Rh1DG258800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000506
Physical Location & Seq
Forward (+)
47451176 .. 47461909
10734 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG258800.1

Sequence Viewer

Length: 720 bp
ATGGGGGATTTGTACGCTTTGGATTTCGACGGAGTTCTGTGTGATAGCTGCGGAGAGAGCTATGCCACTGCTGCCAAGGTTGCTAAAGTGATATGGCCAACGCTATTCAACGATGTGGATTCAAGTTTAGAGGATTGGGTTGTTGATCAAATCCGCATCGTGCGAGCTGTGCTGCAAAACCGGTATGACAATCTTCTACTTGTGAGGTTACTTTTGGAAATGAGGCTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAAGGGATAGTGGAGAATTGGTCAGAGTTGAAGAATCTGATTTTGAAGGAATGGGGTGAGGATAAGGATGCTCTTGTAAAATTATATTTCCAGGTCAGGGATGAGTGGAAGGTTCAGGACTTGAAAACTTGGATTGGTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACCTCAACCATTTACATTGTCACTGGGAAACAGAGCCCATTTGCTGAGGTAATATTACAAGAATTTGCAAAAGATACAATACCGCCTGAAAGAATATTTGGTGTTGCTAGTTGCAGCCACAAGATAGAAGTACTGAAGCAGCTTCAAGAGAAAGCAGAACATCAAGGGCTGAAGCTGCAGCGGTTAGGGGTACAATACACAGAAAGAGAGAGACGAAGCTGCTACAATTCCCAGGATTCAGATTCTTCAGCTTTCCGACTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.19

Weight (kDa)

5.27

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 154, 536, 634
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 1 cut(s) 515
AcuI CTGAAG 4 cut(s) 608, 644, 684, 698
AfaI GTAC 3 cut(s) 14, 585, 645
AfiI CCNNNNNNNGG 1 cut(s) 367
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 6 cut(s) 109, 123, 301, 316, 394, 599
AjnI CCWGG 3 cut(s) 360, 424, 684
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 48, 60, 167, 595, 628, 672, 704
AluI AGCT 7 cut(s) 48, 60, 167, 595, 628, 672, 704
Alw26I GTCTC 1 cut(s) 658
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 8 cut(s) 48, 71, 172, 567, 592, 628, 631, 672
ApoI RAATTY 1 cut(s) 515
AsiGI ACCGGT 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 338
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 2 cut(s) 264, 491
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 8 cut(s) 35, 58, 159, 579, 604, 615, 643, 659
BciT130I CCWGG 3 cut(s) 362, 426, 686
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 658
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 629
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 8 cut(s) 49, 72, 173, 568, 593, 629, 632, 673
BlsI GCNGC 8 cut(s) 50, 73, 174, 569, 594, 630, 633, 674
BmcAI AGTACT 1 cut(s) 585
Bme1390I CCNGG 3 cut(s) 362, 426, 686
BmrFI CCNGG 3 cut(s) 362, 426, 686
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 165, 328, 427
BmuI ACTGGG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 75, 684
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 481
BseBI CCWGG 3 cut(s) 362, 426, 686
BseDI CCNNGG 2 cut(s) 75, 684
BseGI GGATG 2 cut(s) 343, 376
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 481
BseXI GCAGC 8 cut(s) 35, 58, 159, 579, 604, 615, 643, 659
BshFI GGCC 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 367
BsmAI GTCTC 1 cut(s) 658
BsmBI CGTCTC 1 cut(s) 658
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 264, 491
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 4 cut(s) 51, 154, 536, 634
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 633
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 1 cut(s) 481
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 75, 684
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 3 cut(s) 362, 426, 686
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 343, 376
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 658
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 5 cut(s) 57, 71, 80, 169, 628
BstNI CCWGG 3 cut(s) 362, 426, 686
BstSCI CCNGG 3 cut(s) 360, 424, 684
BstSFI CTRYAG 1 cut(s) 629
BstV1I GCAGC 8 cut(s) 35, 58, 159, 579, 604, 615, 643, 659
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 343, 376
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 474
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 3 cut(s) 13, 584, 644
CspAI ACCGGT 1 cut(s) 180
CviQI GTAC 3 cut(s) 13, 584, 644
DdeI CTNAG 1 cut(s) 498
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 2 cut(s) 264, 491
Eco57I CTGAAG 4 cut(s) 608, 644, 684, 698
EcoRII CCWGG 3 cut(s) 360, 424, 684
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 2 cut(s) 264, 491
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 658
FaiI YATR 5 cut(s) 63, 94, 186, 236, 355
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 8 cut(s) 49, 72, 173, 568, 593, 629, 632, 673
FokI GGATG 2 cut(s) 350, 383
FriOI GRGCYC 2 cut(s) 264, 491
Fsp4HI GCNGC 8 cut(s) 49, 72, 173, 568, 593, 629, 632, 673
FspBI CTAG 1 cut(s) 561
GluI GCNGC 8 cut(s) 49, 72, 173, 568, 593, 629, 632, 673
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 181
HinfI GANTC 4 cut(s) 119, 304, 689, 695
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 4 cut(s) 295, 309, 694, 710
Hpy188III TCNNGA 2 cut(s) 386, 599
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 240, 251, 266, 310, 373
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 175, 254, 410, 521, 567, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 71, 80, 169, 628
HpyF3I CTNAG 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
Lsp1109I GCAGC 8 cut(s) 35, 58, 159, 579, 604, 615, 643, 659
LweI GCATC 3 cut(s) 165, 328, 427
MaeI CTAG 1 cut(s) 561
MaeIII GTNAC 2 cut(s) 207, 472
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 3 cut(s) 185, 313, 690
MhlI GDGCHC 2 cut(s) 264, 491
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 4 cut(s) 286, 350, 515, 679
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 6 cut(s) 124, 198, 216, 322, 466, 493
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 634
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 3 cut(s) 362, 426, 686
MvaI CCWGG 3 cut(s) 362, 426, 686
MwoI GCNNNNNNNGC 5 cut(s) 57, 71, 80, 169, 628
NdeII GATC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 472
PfeI GAWTC 4 cut(s) 119, 304, 689, 695
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 8 cut(s) 50, 73, 174, 569, 594, 630, 633, 674
Psp6I CCWGG 3 cut(s) 360, 424, 684
PspGI CCWGG 3 cut(s) 360, 424, 684
PstI CTGCAG 1 cut(s) 633
RsaI GTAC 3 cut(s) 14, 585, 645
RsaNI GTAC 3 cut(s) 13, 584, 644
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 8 cut(s) 49, 72, 173, 568, 593, 629, 632, 673
Sau3AI GATC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 585
ScrFI CCNGG 3 cut(s) 362, 426, 686
SduI GDGCHC 2 cut(s) 264, 491
SfaNI GCATC 3 cut(s) 165, 328, 427
SfcI CTRYAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 286, 350, 515, 679
SsiI CCGC 4 cut(s) 51, 154, 536, 634
SspI AATATT 2 cut(s) 507, 549
SspMI CTAG 1 cut(s) 561
StyD4I CCNGG 3 cut(s) 360, 424, 684
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 27
TasI AATT 4 cut(s) 286, 350, 515, 679
TatI WGTACW 1 cut(s) 583
TfiI GAWTC 4 cut(s) 119, 304, 689, 695
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 73, 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 8 cut(s) 48, 71, 172, 567, 592, 628, 631, 672
Tsp45I GTSAC 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 73, 481
XapI RAATTY 1 cut(s) 515
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.