Rmu_sc0003229.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003229.1
OG0000506
Physical Location & Seq
Reverse (-)
1532 .. 4378
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003229.1_g000002.1.cds

Sequence Viewer

Length: 861 bp
atgacggtatctccaattcgccaagagagcaaatcggaaaataatccacattacaaacgacctgaacgacgtcgcagaaaacgaaaaggacgaaacttggggcaagaagtctacaccctcttccaatgtcaacccaccactccaccagagatccaggtggagatgatgaaccagcattccgggccaaattcgggttacggattcggggtatgtgcgaaagcaaacacctttaacttttttgtcgtcagtctgatatcagacaaatgtgatgcggtggattatagacgccatacctccgtcacagaaaccaaggtaaggaccagagggagtgaagaaatgggggatttgtacgctttggatttcgatggagttatctgtgatagctgcggagagagctccgtctctgctgtgaaggctgctaaagtgagatggccagctctgttcaagggtgttgattcggctttagagaattgggttgttgatcaaatgcacgtagtgagacctgtggtggaaactgggtatgagaatcttttacttgtgaggttacttctggagatgaaaattccttctataaggaagtcatcagttgcagaagggctcacagtggaaggaatattggagaagtggtcagcattgaagcctgtgattatggaggaatggggtgaggaaagggatcctcttgtaaatctgttcggaaaggtcagggatgagtggatggaccaggacttgaatacttggattggtgcaaataggaggatctccaggtcttcgaaaaacttgatctccaatctttatctcgtaggcctctggttggctcaacacaaactccttcaactagtgaatagggaaagacgaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

286

Amino Acids

32.73

Weight (kDa)

9.03

Isoelectric Point (pI)

47.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 111
AciI CCGC 2 cut(s) 272, 387
AclWI GGATC 4 cut(s) 145, 668, 681, 764
AcoI YGGCCR 1 cut(s) 431
AcsI RAATTY 2 cut(s) 187, 561
AcyI GRCGYC 2 cut(s) 70, 286
AdeI CACNNNGTG 1 cut(s) 496
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 3 cut(s) 191, 315, 811
AgsI TTSAA 4 cut(s) 445, 637, 730, 833
AhlI ACTAGT 1 cut(s) 835
AjnI CCWGG 3 cut(s) 153, 720, 761
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AluBI AGCT 3 cut(s) 384, 396, 437
AluI AGCT 3 cut(s) 384, 396, 437
Alw21I GWGCWC 1 cut(s) 398
Alw26I GTCTC 2 cut(s) 406, 493
AlwI GGATC 4 cut(s) 145, 668, 681, 764
AoxI GGCC 3 cut(s) 182, 431, 802
ApeKI GCWGC 2 cut(s) 384, 416
ApoI RAATTY 2 cut(s) 187, 561
AspS9I GGNCC 3 cut(s) 182, 318, 718
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 674
AsuII TTCGAA 1 cut(s) 770
AvaII GGWCC 2 cut(s) 318, 718
BalI TGGCCA 1 cut(s) 433
BamHI GGATCC 1 cut(s) 673
BanII GRGCYC 2 cut(s) 398, 600
BbsI GAAGAC 1 cut(s) 759
Bbv12I GWGCWC 1 cut(s) 398
BbvI GCAGC 2 cut(s) 371, 403
BccI CCATC 3 cut(s) 359, 423, 709
BciT130I CCWGG 3 cut(s) 155, 722, 763
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 2 cut(s) 406, 493
BcuI ACTAGT 1 cut(s) 835
BfaI CTAG 1 cut(s) 836
BisI GCNGC 2 cut(s) 385, 417
BlsI GCNGC 2 cut(s) 386, 418
Bme1390I CCNGG 4 cut(s) 155, 181, 722, 763
Bme18I GGWCC 2 cut(s) 318, 718
BmgT120I GGNCC 3 cut(s) 182, 318, 718
BmiI GGNNCC 1 cut(s) 675
BmrFI CCNGG 4 cut(s) 155, 181, 722, 763
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 525
BpiI GAAGAC 1 cut(s) 759
BpmI CTGGAG 2 cut(s) 572, 745
Bpu14I TTCGAA 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 493
BsaHI GRCGYC 2 cut(s) 70, 286
BsaI GGTCTC 1 cut(s) 493
BsaJI CCNNGG 1 cut(s) 309
BsaXI ACNNNNNCTCC 7 cut(s) 25, 611, 641, 767, 797, 810, 840
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 315, 811
Bse1I ACTGG 1 cut(s) 520
BseBI CCWGG 3 cut(s) 155, 722, 763
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 2 cut(s) 712, 720
BseLI CCNNNNNNNGG 3 cut(s) 191, 315, 811
BseNI ACTGG 1 cut(s) 520
BseXI GCAGC 2 cut(s) 371, 403
BshFI GGCC 3 cut(s) 184, 433, 804
BsiHKAI GWGCWC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 3 cut(s) 191, 315, 811
BsmAI GTCTC 2 cut(s) 406, 493
BsmBI CGTCTC 1 cut(s) 406
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 3 cut(s) 184, 433, 804
Bso31I GGTCTC 1 cut(s) 493
Bsp119I TTCGAA 1 cut(s) 770
Bsp1286I GDGCHC 2 cut(s) 398, 600
Bsp143I GATC 5 cut(s) 150, 481, 673, 756, 780
BspACI CCGC 2 cut(s) 272, 387
BspANI GGCC 3 cut(s) 184, 433, 804
BspLI GGNNCC 1 cut(s) 675
BspPI GGATC 4 cut(s) 145, 668, 681, 764
BspT104I TTCGAA 1 cut(s) 770
BspTNI GGTCTC 1 cut(s) 493
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 5 cut(s) 150, 481, 673, 756, 780
BssNI GRCGYC 2 cut(s) 70, 286
BssT1I CCWWGG 1 cut(s) 309
Bst2UI CCWGG 3 cut(s) 155, 722, 763
Bst4CI ACNGT 2 cut(s) 7, 604
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 70, 286
BstBAI YACGTR 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 435
BstF5I GGATG 2 cut(s) 712, 720
BstKTI GATC 5 cut(s) 153, 484, 676, 759, 783
BstMAI GTCTC 2 cut(s) 406, 493
BstMBI GATC 5 cut(s) 150, 481, 673, 756, 780
BstMWI GCNNNNNNNGC 4 cut(s) 27, 181, 393, 413
BstNI CCWGG 3 cut(s) 155, 722, 763
BstSCI CCNGG 4 cut(s) 153, 179, 720, 761
BstV1I GCAGC 2 cut(s) 371, 403
BstV2I GAAGAC 1 cut(s) 759
BstX2I RGATCY 3 cut(s) 150, 673, 756
BstYI RGATCY 3 cut(s) 150, 673, 756
BsuRI GGCC 3 cut(s) 184, 433, 804
BtsCI GGATG 2 cut(s) 712, 720
BtsIMutI CAGTG 1 cut(s) 609
Cac8I GCNNGC 1 cut(s) 435
Cfr13I GGNCC 3 cut(s) 182, 318, 718
CseI GACGC 1 cut(s) 294
Csp6I GTAC 1 cut(s) 349
CviQI GTAC 1 cut(s) 349
DpnI GATC 5 cut(s) 152, 483, 675, 758, 782
DpnII GATC 5 cut(s) 150, 481, 673, 756, 780
DraIII CACNNNGTG 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 431
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 396
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 804
Eco24I GRGCYC 2 cut(s) 398, 600
Eco31I GGTCTC 1 cut(s) 493
Eco32I GATATC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 318, 718
Eco53kI GAGCTC 1 cut(s) 396
EcoICRI GAGCTC 1 cut(s) 396
EcoRII CCWGG 3 cut(s) 153, 720, 761
EcoRV GATATC 1 cut(s) 255
EcoT14I CCWWGG 1 cut(s) 309
EcoT38I GRGCYC 2 cut(s) 398, 600
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 406
FaiI YATR 6 cut(s) 211, 282, 291, 522, 572, 650
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 1 cut(s) 111
Fnu4HI GCNGC 2 cut(s) 385, 417
FokI GGATG 2 cut(s) 719, 727
FriOI GRGCYC 2 cut(s) 398, 600
Fsp4HI GCNGC 2 cut(s) 385, 417
FspBI CTAG 1 cut(s) 836
GluI GCNGC 2 cut(s) 385, 417
GsuI CTGGAG 2 cut(s) 572, 745
HaeIII GGCC 3 cut(s) 184, 433, 804
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 294
Hin1I GRCGYC 2 cut(s) 70, 286
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 3 cut(s) 201, 455, 526
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 674
Hpy166II GTNNAC 2 cut(s) 112, 131
Hpy188I TCNGA 4 cut(s) 37, 252, 259, 695
Hpy188III TCNNGA 1 cut(s) 551
Hpy8I GTNNAC 2 cut(s) 112, 131
Hpy99I CGWCG 2 cut(s) 72, 75
HpyAV CCTTC 5 cut(s) 406, 576, 587, 602, 839
HpyCH4III ACNGT 2 cut(s) 7, 604
HpyCH4IV ACGT 2 cut(s) 70, 492
HpyCH4V TGCA 3 cut(s) 490, 590, 746
HpyF10VI GCNNNNNNNGC 4 cut(s) 27, 181, 393, 413
HpySE526I ACGT 2 cut(s) 70, 492
Hsp92I GRCGYC 2 cut(s) 70, 286
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 5 cut(s) 150, 481, 673, 756, 780
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 2 cut(s) 371, 403
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 836
MaeII ACGT 2 cut(s) 70, 492
MaeIII GTNAC 3 cut(s) 194, 298, 543
MalI GATC 5 cut(s) 152, 483, 675, 758, 782
MboI GATC 5 cut(s) 150, 481, 673, 756, 780
MboII GAAGA 3 cut(s) 112, 344, 759
MflI RGATCY 3 cut(s) 150, 673, 756
MhlI GDGCHC 2 cut(s) 398, 600
MlsI TGGCCA 1 cut(s) 433
MluCI AATT 4 cut(s) 15, 187, 469, 561
MluNI TGGCCA 1 cut(s) 433
MnlI CCTC 9 cut(s) 128, 304, 317, 534, 646, 658, 687, 747, 815
Mox20I TGGCCA 1 cut(s) 433
MscI TGGCCA 1 cut(s) 433
MseI TTAA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 433
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 4 cut(s) 155, 181, 722, 763
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 3 cut(s) 155, 722, 763
MwoI GCNNNNNNNGC 4 cut(s) 27, 181, 393, 413
NciI CCSGG 1 cut(s) 181
NdeII GATC 5 cut(s) 150, 481, 673, 756, 780
NlaIV GGNNCC 1 cut(s) 675
NmuCI GTSAC 1 cut(s) 298
NspV TTCGAA 1 cut(s) 770
PceI AGGCCT 1 cut(s) 804
PcsI WCGNNNNNNNCGW 3 cut(s) 64, 79, 88
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 3 cut(s) 201, 455, 526
PkrI GCNGC 2 cut(s) 386, 418
Ppu21I YACGTR 1 cut(s) 493
Psp124BI GAGCTC 1 cut(s) 398
Psp6I CCWGG 3 cut(s) 153, 720, 761
PspGI CCWGG 3 cut(s) 153, 720, 761
PspN4I GGNNCC 1 cut(s) 675
PspPI GGNCC 3 cut(s) 182, 318, 718
PsuI RGATCY 3 cut(s) 150, 673, 756
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SacI GAGCTC 1 cut(s) 398
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 385, 417
Sau3AI GATC 5 cut(s) 150, 481, 673, 756, 780
Sau96I GGNCC 3 cut(s) 182, 318, 718
ScrFI CCNGG 4 cut(s) 155, 181, 722, 763
SduI GDGCHC 2 cut(s) 398, 600
SfaNI GCATC 1 cut(s) 259
SfuI TTCGAA 1 cut(s) 770
SinI GGWCC 2 cut(s) 318, 718
SpeI ACTAGT 1 cut(s) 835
Sse9I AATT 4 cut(s) 15, 187, 469, 561
SseBI AGGCCT 1 cut(s) 804
SsiI CCGC 2 cut(s) 272, 387
SspI AATATT 1 cut(s) 615
SspMI CTAG 1 cut(s) 836
SstI GAGCTC 1 cut(s) 398
StuI AGGCCT 1 cut(s) 804
StyD4I CCNGG 4 cut(s) 153, 179, 720, 761
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 2 cut(s) 7, 604
TaiI ACGT 2 cut(s) 73, 495
TaqI TCGA 2 cut(s) 363, 770
TasI AATT 4 cut(s) 15, 187, 469, 561
TfiI GAWTC 3 cut(s) 201, 455, 526
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 609
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 384, 416
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 2 cut(s) 182, 572
TspGWI ACGGA 3 cut(s) 213, 286, 388
TspRI CASTG 1 cut(s) 609
VpaK11BI GGWCC 2 cut(s) 318, 718
XapI RAATTY 2 cut(s) 187, 561
XmiI GTMKAC 1 cut(s) 111
XspI CTAG 1 cut(s) 836
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.