Rh1CG041500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000506
Physical Location & Seq
Forward (+)
7789365 .. 7793204
3840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG041500.1

Sequence Viewer

Length: 591 bp
ATGAGGCTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAAGGGATAGTGGAGAATTGGTCAGGGTTAAGCAATCTGATTTTGAAGGAATGGGGTGAGGATAAGGATGCTCTTGTAAAATTATATTTCCAGGTCAGGGATGAGTGGAAGGTTCAGGACTTGAAAACTTGGATTGGTACAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACGTCAATCATTTACATTGTCACTGGGAAACAGAGCCCATTTGCTGAGGTAATACTACAAGAATTTGCAAAAGATACAATACCGCCTGAAAGAATATTTGGTGTTGCTAGGTGTAGCCACAAGATAGAAATACTGAAGCAGCTTCAAGAGAAAGCAGAACATCAAGGGCTAAAGCTGCACTTTGTGGAGGATAGACTAGCAACTCTGAAGGAAGTTATCACAGAACCTGAATTGGATGGATGGAATTTGTATCTAAGTGGTTGGGGGTATAATACACAGAAAGAGAAAGACGAAGCTGCTACAATTCCTAGGATTCAGATTCTTCAACTTTCTGACTTCAATACCAAGCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.37

Weight (kDa)

5.99

Isoelectric Point (pI)

26.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 317
AcsI RAATTY 2 cut(s) 296, 478
AcuI CTGAAG 2 cut(s) 389, 461
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 1 cut(s) 148
AgsI TTSAA 5 cut(s) 97, 175, 380, 560, 574
AjnI CCWGG 2 cut(s) 141, 205
AjuI GAANNNNNNNTTGG 2 cut(s) 315, 347
AluBI AGCT 4 cut(s) 376, 409, 530, 583
AluI AGCT 4 cut(s) 376, 409, 530, 583
AlwNI CAGNNNCTG 1 cut(s) 461
ApeKI GCWGC 3 cut(s) 373, 409, 530
ApoI RAATTY 2 cut(s) 296, 478
AspA2I CCTAGG 1 cut(s) 542
AsuHPI GGTGA 1 cut(s) 119
AvrII CCTAGG 1 cut(s) 542
BanII GRGCYC 2 cut(s) 45, 272
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 3 cut(s) 385, 396, 517
BccI CCATC 2 cut(s) 464, 468
BciT130I CCWGG 2 cut(s) 143, 207
BciVI GTATCC 1 cut(s) 213
BfaI CTAG 3 cut(s) 342, 431, 543
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 3 cut(s) 374, 410, 531
BlnI CCTAGG 1 cut(s) 542
BlsI GCNGC 3 cut(s) 375, 411, 532
Bme1390I CCNGG 2 cut(s) 143, 207
BmrFI CCNGG 2 cut(s) 143, 207
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 109, 208
BmuI ACTGGG 1 cut(s) 267
Bpu10I CCTNAGC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 2 cut(s) 143, 207
BseDI CCNNGG 1 cut(s) 542
BseGI GGATG 4 cut(s) 124, 157, 475, 479
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 262
BseXI GCAGC 3 cut(s) 385, 396, 517
BsgI GTGCAG 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 45, 272
BspACI CCGC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 271
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 542
BssT1I CCWWGG 1 cut(s) 542
Bst2UI CCWGG 2 cut(s) 143, 207
Bst4CI ACNGT 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 279, 488
BstF5I GGATG 4 cut(s) 124, 157, 475, 479
BstMWI GCNNNNNNNGC 1 cut(s) 409
BstNI CCWGG 2 cut(s) 143, 207
BstSCI CCNGG 2 cut(s) 141, 205
BstV1I GCAGC 3 cut(s) 385, 396, 517
BsuI GTATCC 1 cut(s) 213
BtsCI GGATG 4 cut(s) 124, 157, 475, 479
BtsIMutI CAGTG 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 461
Csp6I GTAC 1 cut(s) 189
CviJI RGCY 9 cut(s) 7, 43, 270, 351, 376, 403, 409, 530, 583
CviKI_1 RGCY 9 cut(s) 7, 43, 270, 351, 376, 403, 409, 530, 583
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 2 cut(s) 279, 488
DraIII CACNNNGTG 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 542
Eco24I GRGCYC 2 cut(s) 45, 272
Eco57I CTGAAG 2 cut(s) 389, 461
EcoRII CCWGG 2 cut(s) 141, 205
EcoT14I CCWWGG 1 cut(s) 542
EcoT38I GRGCYC 2 cut(s) 45, 272
ErhI CCWWGG 1 cut(s) 542
FaiI YATR 3 cut(s) 17, 136, 504
FalI AAGNNNNNCTT 2 cut(s) 398, 430
Fnu4HI GCNGC 3 cut(s) 374, 410, 531
FokI GGATG 4 cut(s) 131, 164, 482, 486
FriOI GRGCYC 2 cut(s) 45, 272
Fsp4HI GCNGC 3 cut(s) 374, 410, 531
FspBI CTAG 3 cut(s) 342, 431, 543
GluI GCNGC 3 cut(s) 374, 410, 531
HinfI GANTC 2 cut(s) 547, 553
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 4 cut(s) 90, 441, 552, 568
Hpy188III TCNNGA 2 cut(s) 167, 380
HpyAV CCTTC 6 cut(s) 21, 32, 47, 91, 154, 436
HpyCH4III ACNGT 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 3 cut(s) 35, 302, 412
HpyF10VI GCNNNNNNNGC 1 cut(s) 409
HpyF3I CTNAG 2 cut(s) 279, 488
HpySE526I ACGT 1 cut(s) 236
Lsp1109I GCAGC 3 cut(s) 385, 396, 517
LweI GCATC 2 cut(s) 109, 208
MaeI CTAG 3 cut(s) 342, 431, 543
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 253
MboII GAAGA 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 45, 272
MluCI AATT 6 cut(s) 67, 131, 296, 464, 478, 537
MnlI CCTC 3 cut(s) 103, 274, 415
MseI TTAA 2 cut(s) 80, 225
MspR9I CCNGG 2 cut(s) 143, 207
MvaI CCWGG 2 cut(s) 143, 207
MwoI GCNNNNNNNGC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 547, 553
PkrI GCNGC 3 cut(s) 375, 411, 532
Psp6I CCWGG 2 cut(s) 141, 205
PspGI CCWGG 2 cut(s) 141, 205
PstNI CAGNNNCTG 1 cut(s) 461
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
SaqAI TTAA 2 cut(s) 80, 225
SatI GCNGC 3 cut(s) 374, 410, 531
ScrFI CCNGG 2 cut(s) 143, 207
SduI GDGCHC 2 cut(s) 45, 272
SfaNI GCATC 2 cut(s) 109, 208
Sse9I AATT 6 cut(s) 67, 131, 296, 464, 478, 537
SsiI CCGC 1 cut(s) 317
SspI AATATT 1 cut(s) 330
SspMI CTAG 3 cut(s) 342, 431, 543
StyD4I CCNGG 2 cut(s) 141, 205
StyI CCWWGG 1 cut(s) 542
TaaI ACNGT 1 cut(s) 49
TaiI ACGT 1 cut(s) 239
TasI AATT 6 cut(s) 67, 131, 296, 464, 478, 537
TfiI GAWTC 2 cut(s) 547, 553
Tru1I TTAA 2 cut(s) 80, 225
Tru9I TTAA 2 cut(s) 80, 225
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 3 cut(s) 373, 409, 530
Tsp45I GTSAC 1 cut(s) 253
TspRI CASTG 1 cut(s) 262
XapI RAATTY 2 cut(s) 296, 478
XmaJI CCTAGG 1 cut(s) 542
XspI CTAG 3 cut(s) 342, 431, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.