pycom01g09450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0000506
Physical Location & Seq
Forward (+)
10344583 .. 10346709
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g09450.2

Sequence Viewer

Length: 1044 bp
ATGTTGTTTGCAGTGGGTACTCAAAGACTGGCGGCCACGCTTCAATCTAGTTGGGCCTATAGTGGCAGGCCTAACCGCTCAGCCCAATCAAAATCCATCCAAAAGATGCGGAGAAGAATAATCGCCCGCTACCTAAAGTCCTCCGTCGATAAAAGAACAAAAGAAACCACTCAGACCAGAGACTCTGAGAGGAGAAGGAGAGAGAAAGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGGATTTATACGCTCTGGATTTTGATGGAGTTTTGTGTGATAGCTGCGGAGAGAGCTCCCAATCTGCTGTGAAGGCTGCTAAAGTGAGATGGCCAACTCTATTCAACGGCGTGGATTCAGCTTTGGAGGATTGGGTTCTTGAGCAGATGTACATAGTGAGGCCTGTGGTGGAAACTGGGTATGAGAACCTGCTACTAGTGAGGTTGCTGCTGGAAATGAGGATACCTTCTATAAGGAAGTCCTCCGTAGCGGAAGGGCTCACGGTGGATGGGATACTGGAGAAGTGGTCGGAACTGAAGCCGGTGATTATGGCAGAATGGGGCGAAGAAAGGGATGCGCTTATTCATCTTTTCGGGAAGGTCAGGGATGAATGGATGGACGAGGACTTGAAAACTTGGATTGGTGCAAATAGATTATATCCAGGCGTTCCTGATGCTCTAAGATTTGCAAGCTCAACCATATACATAGTCACCACAAAACAGAGCCGATTCGCAGATGCTTTGCTGCGAGAACTTGCAGGAGTTACGATACCGCCTGAAAAGATATTTGGTCTTGGCAGTGGTCCAAAGGTAGAAGTACTGAAGCAAATTCAAAAGAAACCAGAACATCAGGGGCTGAAACTGCACTTTGTCGAAGATCGTTTGGCAACCCTAAAGAATGTCATCAAAGAACCTGAATTGGATGGTTGGAACTTGTATCTAGGGAATTGGGGGTACAATACACAGAAAGAGAGGGAGGAAGCAGCTACAATTCCCAGAATTCAGATTGTCGAGCTTTCTGAATTCAGTAAGAAATTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

39.89

Weight (kDa)

8.97

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 78
AciI CCGC 7 cut(s) 32, 76, 109, 127, 288, 491, 773
AcoI YGGCCR 2 cut(s) 33, 332
AcsI RAATTY 3 cut(s) 828, 999, 1022
AcuI CTGAAG 2 cut(s) 557, 842
AfaI GTAC 4 cut(s) 19, 392, 819, 956
AgsI TTSAA 5 cut(s) 44, 346, 631, 833, 1039
AhlI ACTAGT 1 cut(s) 436
AjnI CCWGG 1 cut(s) 661
AjuI GAANNNNNNNTTGG 2 cut(s) 771, 803
AluBI AGCT 6 cut(s) 285, 297, 362, 693, 986, 1015
AluI AGCT 6 cut(s) 285, 297, 362, 693, 986, 1015
Alw21I GWGCWC 1 cut(s) 299
Alw26I GTCTC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 856
AoxI GGCC 5 cut(s) 33, 54, 68, 332, 401
ApeKI GCWGC 5 cut(s) 285, 317, 448, 745, 983
ApoI RAATTY 3 cut(s) 828, 999, 1022
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 2 cut(s) 54, 803
AsuHPI GGTGA 2 cut(s) 556, 703
AvaII GGWCC 1 cut(s) 803
BalI TGGCCA 1 cut(s) 334
BanII GRGCYC 2 cut(s) 299, 501
Bbv12I GWGCWC 1 cut(s) 299
BbvI GCAGC 5 cut(s) 272, 304, 435, 732, 995
BccI CCATC 7 cut(s) 104, 232, 260, 324, 503, 610, 917
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 663
BciVI GTATCC 2 cut(s) 456, 507
BcoDI GTCTC 1 cut(s) 174
BcuI ACTAGT 1 cut(s) 436
BfaI CTAG 3 cut(s) 48, 437, 941
BfmI CTRYAG 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 438
BfuI GTATCC 2 cut(s) 456, 507
BisI GCNGC 6 cut(s) 33, 286, 318, 449, 746, 984
BlpI GCTNAGC 1 cut(s) 79
BlsI GCNGC 6 cut(s) 34, 287, 319, 450, 747, 985
BmcAI AGTACT 1 cut(s) 819
Bme1390I CCNGG 1 cut(s) 663
Bme18I GGWCC 1 cut(s) 803
BmgT120I GGNCC 2 cut(s) 54, 803
BmrFI CCNGG 1 cut(s) 663
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 4 cut(s) 96, 565, 664, 727
BmuI ACTGGG 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 539
Bpu1102I GCTNAGC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 401
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bse118I RCCGGY 1 cut(s) 541
Bse1I ACTGG 3 cut(s) 33, 421, 522
BseBI CCWGG 1 cut(s) 663
BseGI GGATG 6 cut(s) 96, 514, 580, 613, 621, 928
BseMII CTCAG 3 cut(s) 93, 177, 185
BseNI ACTGG 3 cut(s) 33, 421, 522
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 5 cut(s) 272, 304, 435, 732, 995
BsgI GTGCAG 1 cut(s) 848
BshFI GGCC 5 cut(s) 35, 56, 70, 334, 403
BsiHKAI GWGCWC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 174
BsnI GGCC 5 cut(s) 35, 56, 70, 334, 403
Bsp1286I GDGCHC 2 cut(s) 299, 501
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 1 cut(s) 877
Bsp1720I GCTNAGC 1 cut(s) 79
BspACI CCGC 7 cut(s) 32, 76, 109, 127, 288, 491, 773
BspANI GGCC 5 cut(s) 35, 56, 70, 334, 403
BspCNI CTCAG 3 cut(s) 92, 178, 184
BspMI ACCTGC 1 cut(s) 438
BsrBI CCGCTC 1 cut(s) 78
BsrFI RCCGGY 1 cut(s) 541
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 3 cut(s) 33, 421, 522
BssAI RCCGGY 1 cut(s) 541
BssMI GATC 1 cut(s) 877
Bst2UI CCWGG 1 cut(s) 663
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 1 cut(s) 204
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 3 cut(s) 68, 127, 691
BstDEI CTNAG 4 cut(s) 79, 171, 186, 680
BstF5I GGATG 6 cut(s) 96, 514, 580, 613, 621, 928
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 1 cut(s) 880
BstMAI GTCTC 1 cut(s) 174
BstMBI GATC 1 cut(s) 877
BstMWI GCNNNNNNNGC 3 cut(s) 294, 314, 862
BstNI CCWGG 1 cut(s) 663
BstSCI CCNGG 1 cut(s) 661
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 5 cut(s) 272, 304, 435, 732, 995
BsuI GTATCC 2 cut(s) 456, 507
BsuRI GGCC 5 cut(s) 35, 56, 70, 334, 403
BtsCI GGATG 6 cut(s) 96, 514, 580, 613, 621, 928
BtsI GCAGTG 2 cut(s) 18, 805
BtsIMutI CAGTG 2 cut(s) 18, 805
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 3 cut(s) 68, 127, 691
CaiI CAGNNNCTG 1 cut(s) 856
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 1 cut(s) 541
Cfr13I GGNCC 2 cut(s) 54, 803
Csp6I GTAC 4 cut(s) 18, 391, 818, 955
CviQI GTAC 4 cut(s) 18, 391, 818, 955
DdeI CTNAG 4 cut(s) 79, 171, 186, 680
DpnI GATC 1 cut(s) 879
DpnII GATC 1 cut(s) 877
EaeI YGGCCR 2 cut(s) 33, 332
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Ecl136II GAGCTC 1 cut(s) 297
Eco147I AGGCCT 2 cut(s) 70, 403
Eco24I GRGCYC 2 cut(s) 299, 501
Eco47I GGWCC 1 cut(s) 803
Eco53kI GAGCTC 1 cut(s) 297
Eco57I CTGAAG 2 cut(s) 557, 842
EcoICRI GAGCTC 1 cut(s) 297
EcoRI GAATTC 2 cut(s) 999, 1022
EcoRII CCWGG 1 cut(s) 661
EcoT38I GRGCYC 2 cut(s) 299, 501
FauI CCCGC 1 cut(s) 134
Fnu4HI GCNGC 6 cut(s) 33, 286, 318, 449, 746, 984
FokI GGATG 6 cut(s) 83, 521, 587, 620, 628, 935
FriOI GRGCYC 2 cut(s) 299, 501
Fsp4HI GCNGC 6 cut(s) 33, 286, 318, 449, 746, 984
FspBI CTAG 3 cut(s) 48, 437, 941
GlaI GCGC 1 cut(s) 579
GluI GCNGC 6 cut(s) 33, 286, 318, 449, 746, 984
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 5 cut(s) 35, 56, 70, 334, 403
HapII CCGG 1 cut(s) 542
HhaI GCGC 1 cut(s) 580
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 3 cut(s) 182, 356, 729
HpaII CCGG 1 cut(s) 542
HphI GGTGA 2 cut(s) 556, 703
Hpy188I TCNGA 5 cut(s) 174, 187, 532, 1005, 1021
Hpy188III TCNNGA 4 cut(s) 257, 380, 595, 671
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 5 cut(s) 189, 307, 477, 488, 592
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 5 cut(s) 11, 647, 689, 758, 865
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 314, 862
HpyF3I CTNAG 4 cut(s) 79, 171, 186, 680
HspAI GCGC 1 cut(s) 578
Kzo9I GATC 1 cut(s) 877
LmnI GCTCC 1 cut(s) 302
Lsp1109I GCAGC 5 cut(s) 272, 304, 435, 732, 995
LweI GCATC 4 cut(s) 96, 565, 664, 727
MaeI CTAG 3 cut(s) 48, 437, 941
MaeIII GTNAC 2 cut(s) 709, 763
MalI GATC 1 cut(s) 879
MbiI CCGCTC 1 cut(s) 78
MboI GATC 1 cut(s) 877
MboII GAAGA 4 cut(s) 126, 221, 578, 887
MhlI GDGCHC 2 cut(s) 299, 501
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 7 cut(s) 828, 917, 946, 990, 999, 1022, 1034
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 2 cut(s) 510, 908
Mox20I TGGCCA 1 cut(s) 334
MscI TGGCCA 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 334
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 1 cut(s) 663
MvaI CCWGG 1 cut(s) 663
MwoI GCNNNNNNNGC 3 cut(s) 294, 314, 862
NdeII GATC 1 cut(s) 877
NmuCI GTSAC 1 cut(s) 709
PceI AGGCCT 2 cut(s) 70, 403
PfeI GAWTC 2 cut(s) 356, 729
PkrI GCNGC 6 cut(s) 34, 287, 319, 450, 747, 985
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 661
PspGI CCWGG 1 cut(s) 661
PspPI GGNCC 2 cut(s) 54, 803
PstNI CAGNNNCTG 1 cut(s) 856
RsaI GTAC 4 cut(s) 19, 392, 819, 956
RsaNI GTAC 4 cut(s) 18, 391, 818, 955
SacI GAGCTC 1 cut(s) 299
SatI GCNGC 6 cut(s) 33, 286, 318, 449, 746, 984
Sau3AI GATC 1 cut(s) 877
Sau96I GGNCC 2 cut(s) 54, 803
ScaI AGTACT 1 cut(s) 819
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 663
SduI GDGCHC 2 cut(s) 299, 501
SfaNI GCATC 4 cut(s) 96, 565, 664, 727
SfcI CTRYAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 803
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SpeI ACTAGT 1 cut(s) 436
Sse9I AATT 7 cut(s) 828, 917, 946, 990, 999, 1022, 1034
SseBI AGGCCT 2 cut(s) 70, 403
SsiI CCGC 7 cut(s) 32, 76, 109, 127, 288, 491, 773
SspMI CTAG 3 cut(s) 48, 437, 941
SstI GAGCTC 1 cut(s) 299
StuI AGGCCT 2 cut(s) 70, 403
StyD4I CCNGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 3 cut(s) 147, 873, 1011
TasI AATT 7 cut(s) 828, 917, 946, 990, 999, 1022, 1034
TatI WGTACW 2 cut(s) 390, 817
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 356, 729
TscAI CASTG 2 cut(s) 18, 805
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 5 cut(s) 285, 317, 448, 745, 983
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 2 cut(s) 575, 624
TspGWI ACGGA 2 cut(s) 133, 475
TspRI CASTG 2 cut(s) 18, 805
VpaK11BI GGWCC 1 cut(s) 803
XapI RAATTY 3 cut(s) 828, 999, 1022
XspI CTAG 3 cut(s) 48, 437, 941
ZrmI AGTACT 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.