Rw1G023220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000506
Physical Location & Seq
Forward (+)
48977203 .. 48977669
467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023220.1

Sequence Viewer

Length: 294 bp
ATGACGGTATCTCCAATTCGCCAAGAGAGCAAATCGGAAAAGAATCCACATTACAAACGACCTGAACGACGTCGCAGAAAACGAAAAGGACGAAACTTGGGGCAAGAAGTCTACACCCTCTTCCAATGTCAACCCACCACTCCACCAGAGATCCAGCATTCCGGGCCAAATTCGGGTTACGGACTCGGGGAATGTGCGAAAGAAAACACCTTCTACTTTTTTGTCGTCAGTCCGATATCAGACAAATGTGATGCAGTGGATTATAGACGCCATGTCGTTTGGGACCAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.37

Weight (kDa)

9.47

Isoelectric Point (pI)

77.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 169
AcyI GRCGYC 2 cut(s) 70, 268
AfiI CCNNNNNNNGG 1 cut(s) 173
AhdI GACNNNNNGTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 164
ApoI RAATTY 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 164, 283
AsuC2I CCSGG 1 cut(s) 163
AvaI CYCGRG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 283
BcnI CCSGG 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 283
BmeRI GACNNNNNGTC 1 cut(s) 272
BmeT110I CYCGRG 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 164, 283
BmiI GGNNCC 1 cut(s) 284
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 163
BsaHI GRCGYC 2 cut(s) 70, 268
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 173
BshFI GGCC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 185
BsiSI CCGG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 173
BsmI GAATGC 1 cut(s) 157
BsnI GGCC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 185
Bsp143I GATC 1 cut(s) 150
BspANI GGCC 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 1 cut(s) 145
BssMI GATC 1 cut(s) 150
BssNI GRCGYC 2 cut(s) 70, 268
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 70, 268
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 27, 163
BstSCI CCNGG 1 cut(s) 161
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cfr13I GGNCC 2 cut(s) 164, 283
CseI GACGC 1 cut(s) 276
CviAII CATG 1 cut(s) 272
CviJI RGCY 1 cut(s) 166
CviKI_1 RGCY 1 cut(s) 166
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 283
Eco88I CYCGRG 1 cut(s) 185
EcoRV GATATC 1 cut(s) 237
FaeI CATG 1 cut(s) 275
FaiI YATR 2 cut(s) 264, 273
FatI CATG 1 cut(s) 271
FblI GTMKAC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 276
Hin1I GRCGYC 2 cut(s) 70, 268
Hin1II CATG 1 cut(s) 275
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 2 cut(s) 43, 183
HpaII CCGG 1 cut(s) 162
Hpy166II GTNNAC 2 cut(s) 112, 131
Hpy188I TCNGA 3 cut(s) 37, 234, 241
Hpy8I GTNNAC 2 cut(s) 112, 131
Hpy99I CGWCG 2 cut(s) 72, 75
HpyAV CCTTC 1 cut(s) 220
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 163
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 2 cut(s) 70, 268
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 4 cut(s) 75, 159, 167, 175
LweI GCATC 1 cut(s) 241
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 176
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 150
MluCI AATT 2 cut(s) 15, 169
MlyI GAGTC 1 cut(s) 177
MnlI CCTC 1 cut(s) 128
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 27, 163
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 284
PcsI WCGNNNNNNNCGW 3 cut(s) 64, 79, 88
PctI GAATGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 43
PleI GAGTC 1 cut(s) 177
PpsI GAGTC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 2 cut(s) 164, 283
PsuI RGATCY 1 cut(s) 150
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 164, 283
SchI GAGTC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 64, 73, 212
SfaNI GCATC 1 cut(s) 241
SinI GGWCC 1 cut(s) 283
Sse9I AATT 2 cut(s) 15, 169
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 73
TasI AATT 2 cut(s) 15, 169
TfiI GAWTC 1 cut(s) 43
TscAI CASTG 1 cut(s) 261
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 1 cut(s) 261
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 169
XmiI GTMKAC 1 cut(s) 111
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.