MD01G1065200.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000506
Physical Location & Seq
Forward (+)
16892790 .. 16894981
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1065200.v1.1.491

Sequence Viewer

Length: 807 bp
ATGGGGGATTTATACGCTCTGGATTTTGATGGAGTTTTGTGTGATAGCTGCGGAGAGAGCTCCCAATCTGCTGTGAAGGCTGCTAAAGTGAGATGGCCAACTCTATTCAACGGCGTGGATTCAGCTTTGGAGGATTGGGTTCTTGAGCAGATGTACATAGTGAGACCTGTGGTGGAAACAGGGTATGAGAACCTGCTACTAGTGAGGTTGCTGCTGGAAATGAGGATACCTTCTATAAGGAAGTCCTCCGTAGCGGACGGGCTCACGGTGGATGGGATACTGGACAAGTGGTCGGAACTGAAGCCGGTGATCATGGCAGAATGGGGTGAAGAAAGGGATGCGCTTATTCATCTTTTCGGGAAGGTCAGGGATGAATGGATGGACGAGGACTTGAAAACTTGGATTGGTGCAAATAGATTATATCCAGGCGTTCCTGATGCTCTAAGATTTGCAAGCTCAACCATATACATAGTCACCACAAAACAGAGCCGATTCGCTGATGCTTTGCTGCGAGAACTTGCAGGAGTGACGATACCGCCTGAAAAGATATTTGGTCTTGGCAGTGGTCCAAAGGTAGAAGTATTGAAGCAAATTCAAAAGAAACCAGAACATCAGGGACTGAAACTGCACTTTGTCGAAGATCGTTTGGCAACCCTAAAGAATGTCATCAAAGAACCTGAATTGGATGGTTGGAATTTGTATCTAGGGAATTGGGGGTACAATACGCAGAAAGAGAGGGAGGAAGCAGCTACAATTCCCAGGATTCAGATCGTCGAGCTTTCTGAATTCAGTAAGAAGTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.35

Weight (kDa)

5.23

Isoelectric Point (pI)

27.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AciI CCGC 3 cut(s) 51, 254, 536
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 3 cut(s) 591, 694, 785
AcuI CTGAAG 1 cut(s) 320
AfaI GTAC 2 cut(s) 155, 719
AgsI TTSAA 5 cut(s) 109, 394, 586, 596, 802
AhdI GACNNNNNGTC 1 cut(s) 289
AhlI ACTAGT 1 cut(s) 199
AjnI CCWGG 2 cut(s) 424, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 6 cut(s) 48, 60, 125, 456, 749, 778
AluI AGCT 6 cut(s) 48, 60, 125, 456, 749, 778
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 157
AlwNI CAGNNNCTG 1 cut(s) 619
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 5 cut(s) 48, 80, 211, 508, 746
ApoI RAATTY 3 cut(s) 591, 694, 785
AspLEI GCGC 1 cut(s) 343
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 3 cut(s) 319, 338, 466
AvaII GGWCC 1 cut(s) 566
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 2 cut(s) 62, 264
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 5 cut(s) 35, 67, 198, 495, 758
BccI CCATC 5 cut(s) 23, 87, 266, 373, 680
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 2 cut(s) 426, 760
BciVI GTATCC 2 cut(s) 219, 270
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 157
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 2 cut(s) 200, 704
BfuAI ACCTGC 1 cut(s) 201
BfuI GTATCC 2 cut(s) 219, 270
BisI GCNGC 5 cut(s) 49, 81, 212, 509, 747
BlsI GCNGC 5 cut(s) 50, 82, 213, 510, 748
Bme1390I CCNGG 2 cut(s) 426, 760
Bme18I GGWCC 1 cut(s) 566
BmeRI GACNNNNNGTC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 566
BmrFI CCNGG 2 cut(s) 426, 760
BmsI GCATC 3 cut(s) 328, 427, 490
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 767
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 758
Bse118I RCCGGY 1 cut(s) 304
Bse1I ACTGG 1 cut(s) 285
Bse8I GATNNNNATC 1 cut(s) 767
BseBI CCWGG 2 cut(s) 426, 760
BseDI CCNNGG 1 cut(s) 758
BseGI GGATG 5 cut(s) 277, 343, 376, 384, 691
BseJI GATNNNNATC 1 cut(s) 767
BseNI ACTGG 1 cut(s) 285
BseXI GCAGC 5 cut(s) 35, 67, 198, 495, 758
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 305
BslFI GGGAC 1 cut(s) 630
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 630
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 62, 264
Bsp1407I TGTACA 1 cut(s) 153
Bsp143I GATC 3 cut(s) 309, 640, 768
BspACI CCGC 3 cut(s) 51, 254, 536
BspANI GGCC 1 cut(s) 97
BspMI ACCTGC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 304
BsrGI TGTACA 1 cut(s) 153
BsrI ACTGG 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 304
BssECI CCNNGG 1 cut(s) 758
BssMI GATC 3 cut(s) 309, 640, 768
Bst2UI CCWGG 2 cut(s) 426, 760
Bst4CI ACNGT 1 cut(s) 268
BstAUI TGTACA 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 5 cut(s) 277, 343, 376, 384, 691
BstHHI GCGC 1 cut(s) 343
BstKTI GATC 3 cut(s) 312, 643, 771
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 309, 640, 768
BstMWI GCNNNNNNNGC 2 cut(s) 57, 77
BstNI CCWGG 2 cut(s) 426, 760
BstSCI CCNGG 2 cut(s) 424, 758
BstV1I GCAGC 5 cut(s) 35, 67, 198, 495, 758
BsuI GTATCC 2 cut(s) 219, 270
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 5 cut(s) 277, 343, 376, 384, 691
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 1 cut(s) 568
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 619
CfoI GCGC 1 cut(s) 343
Cfr10I RCCGGY 1 cut(s) 304
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 2 cut(s) 154, 718
CviAII CATG 1 cut(s) 313
CviQI GTAC 2 cut(s) 154, 718
DdeI CTNAG 1 cut(s) 443
DpnI GATC 3 cut(s) 311, 642, 770
DpnII GATC 3 cut(s) 309, 640, 768
DriI GACNNNNNGTC 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 289
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 62, 264
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 320
EcoICRI GAGCTC 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 785
EcoRII CCWGG 2 cut(s) 424, 758
EcoT38I GRGCYC 2 cut(s) 62, 264
FaeI CATG 1 cut(s) 316
FaiI YATR 9 cut(s) 13, 158, 186, 236, 314, 421, 464, 466, 470
FaqI GGGAC 1 cut(s) 630
FatI CATG 1 cut(s) 312
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 5 cut(s) 49, 81, 212, 509, 747
FokI GGATG 5 cut(s) 284, 350, 383, 391, 698
FriOI GRGCYC 2 cut(s) 62, 264
Fsp4HI GCNGC 5 cut(s) 49, 81, 212, 509, 747
FspBI CTAG 2 cut(s) 200, 704
GlaI GCGC 1 cut(s) 342
GluI GCNGC 5 cut(s) 49, 81, 212, 509, 747
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 305
HhaI GCGC 1 cut(s) 343
Hin1II CATG 1 cut(s) 316
Hin6I GCGC 1 cut(s) 341
HinP1I GCGC 1 cut(s) 341
HinfI GANTC 3 cut(s) 119, 492, 763
HpaII CCGG 1 cut(s) 305
HphI GGTGA 3 cut(s) 319, 338, 466
Hpy188I TCNGA 3 cut(s) 295, 768, 784
Hpy188III TCNNGA 4 cut(s) 20, 143, 358, 434
Hpy99I CGWCG 1 cut(s) 776
HpyAV CCTTC 3 cut(s) 70, 240, 355
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 410, 452, 521, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 77
HpyF3I CTNAG 1 cut(s) 443
Hsp92II CATG 1 cut(s) 316
HspAI GCGC 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 309, 640, 768
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 5 cut(s) 35, 67, 198, 495, 758
LweI GCATC 3 cut(s) 328, 427, 490
MaeI CTAG 2 cut(s) 200, 704
MaeIII GTNAC 2 cut(s) 472, 526
MalI GATC 3 cut(s) 311, 642, 770
MboI GATC 3 cut(s) 309, 640, 768
MboII GAAGA 2 cut(s) 341, 650
MhlI GDGCHC 2 cut(s) 62, 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 6 cut(s) 591, 680, 694, 709, 753, 785
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 273, 671
MnlI CCTC 7 cut(s) 124, 198, 216, 256, 379, 729, 733
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 426, 760
MvaI CCWGG 2 cut(s) 426, 760
MwoI GCNNNNNNNGC 2 cut(s) 57, 77
NdeII GATC 3 cut(s) 309, 640, 768
NlaIII CATG 1 cut(s) 316
NmuCI GTSAC 2 cut(s) 472, 526
PfeI GAWTC 3 cut(s) 119, 492, 763
PkrI GCNGC 5 cut(s) 50, 82, 213, 510, 748
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 424, 758
PspGI CCWGG 2 cut(s) 424, 758
PspPI GGNCC 1 cut(s) 566
PstNI CAGNNNCTG 1 cut(s) 619
RsaI GTAC 2 cut(s) 155, 719
RsaNI GTAC 2 cut(s) 154, 718
SacI GAGCTC 1 cut(s) 62
SatI GCNGC 5 cut(s) 49, 81, 212, 509, 747
Sau3AI GATC 3 cut(s) 309, 640, 768
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 426, 760
SduI GDGCHC 2 cut(s) 62, 264
SfaNI GCATC 3 cut(s) 328, 427, 490
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 143
SmoI CTYRAG 1 cut(s) 143
SpeI ACTAGT 1 cut(s) 199
Sse9I AATT 6 cut(s) 591, 680, 694, 709, 753, 785
SsiI CCGC 3 cut(s) 51, 254, 536
SspMI CTAG 2 cut(s) 200, 704
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 424, 758
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 636, 774
TasI AATT 6 cut(s) 591, 680, 694, 709, 753, 785
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 3 cut(s) 119, 492, 763
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 472, 526
TseI GCWGC 5 cut(s) 48, 80, 211, 508, 746
Tsp45I GTSAC 2 cut(s) 472, 526
TspDTI ATGAA 2 cut(s) 338, 387
TspGWI ACGGA 1 cut(s) 238
TspRI CASTG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 3 cut(s) 591, 694, 785
XspI CTAG 2 cut(s) 200, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.