MD09G1245400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000506
Physical Location & Seq
Reverse (-)
31307439 .. 31308171
733 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1245400.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGGGGATTTATACGCTCTGGATTTTGATGGAGTTTTGTGTGATAGCTGCGGAGAGAGCTCCCAATCTGCTGTGAAGGCTGCTAAAGTGAGATGGCCAACTCTATTCAACGGCGTGGATTCAGCTTTGGAGGATTGGGTTCTTGAGCAGATGTACATAGTGAGACCTGTGGTGGAAACAGGGTATGAGAACCTGCTACTAGTGAGGTTGCTGCTGGAAATGAGGATACCTTCTATAAGGAAGTCTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.32

Weight (kDa)

4.58

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AciI CCGC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 1 cut(s) 155
AgsI TTSAA 1 cut(s) 109
AhlI ACTAGT 1 cut(s) 199
AluBI AGCT 3 cut(s) 48, 60, 125
AluI AGCT 3 cut(s) 48, 60, 125
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 157
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 48, 80, 211
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 35, 67, 198
BccI CCATC 2 cut(s) 23, 87
BceAI ACGGC 1 cut(s) 127
BciVI GTATCC 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 157
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 1 cut(s) 200
BfuAI ACCTGC 1 cut(s) 201
BfuI GTATCC 1 cut(s) 219
BisI GCNGC 3 cut(s) 49, 81, 212
BlsI GCNGC 3 cut(s) 50, 82, 213
BpuEI CTTGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 157
BseXI GCAGC 3 cut(s) 35, 67, 198
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 62
Bsp1407I TGTACA 1 cut(s) 153
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 157
BstMWI GCNNNNNNNGC 2 cut(s) 57, 77
BstV1I GCAGC 3 cut(s) 35, 67, 198
BsuI GTATCC 1 cut(s) 219
BsuRI GGCC 1 cut(s) 97
BveI ACCTGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 154
CviJI RGCY 5 cut(s) 48, 60, 80, 97, 125
CviKI_1 RGCY 5 cut(s) 48, 60, 80, 97, 125
CviQI GTAC 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 157
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 62
FaiI YATR 4 cut(s) 13, 158, 186, 236
Fnu4HI GCNGC 3 cut(s) 49, 81, 212
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 49, 81, 212
FspBI CTAG 1 cut(s) 200
GluI GCNGC 3 cut(s) 49, 81, 212
HaeIII GGCC 1 cut(s) 97
HinfI GANTC 1 cut(s) 119
Hpy188III TCNNGA 2 cut(s) 20, 143
HpyAV CCTTC 2 cut(s) 70, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 77
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 5 cut(s) 5, 165, 180, 200, 206
Lsp1109I GCAGC 3 cut(s) 35, 67, 198
MaeI CTAG 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 97
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 3 cut(s) 124, 198, 216
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 57, 77
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 3 cut(s) 50, 82, 213
Psp124BI GAGCTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 62
SatI GCNGC 3 cut(s) 49, 81, 212
SduI GDGCHC 1 cut(s) 62
SetI ASST 7 cut(s) 50, 62, 127, 169, 195, 209, 232
SgeI CNNG 8 cut(s) 32, 127, 155, 179, 192, 205, 212, 227
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 199
SsiI CCGC 1 cut(s) 51
SspMI CTAG 1 cut(s) 200
SstI GAGCTC 1 cut(s) 62
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 119
TseI GCWGC 3 cut(s) 48, 80, 211
TspGWI ACGGA 1 cut(s) 237
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.