152, 380, 383, 395, 601
BspANI GGCC 5 cut(s) 341, 353, 425, 437, 628
BspCNI CTCAG 4 cut(s) 90, 137, 418, 458
BspDI ATCGAT 1 cut(s) 558
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 3 cut(s) 43, 456, 623
BspMI ACCTGC 2 cut(s) 304, 500
BspPI GGATC 4 cut(s) 36, 49, 479, 552
BspT107I GGYRCC 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 261
BsrFI RCCGGY 1 cut(s) 205
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 46, 420
BssMI GATC 5 cut(s) 41, 127, 484, 544, 568
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 46, 420
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 1 cut(s) 633
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 67, 175, 330
BstDEI CTNAG 4 cut(s) 77, 124, 405, 445
BstF5I GGATG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 2 cut(s) 112, 201
BstKTI GATC 5 cut(s) 44, 130, 487, 547, 571
BstMAI GTCTC 2 cut(s) 261, 601
BstMBI GATC 5 cut(s) 41, 127, 484, 544, 568
BstNI CCWGG 1 cut(s) 633
BstSCI CCNGG 3 cut(s) 270, 610, 631
BstSLI GKGCMC 1 cut(s) 159
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 3 cut(s) 86, 269, 322
BstX2I RGATCY 2 cut(s) 41, 568
BstXI CCANNNNNNTGG 1 cut(s) 433
BstYI RGATCY 2 cut(s) 41, 568
Bsu15I ATCGAT 1 cut(s) 558
Bsu36I CCTNAGG 1 cut(s) 77
BsuRI GGCC 5 cut(s) 341, 353, 425, 437, 628
BsuTUI ATCGAT 1 cut(s) 558
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 1 cut(s) 440
BtsI GCAGTG 1 cut(s) 509
BtsIMutI CAGTG 2 cut(s) 509, 539
BveI ACCTGC 2 cut(s) 304, 500
Cac8I GCNNGC 3 cut(s) 67, 175, 330
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 2 cut(s) 112, 201
Cfr10I RCCGGY 1 cut(s) 205
Cfr13I GGNCC 3 cut(s) 53, 352, 635
ClaI ATCGAT 1 cut(s) 558
CseI GACGC 1 cut(s) 362
Csp6I GTAC 2 cut(s) 15, 455
CviQI GTAC 2 cut(s) 15, 455
DdeI CTNAG 4 cut(s) 77, 124, 405, 445
DpnI GATC 5 cut(s) 43, 129, 486, 546, 570
DpnII GATC 5 cut(s) 41, 127, 484, 544, 568
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
EciI GGCGGA 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 46, 420
Eco31I GGTCTC 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 53, 635
Eco81I CCTNAGG 1 cut(s) 77
EcoO109I RGGNCCY 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 631
EcoT14I CCWWGG 2 cut(s) 46, 420
EcoT22I ATGCAT 1 cut(s) 480
ErhI CCWWGG 2 cut(s) 46, 420
FaiI YATR 5 cut(s) 104, 203, 246, 279, 345
FauI CCCGC 2 cut(s) 402, 608
Fnu4HI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
FspBI CTAG 1 cut(s) 258
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 111, 200
GluI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
GsuI CTGGAG 2 cut(s) 290, 615
HaeIII GGCC 5 cut(s) 341, 353, 425, 437, 628
HapII CCGG 4 cut(s) 206, 272, 611, 625
HgaI GACGC 1 cut(s) 362
HhaI GCGC 2 cut(s) 112, 201
Hin6I GCGC 2 cut(s) 110, 199
HinP1I GCGC 2 cut(s) 110, 199
HinfI GANTC 1 cut(s) 122
HpaII CCGG 4 cut(s) 206, 272, 611, 625
HphI GGTGA 3 cut(s) 292, 575, 632
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 127, 408, 448
Hpy188III TCNNGA 3 cut(s) 266, 515, 548
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 422
HpyCH4V TGCA 7 cut(s) 69, 102, 157, 173, 328, 478, 509
HpyF3I CTNAG 4 cut(s) 77, 124, 405, 445
HspAI GCGC 2 cut(s) 110, 199
KpnI GGTACC 1 cut(s) 458
Kzo9I GATC 5 cut(s) 41, 127, 484, 544, 568
Lsp1109I GCAGC 3 cut(s) 86, 269, 322
LweI GCATC 2 cut(s) 214, 465
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 232
MalI GATC 5 cut(s) 43, 129, 486, 546, 570
MboI GATC 5 cut(s) 41, 127, 484, 544, 568
MboII GAAGA 2 cut(s) 482, 578
MflI RGATCY 2 cut(s) 41, 568
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 4 cut(s) 322, 459, 590, 646
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 489
Mox20I TGGCCA 1 cut(s) 425
Mph1103I ATGCAT 1 cut(s) 480
MscI TGGCCA 1 cut(s) 425
MseI TTAA 1 cut(s) 470
MslI CAYNNNNRTG 1 cut(s) 502
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 4 cut(s) 206, 272, 611, 625
MspR9I CCNGG 3 cut(s) 272, 612, 633
MvaI CCWGG 1 cut(s) 633
MvnI CGCG 1 cut(s) 149
NciI CCSGG 2 cut(s) 272, 612
NdeII GATC 5 cut(s) 41, 127, 484, 544, 568
NlaIV GGNNCC 3 cut(s) 43, 456, 623
NmuCI GTSAC 1 cut(s) 232
NsbI TGCGCA 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 502
PkrI GCNGC 6 cut(s) 101, 151, 284, 312, 381, 384
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PpuMI RGGWCCY 1 cut(s) 635
Psp5II RGGWCCY 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 631
PspGI CCWGG 1 cut(s) 631
PspN4I GGNNCC 3 cut(s) 43, 456, 623
PspPI GGNCC 3 cut(s) 53, 352, 635
PspPPI RGGWCCY 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 41, 568
RsaI GTAC 2 cut(s) 16, 456
RsaNI GTAC 2 cut(s) 15, 455
RseI CAYNNNNRTG 1 cut(s) 502
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 6 cut(s) 100, 150, 283, 311, 380, 383
Sau3AI GATC 5 cut(s) 41, 127, 484, 544, 568
Sau96I GGNCC 3 cut(s) 53, 352, 635
ScaI AGTACT 1 cut(s) 16
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 3 cut(s) 272, 612, 633
SduI GDGCHC 1 cut(s) 159
SetI ASST 9 cut(s) 58, 142, 192, 318, 368, 406, 514, 623, 637
SfaNI GCATC 2 cut(s) 214, 465
SinI GGWCC 2 cut(s) 53, 635
SmiMI CAYNNNNRTG 1 cut(s) 502
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 4 cut(s) 322, 459, 590, 646
SsiI CCGC 8 cut(s) 51, 60, 149, 152, 380, 383, 395, 601
SspI AATATT 1 cut(s) 579
SspMI CTAG 1 cut(s) 258
StyD4I CCNGG 3 cut(s) 270, 610, 631
StyI CCWWGG 2 cut(s) 46, 420
TaqI TCGA 4 cut(s) 120, 222, 265, 558
TasI AATT 4 cut(s) 322, 459, 590, 646
TatI WGTACW 1 cut(s) 14
TauI GCSGC 3 cut(s) 152, 382, 385
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 2 cut(s) 509, 546
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 3 cut(s) 99, 282, 310
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 404
TspRI CASTG 2 cut(s) 509, 546
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 53, 635
XapI RAATTY 3 cut(s) 322, 590, 646
XspI CTAG 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 16
Zsp2I ATGCAT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.