Rroxscaffold_4G00299870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000506
Physical Location & Seq
Reverse (-)
19790301 .. 19794377
4077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299870.1

Sequence Viewer

Length: 810 bp
ATGGGGAATTTGTACGCTTTGGATTTCGACGGAGTTCTGTGTGATAGCTGCGGAGAGAGCTATGCCACTGCTGCCAAGGTTGCTAAAGTGATATGGCCAACGCTATTCAACGATGTGGATTCAAGTTTAGAGGATTGGGTTGTTGATCAAATCCGCATCGTGCGAGCTGTGCTGCAAAACCGGTATGACAATCTTCTACTTGTGAGGTTACTTTTGGAAATGAGGCTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAAGGGATAGTGGAGAATTGGTCAGAGTTGAAGAATCTGATTTTGAAGGAATGGGGTGAGGATAAGGATGCTCTTGTAAAATTATATTTCCAGGTCAGGGATGAGTGGAAGGTTCAGGACTTGAAAACTTGGATTGGTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACCTCAACCATTTACATTGTCACTGGGAAACAGAGCCCATTTGCTGAGGTAATACTACAAGAATTTGCAAAAGATACAATACCGCCTGAAAGAATATTTGGTGTCGCTAGTTTCAGCCACAAGATAGAAGTACTGAAGCAGCTTCAAGAGAAAGCAGAACATCAAGGGCTGAAGCTGCACTTTGTGGAGGATAGACTGGCAACTCTGAAGGAAGCTATCGAAGAACCTGAATTGGATGGATGGAATTTGTATCTAAGTGGTTGGGGGTACAATACACAGAAAGAGAAAGACGAAGCTGCTAGAATTCCTAGGATTCAGATTCTTCAACTTTCTGACTTCAATACCAAGCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.68

Weight (kDa)

5.13

Isoelectric Point (pI)

29.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 51, 154, 536
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 4 cut(s) 7, 515, 697, 756
AcuI CTGAAG 3 cut(s) 608, 644, 680
AdeI CACNNNGTG 1 cut(s) 637
AfaI GTAC 3 cut(s) 14, 585, 722
AfiI CCNNNNNNNGG 1 cut(s) 367
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 8 cut(s) 109, 123, 301, 316, 394, 599, 779, 793
AjnI CCWGG 2 cut(s) 360, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 8 cut(s) 48, 60, 167, 595, 628, 668, 749, 802
AluI AGCT 8 cut(s) 48, 60, 167, 595, 628, 668, 749, 802
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 6 cut(s) 48, 71, 172, 592, 628, 749
ApoI RAATTY 4 cut(s) 7, 515, 697, 756
AsiGI ACCGGT 1 cut(s) 180
AspA2I CCTAGG 1 cut(s) 761
AsuHPI GGTGA 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 761
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 2 cut(s) 264, 491
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 6 cut(s) 35, 58, 159, 604, 615, 736
BccI CCATC 2 cut(s) 683, 687
BciT130I CCWGG 2 cut(s) 362, 426
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 1 cut(s) 145
BfaI CTAG 3 cut(s) 561, 753, 762
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 6 cut(s) 49, 72, 173, 593, 629, 750
BlnI CCTAGG 1 cut(s) 761
BlsI GCNGC 6 cut(s) 50, 73, 174, 594, 630, 751
BmcAI AGTACT 1 cut(s) 585
Bme1390I CCNGG 2 cut(s) 362, 426
BmrFI CCNGG 2 cut(s) 362, 426
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 165, 328, 427
BmuI ACTGGG 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 75, 761
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 481, 654
BseBI CCWGG 2 cut(s) 362, 426
BseDI CCNNGG 2 cut(s) 75, 761
BseGI GGATG 4 cut(s) 343, 376, 694, 698
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 2 cut(s) 481, 654
BseXI GCAGC 6 cut(s) 35, 58, 159, 604, 615, 736
BsgI GTGCAG 1 cut(s) 614
BshFI GGCC 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 367
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 264, 491
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 3 cut(s) 51, 154, 536
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 490
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 2 cut(s) 481, 654
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 2 cut(s) 75, 761
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 2 cut(s) 75, 761
Bst2UI CCWGG 2 cut(s) 362, 426
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 498, 707
BstF5I GGATG 4 cut(s) 343, 376, 694, 698
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 5 cut(s) 57, 71, 80, 169, 628
BstNI CCWGG 2 cut(s) 362, 426
BstSCI CCNGG 2 cut(s) 360, 424
BstV1I GCAGC 6 cut(s) 35, 58, 159, 604, 615, 736
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 4 cut(s) 343, 376, 694, 698
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 2 cut(s) 66, 474
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 3 cut(s) 13, 584, 721
CspAI ACCGGT 1 cut(s) 180
CviQI GTAC 3 cut(s) 13, 584, 721
DdeI CTNAG 2 cut(s) 498, 707
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
DraIII CACNNNGTG 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 75, 761
Eco24I GRGCYC 2 cut(s) 264, 491
Eco57I CTGAAG 3 cut(s) 608, 644, 680
EcoRI GAATTC 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 360, 424
EcoT14I CCWWGG 2 cut(s) 75, 761
EcoT38I GRGCYC 2 cut(s) 264, 491
ErhI CCWWGG 2 cut(s) 75, 761
FaiI YATR 5 cut(s) 63, 94, 186, 236, 355
FalI AAGNNNNNCTT 2 cut(s) 617, 649
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 6 cut(s) 49, 72, 173, 593, 629, 750
FokI GGATG 4 cut(s) 350, 383, 701, 705
FriOI GRGCYC 2 cut(s) 264, 491
Fsp4HI GCNGC 6 cut(s) 49, 72, 173, 593, 629, 750
FspBI CTAG 3 cut(s) 561, 753, 762
GluI GCNGC 6 cut(s) 49, 72, 173, 593, 629, 750
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 181
HinfI GANTC 4 cut(s) 119, 304, 766, 772
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 5 cut(s) 295, 309, 660, 771, 787
Hpy188III TCNNGA 2 cut(s) 386, 599
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 6 cut(s) 240, 251, 266, 310, 373, 655
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 5 cut(s) 175, 254, 410, 521, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 71, 80, 169, 628
HpyF3I CTNAG 2 cut(s) 498, 707
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
Lsp1109I GCAGC 6 cut(s) 35, 58, 159, 604, 615, 736
LweI GCATC 3 cut(s) 165, 328, 427
MaeI CTAG 3 cut(s) 561, 753, 762
MaeIII GTNAC 2 cut(s) 207, 472
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 185, 313, 686, 767
MhlI GDGCHC 2 cut(s) 264, 491
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 7 cut(s) 7, 286, 350, 515, 683, 697, 756
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 7 cut(s) 124, 198, 216, 322, 466, 493, 634
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 2 cut(s) 362, 426
MvaI CCWGG 2 cut(s) 362, 426
MwoI GCNNNNNNNGC 5 cut(s) 57, 71, 80, 169, 628
NdeII GATC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 472
PfeI GAWTC 4 cut(s) 119, 304, 766, 772
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 6 cut(s) 50, 73, 174, 594, 630, 751
Psp6I CCWGG 2 cut(s) 360, 424
PspGI CCWGG 2 cut(s) 360, 424
RsaI GTAC 3 cut(s) 14, 585, 722
RsaNI GTAC 3 cut(s) 13, 584, 721
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 6 cut(s) 49, 72, 173, 593, 629, 750
Sau3AI GATC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 585
ScrFI CCNGG 2 cut(s) 362, 426
SduI GDGCHC 2 cut(s) 264, 491
SfaNI GCATC 3 cut(s) 165, 328, 427
Sse9I AATT 7 cut(s) 7, 286, 350, 515, 683, 697, 756
SsiI CCGC 3 cut(s) 51, 154, 536
SspI AATATT 1 cut(s) 549
SspMI CTAG 3 cut(s) 561, 753, 762
StyD4I CCNGG 2 cut(s) 360, 424
StyI CCWWGG 2 cut(s) 75, 761
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 27, 672
TasI AATT 7 cut(s) 7, 286, 350, 515, 683, 697, 756
TatI WGTACW 1 cut(s) 583
TfiI GAWTC 4 cut(s) 119, 304, 766, 772
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 2 cut(s) 73, 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 6 cut(s) 48, 71, 172, 592, 628, 749
Tsp45I GTSAC 1 cut(s) 472
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 73, 481
XapI RAATTY 4 cut(s) 7, 515, 697, 756
XmaJI CCTAGG 1 cut(s) 761
XspI CTAG 3 cut(s) 561, 753, 762
ZrmI AGTACT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.