Prupe.2G172200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000506
Physical Location & Seq
Forward (+)
21892534 .. 21894691
2158 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G172200.1

Sequence Viewer

Length: 807 bp
ATGGGGGATTTATATGCTTTGGATTTTGATGGAGTTTTGTGTGATAGCTGTGGAGAGAGCTCTCTCTCTGCTGTGAAGGCTGCTAAAGTGAGATGGCCAAGTCTATTCAACGGTGTGGATTCAACTTTGGAGGATTGGGTTGTTGAGCAGATGCACATAGTGAGGCCTGTGGTGGAAACTGGATATGAGAATCTATTGCTTGTGAGGTTGCTGCTGGAGGCGAGAATCCCTTCTATACGAAAGTCATCGGTCGCGGAAGGGATTACAGTGGAGGGGATATTGGAGAAGTGGTCAGAGCTGAAGCCTGTGATTATGGAAGAGTGGGGTGAGGAGAGGGATGCTCTTATTAATCTTTTTGGGAAGGTCAGGGATGAGTGGATGGATGAAGGCCTAACAACTTGGATTGGTGCAAATAGATTATATCCAGGTGTTCCTGATGCTCTAAAATTTGCAAGCTCAACCATATACATTGTCACCACAAAACAGAGCCGATTTGCTGATGCTTTACTGCGAGAACTTGCAGGAGTTACAATACCGCCTGAAAGAATATTTGGTCTTGGAAGTGGTCCCAAGGTAGAAGTATTGAAGCAGCTTCAAAAGAAACCAGAACATCAGGGGCTGAAACTGCACTTTGTCGAAGATCGACTGGCAACCCTAAAAAATGTGATCAAAGAACCTGAATTGGATGGTTGGAATTTGTATCTAGGGGATTGGGGTTACAATACACAGAAGGAGAGGGAGGAGGCAGCTACAATTCCCAGGATTCGGATCCTTGAGCTTTCTGACTTCAGTAACAAGTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.25

Weight (kDa)

5.09

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 254
AciI CCGC 2 cut(s) 254, 536
AclWI GGATC 2 cut(s) 763, 776
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 2 cut(s) 446, 694
AcuI CTGAAG 2 cut(s) 320, 772
AdeI CACNNNGTG 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 765
AgsI TTSAA 5 cut(s) 109, 123, 586, 596, 802
AjnI CCWGG 2 cut(s) 424, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 48, 60, 298, 456, 592, 749, 778
AluI AGCT 7 cut(s) 48, 60, 298, 456, 592, 749, 778
Alw21I GWGCWC 1 cut(s) 62
AlwI GGATC 2 cut(s) 763, 776
AlwNI CAGNNNCTG 1 cut(s) 619
AoxI GGCC 3 cut(s) 95, 164, 388
ApeKI GCWGC 4 cut(s) 80, 211, 589, 746
ApoI RAATTY 2 cut(s) 446, 694
AseI ATTAAT 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 338, 466
AvaII GGWCC 1 cut(s) 566
BalI TGGCCA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 768
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 4 cut(s) 67, 198, 601, 758
BccI CCATC 4 cut(s) 23, 87, 373, 680
BciT130I CCWGG 2 cut(s) 426, 760
BclI TGATCA 1 cut(s) 666
BfaI CTAG 1 cut(s) 704
BisI GCNGC 4 cut(s) 81, 212, 590, 747
BlsI GCNGC 4 cut(s) 82, 213, 591, 748
Bme1390I CCNGG 2 cut(s) 426, 760
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 2 cut(s) 568, 770
BmrFI CCNGG 2 cut(s) 426, 760
BmsI GCATC 4 cut(s) 141, 328, 427, 490
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 794
BsaBI GATNNNNATC 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 570, 758
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 765
Bse1I ACTGG 2 cut(s) 184, 651
Bse8I GATNNNNATC 1 cut(s) 767
BseBI CCWGG 2 cut(s) 426, 760
BseDI CCNNGG 2 cut(s) 570, 758
BseGI GGATG 5 cut(s) 343, 376, 384, 388, 691
BseJI GATNNNNATC 1 cut(s) 767
BseLI CCNNNNNNNGG 1 cut(s) 765
BseNI ACTGG 2 cut(s) 184, 651
BseRI GAGGAG 2 cut(s) 344, 755
BseXI GCAGC 4 cut(s) 67, 198, 601, 758
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 252
BshFI GGCC 3 cut(s) 97, 166, 390
BsiEI CGRYCG 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 62
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 1 cut(s) 765
BsmFI GGGAC 1 cut(s) 552
BsnI GGCC 3 cut(s) 97, 166, 390
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 640, 666, 768
BspACI CCGC 2 cut(s) 254, 536
BspANI GGCC 3 cut(s) 97, 166, 390
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 2 cut(s) 568, 770
BspPI GGATC 2 cut(s) 763, 776
BsrI ACTGG 2 cut(s) 184, 651
BssECI CCNNGG 2 cut(s) 570, 758
BssMI GATC 3 cut(s) 640, 666, 768
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 2 cut(s) 426, 760
Bst4CI ACNGT 2 cut(s) 113, 268
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 454
BstF5I GGATG 5 cut(s) 343, 376, 384, 388, 691
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 3 cut(s) 643, 669, 771
BstMBI GATC 3 cut(s) 640, 666, 768
BstMCI CGRYCG 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 77, 625
BstNI CCWGG 2 cut(s) 426, 760
BstSCI CCNGG 2 cut(s) 424, 758
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 67, 198, 601, 758
BstX2I RGATCY 1 cut(s) 768
BstYI RGATCY 1 cut(s) 768
BsuRI GGCC 3 cut(s) 97, 166, 390
BtsCI GGATG 5 cut(s) 343, 376, 384, 388, 691
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 454
CaiI CAGNNNCTG 1 cut(s) 619
Cfr13I GGNCC 1 cut(s) 566
DpnI GATC 3 cut(s) 642, 668, 770
DpnII GATC 3 cut(s) 640, 666, 768
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 570
Eco147I AGGCCT 2 cut(s) 166, 390
Eco24I GRGCYC 1 cut(s) 62
Eco47I GGWCC 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 2 cut(s) 320, 772
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 424, 758
EcoT14I CCWWGG 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 570
FaiI YATR 9 cut(s) 13, 15, 158, 186, 236, 314, 421, 464, 466
FaqI GGGAC 1 cut(s) 552
FbaI TGATCA 1 cut(s) 666
Fnu4HI GCNGC 4 cut(s) 81, 212, 590, 747
FokI GGATG 5 cut(s) 350, 383, 391, 395, 698
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 4 cut(s) 81, 212, 590, 747
FspBI CTAG 1 cut(s) 704
GluI GCNGC 4 cut(s) 81, 212, 590, 747
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 3 cut(s) 97, 166, 390
HinfI GANTC 4 cut(s) 119, 190, 225, 763
HphI GGTGA 2 cut(s) 338, 466
Hpy188I TCNGA 3 cut(s) 295, 768, 784
Hpy188III TCNNGA 1 cut(s) 434
HpyAV CCTTC 6 cut(s) 70, 240, 251, 355, 380, 724
HpyCH4III ACNGT 2 cut(s) 113, 268
HpyCH4V TGCA 5 cut(s) 154, 410, 452, 521, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 625
Ksp22I TGATCA 1 cut(s) 666
Kzo9I GATC 3 cut(s) 640, 666, 768
Lsp1109I GCAGC 4 cut(s) 67, 198, 601, 758
LweI GCATC 4 cut(s) 141, 328, 427, 490
MaeI CTAG 1 cut(s) 704
MaeIII GTNAC 4 cut(s) 472, 526, 716, 791
MalI GATC 3 cut(s) 642, 668, 770
MboI GATC 3 cut(s) 640, 666, 768
MboII GAAGA 2 cut(s) 329, 650
MflI RGATCY 1 cut(s) 768
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 4 cut(s) 446, 680, 694, 753
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 671
Mox20I TGGCCA 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 426, 760
MvaI CCWGG 2 cut(s) 426, 760
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 2 cut(s) 77, 625
NdeII GATC 3 cut(s) 640, 666, 768
NlaIV GGNNCC 2 cut(s) 568, 770
NmuCI GTSAC 1 cut(s) 472
PceI AGGCCT 2 cut(s) 166, 390
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 4 cut(s) 119, 190, 225, 763
PkrI GCNGC 4 cut(s) 82, 213, 591, 748
PshBI ATTAAT 1 cut(s) 348
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 424, 758
PspGI CCWGG 2 cut(s) 424, 758
PspN4I GGNNCC 2 cut(s) 568, 770
PspPI GGNCC 1 cut(s) 566
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 1 cut(s) 768
SacI GAGCTC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 4 cut(s) 81, 212, 590, 747
Sau3AI GATC 3 cut(s) 640, 666, 768
Sau96I GGNCC 1 cut(s) 566
ScrFI CCNGG 2 cut(s) 426, 760
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 4 cut(s) 141, 328, 427, 490
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 4 cut(s) 446, 680, 694, 753
SseBI AGGCCT 2 cut(s) 166, 390
SsiI CCGC 2 cut(s) 254, 536
SspI AATATT 1 cut(s) 549
SspMI CTAG 1 cut(s) 704
SstI GAGCTC 1 cut(s) 62
StuI AGGCCT 2 cut(s) 166, 390
StyD4I CCNGG 2 cut(s) 424, 758
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 113, 268
TaqI TCGA 2 cut(s) 636, 643
TaqII GACCGA 1 cut(s) 238
TasI AATT 4 cut(s) 446, 680, 694, 753
TfiI GAWTC 4 cut(s) 119, 190, 225, 763
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 273
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 80, 211, 589, 746
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 566
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 2 cut(s) 446, 694
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.