FvH4_3g44250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000506
Physical Location & Seq
Reverse (-)
36890504 .. 36892991
2488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44250.t5

Sequence Viewer

Length: 852 bp
ATGTTAACTGAAAGCGGAGACTCAGAGCAGGAAGCAGAAATGGGGGATTTGTACGCTTTGGATTTCGACGGTGTTCTGTGTGATAGCTGCGGTGAGAGCTATGCCTCTGCTGCCAGGGCTGCTAAAGTGAGATGGCCAACGTTGTTCAACGATGTGGATTCAAGTTTAGAGGATTGGATTATTGATCAAATTCGCATAGTGAGACCTGTAATGCAATCCAGGCATGAGACTGTTCTATTTGTGAGGTTACTTTTGGAGATGAGGCTTCCTTCTTTAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAGGGGATAGTGGAGAATTGGTCAGAGTTGAAGATTCTGCTTCGGAATGAATGGGGTGAGGATAAGGAGTCTCTTGAGAATTTATTTAGAAAGGTCAGGGATGAGTGGAAGGGCCAGGACTTGGGGACTTGGATTGGTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACCTCAACCATCTACATCGTCACCGGGAAACAGAGCCCATTTGCTGAGGTGATATTGCGAGAACTTGCAGGAGTTACATTACCACCTGAAAGAATATTTAGTGTTGCATCCGGTTCCAAACACAAGATAGAAGTACTAAAGCAGCTTCAGAAGAAACCAGAACATCAAGGACTGAAGCTGCACTTTGTGGAGGATAGACTGGCAACCCTGAAGAAAGTTATTGAAGAACCCGAATTGGTTGGTTGGAATTTGTATCTAGGCGACTGGGGGTACAATACACCGAAAGAGAGAGACGAAGTTGCTACAATTCCCAGGATTCAGATTCTTCAGCTTTCTGACTTCAGTAACAAGTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

284

Amino Acids

32.11

Weight (kDa)

5.18

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 430
AciI CCGC 2 cut(s) 15, 90
AclI AACGTT 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 134
AcsI RAATTY 3 cut(s) 189, 388, 739
AcuI CTGAAG 5 cut(s) 623, 686, 722, 803, 817
AdeI CACNNNGTG 1 cut(s) 679
AfaI GTAC 3 cut(s) 53, 627, 764
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 5 cut(s) 148, 162, 340, 716, 847
AjnI CCWGG 5 cut(s) 113, 218, 423, 463, 803
AluBI AGCT 5 cut(s) 87, 99, 637, 670, 823
AluI AGCT 5 cut(s) 87, 99, 637, 670, 823
Alw26I GTCTC 5 cut(s) 12, 196, 221, 384, 777
AoxI GGCC 2 cut(s) 134, 421
ApeKI GCWGC 5 cut(s) 87, 110, 119, 634, 670
ApoI RAATTY 3 cut(s) 189, 388, 739
AspS9I GGNCC 1 cut(s) 421
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 4 cut(s) 104, 377, 505, 553
BalI TGGCCA 1 cut(s) 136
BanII GRGCYC 2 cut(s) 303, 530
BbvCI CCTCAGC 1 cut(s) 537
BbvI GCAGC 5 cut(s) 74, 97, 106, 646, 657
BccI CCATC 2 cut(s) 126, 509
BciT130I CCWGG 5 cut(s) 115, 220, 425, 465, 805
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 1 cut(s) 184
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 5 cut(s) 12, 196, 221, 384, 777
BfaI CTAG 1 cut(s) 749
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 5 cut(s) 88, 111, 120, 635, 671
BlsI GCNGC 5 cut(s) 89, 112, 121, 636, 672
BmcAI AGTACT 1 cut(s) 627
Bme1390I CCNGG 6 cut(s) 115, 220, 425, 465, 517, 805
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 607
BmrFI CCNGG 6 cut(s) 115, 220, 425, 465, 517, 805
BmrI ACTGGG 1 cut(s) 766
BmsI GCATC 2 cut(s) 466, 608
BmuI ACTGGG 1 cut(s) 766
Bpu10I CCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 114, 803
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 2 cut(s) 314, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 2 cut(s) 696, 761
BseBI CCWGG 5 cut(s) 115, 220, 425, 465, 805
BseDI CCNNGG 2 cut(s) 114, 803
BseGI GGATG 2 cut(s) 415, 599
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 36, 528
BseNI ACTGG 2 cut(s) 696, 761
BseXI GCAGC 5 cut(s) 74, 97, 106, 646, 657
BsgI GTGCAG 1 cut(s) 656
BshFI GGCC 2 cut(s) 136, 423
BsiSI CCGG 2 cut(s) 516, 603
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 5 cut(s) 12, 196, 221, 384, 777
BsmBI CGTCTC 1 cut(s) 777
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 2 cut(s) 136, 423
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 2 cut(s) 303, 530
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 15, 90
BspANI GGCC 2 cut(s) 136, 423
BspCNI CTCAG 2 cut(s) 35, 529
BspLI GGNNCC 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 196
BsrI ACTGG 2 cut(s) 696, 761
BssECI CCNNGG 2 cut(s) 114, 803
BssMI GATC 1 cut(s) 184
Bst2UI CCWGG 5 cut(s) 115, 220, 425, 465, 805
Bst4CI ACNGT 3 cut(s) 71, 232, 307
BstDEI CTNAG 2 cut(s) 22, 537
BstF5I GGATG 2 cut(s) 415, 599
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 5 cut(s) 12, 196, 221, 384, 777
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 5 cut(s) 96, 110, 116, 119, 220
BstNI CCWGG 5 cut(s) 115, 220, 425, 465, 805
BstSCI CCNGG 6 cut(s) 113, 218, 423, 463, 515, 803
BstV1I GCAGC 5 cut(s) 74, 97, 106, 646, 657
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 2 cut(s) 136, 423
BtsCI GGATG 2 cut(s) 415, 599
Cfr13I GGNCC 1 cut(s) 421
Csp6I GTAC 3 cut(s) 52, 626, 763
CviAII CATG 1 cut(s) 224
CviQI GTAC 3 cut(s) 52, 626, 763
DdeI CTNAG 2 cut(s) 22, 537
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DraIII CACNNNGTG 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 134
Eco24I GRGCYC 2 cut(s) 303, 530
Eco31I GGTCTC 1 cut(s) 196
Eco57I CTGAAG 5 cut(s) 623, 686, 722, 803, 817
EcoRII CCWGG 5 cut(s) 113, 218, 423, 463, 803
EcoT38I GRGCYC 2 cut(s) 303, 530
Esp3I CGTCTC 1 cut(s) 777
FaeI CATG 1 cut(s) 227
FaiI YATR 3 cut(s) 102, 197, 225
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FaqI GGGAC 1 cut(s) 448
FatI CATG 1 cut(s) 223
FbaI TGATCA 1 cut(s) 184
Fnu4HI GCNGC 5 cut(s) 88, 111, 120, 635, 671
FokI GGATG 2 cut(s) 422, 586
FriOI GRGCYC 2 cut(s) 303, 530
Fsp4HI GCNGC 5 cut(s) 88, 111, 120, 635, 671
FspBI CTAG 1 cut(s) 749
GluI GCNGC 5 cut(s) 88, 111, 120, 635, 671
HaeIII GGCC 2 cut(s) 136, 423
HapII CCGG 2 cut(s) 516, 603
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 6 cut(s) 20, 158, 343, 377, 808, 814
HpaI GTTAAC 1 cut(s) 6
HpaII CCGG 2 cut(s) 516, 603
HphI GGTGA 4 cut(s) 104, 377, 505, 553
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 6 cut(s) 25, 334, 354, 642, 813, 829
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 279, 290, 412
HpyCH4III ACNGT 3 cut(s) 71, 232, 307
HpyCH4IV ACGT 1 cut(s) 140
HpyCH4V TGCA 6 cut(s) 214, 293, 449, 560, 599, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 96, 110, 116, 119, 220
HpyF3I CTNAG 2 cut(s) 22, 537
HpySE526I ACGT 1 cut(s) 140
Hsp92II CATG 1 cut(s) 227
Ksp22I TGATCA 1 cut(s) 184
KspAI GTTAAC 1 cut(s) 6
Kzo9I GATC 1 cut(s) 184
Lsp1109I GCAGC 5 cut(s) 74, 97, 106, 646, 657
LweI GCATC 2 cut(s) 466, 608
MaeI CTAG 1 cut(s) 749
MaeII ACGT 1 cut(s) 140
MaeIII GTNAC 4 cut(s) 246, 511, 565, 836
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 5 cut(s) 352, 655, 715, 728, 809
MhlI GDGCHC 2 cut(s) 303, 530
MlsI TGGCCA 1 cut(s) 136
MluCI AATT 6 cut(s) 189, 325, 388, 725, 739, 798
MluNI TGGCCA 1 cut(s) 136
MlyI GAGTC 2 cut(s) 14, 386
MmeI TCCRAC 1 cut(s) 716
MnlI CCTC 9 cut(s) 115, 163, 237, 255, 304, 361, 505, 532, 676
Mox20I TGGCCA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 136
MseI TTAA 3 cut(s) 5, 275, 483
Msp20I TGGCCA 1 cut(s) 136
MspI CCGG 2 cut(s) 516, 603
MspR9I CCNGG 6 cut(s) 115, 220, 425, 465, 517, 805
MvaI CCWGG 5 cut(s) 115, 220, 425, 465, 805
MwoI GCNNNNNNNGC 5 cut(s) 96, 110, 116, 119, 220
NciI CCSGG 1 cut(s) 517
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 607
NmuCI GTSAC 1 cut(s) 511
PfeI GAWTC 4 cut(s) 158, 343, 808, 814
PflMI CCANNNNNTGG 1 cut(s) 430
PkrI GCNGC 5 cut(s) 89, 112, 121, 636, 672
PleI GAGTC 2 cut(s) 14, 385
PpsI GAGTC 2 cut(s) 14, 385
Psp1406I AACGTT 1 cut(s) 140
Psp6I CCWGG 5 cut(s) 113, 218, 423, 463, 803
PspGI CCWGG 5 cut(s) 113, 218, 423, 463, 803
PspN4I GGNNCC 1 cut(s) 607
PspPI GGNCC 1 cut(s) 421
RsaI GTAC 3 cut(s) 53, 627, 764
RsaNI GTAC 3 cut(s) 52, 626, 763
SaqAI TTAA 3 cut(s) 5, 275, 483
SatI GCNGC 5 cut(s) 88, 111, 120, 635, 671
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 421
ScaI AGTACT 1 cut(s) 627
SchI GAGTC 2 cut(s) 14, 386
ScrFI CCNGG 6 cut(s) 115, 220, 425, 465, 517, 805
SduI GDGCHC 2 cut(s) 303, 530
SfaNI GCATC 2 cut(s) 466, 608
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 6 cut(s) 189, 325, 388, 725, 739, 798
SsiI CCGC 2 cut(s) 15, 90
SspI AATATT 1 cut(s) 588
SspMI CTAG 1 cut(s) 749
StyD4I CCNGG 6 cut(s) 113, 218, 423, 463, 515, 803
TaaI ACNGT 3 cut(s) 71, 232, 307
TaiI ACGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 66
TasI AATT 6 cut(s) 189, 325, 388, 725, 739, 798
TatI WGTACW 1 cut(s) 625
TfiI GAWTC 4 cut(s) 158, 343, 808, 814
Tru1I TTAA 3 cut(s) 5, 275, 483
Tru9I TTAA 3 cut(s) 5, 275, 483
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 5 cut(s) 87, 110, 119, 634, 670
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 1 cut(s) 372
Van91I CCANNNNNTGG 1 cut(s) 430
XapI RAATTY 3 cut(s) 189, 388, 739
XspI CTAG 1 cut(s) 749
ZrmI AGTACT 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.