Rh1BG230700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000506
Physical Location & Seq
Forward (+)
35277195 .. 35290273
13079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG230700.1

Sequence Viewer

Length: 732 bp
ATGGGGGATTTGTACGCTTTGGATTTCGATGGGGTTCTGTGCGATAGCTGCGGAGAGAGCTACGCCTCTGCTGCCAAGGCTGCTAAAGTGAGATGGCCAAAGCTATTCAGTGATGTGGATTCAAGTTTGAAGGATTGGATGGTTGATCAGATCGGCATCGTGAGACCTGTGCTGCAATCTCAGTATGAGAATCTGATACTTGTGAGGCTACTTCTGGAGATGAAGGATCCTTCTAGAAGGGAGTCATCAGTTGCAGGAGGGCTCACAGTGGAGGGGATAGTGGAGAATTGGGATGAGTGGAAGGACCGGGACCTAGAAACTTGGACTGCTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACCTCAACCATTTACATTGTCACTGGGAAACAGAGCCCATTTGCTGAGGTAATATTACAAGAATTTGCAAAAGATACAATACCGCCTGAAAGAATATTTGGTGTTGCTAGTTGCAGCCACAAGATAGAAGTACTGAAGCAGCTTCAAGAGAAAGCAGAACATCAAGGGCTGAAGCTGCACTTTGTGGAGGATAGACTGGCAACTCTGAAGGAAGCTATCGAAGAACCTAAATTGGATGGATGGAATTTGTATCTAAGTGGTTGGGGATACAATACACAGAAAGAGAAAGACGAAGCTGCTACAATTCCTAGGATTCAGATTCTTCAACTTTCTGACTTCAATACCAAGCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

27.38

Weight (kDa)

5.0

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 458
AclWI GGATC 2 cut(s) 221, 234
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 2 cut(s) 437, 619
AcuI CTGAAG 3 cut(s) 530, 566, 602
AdeI CACNNNGTG 1 cut(s) 559
AfaI GTAC 2 cut(s) 14, 507
AgsI TTSAA 5 cut(s) 123, 130, 521, 701, 715
AjnI CCWGG 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 456, 488
AluBI AGCT 8 cut(s) 48, 60, 103, 517, 550, 590, 671, 724
AluI AGCT 8 cut(s) 48, 60, 103, 517, 550, 590, 671, 724
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 9 cut(s) 48, 71, 80, 172, 329, 489, 514, 550, 671
ApoI RAATTY 2 cut(s) 437, 619
AspA2I CCTAGG 1 cut(s) 683
AspS9I GGNCC 2 cut(s) 304, 310
AsuC2I CCSGG 1 cut(s) 308
AvaII GGWCC 2 cut(s) 304, 310
AvrII CCTAGG 1 cut(s) 683
BalI TGGCCA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 226
BanII GRGCYC 2 cut(s) 264, 413
BbvCI CCTCAGC 1 cut(s) 420
BbvI GCAGC 9 cut(s) 35, 58, 67, 159, 316, 501, 526, 537, 658
BccI CCATC 5 cut(s) 23, 87, 133, 605, 609
BciT130I CCWGG 1 cut(s) 348
BciVI GTATCC 2 cut(s) 354, 635
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 4 cut(s) 234, 314, 483, 684
BfuI GTATCC 2 cut(s) 354, 635
BisI GCNGC 9 cut(s) 49, 72, 81, 173, 330, 490, 515, 551, 672
BlnI CCTAGG 1 cut(s) 683
BlsI GCNGC 9 cut(s) 50, 73, 82, 174, 331, 491, 516, 552, 673
BmcAI AGTACT 1 cut(s) 507
Bme1390I CCNGG 2 cut(s) 308, 348
Bme18I GGWCC 2 cut(s) 304, 310
BmgT120I GGNCC 2 cut(s) 304, 310
BmiI GGNNCC 2 cut(s) 228, 311
BmrFI CCNGG 2 cut(s) 308, 348
BmrI ACTGGG 1 cut(s) 408
BmsI GCATC 2 cut(s) 165, 349
BmuI ACTGGG 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 75, 683
Bse1I ACTGG 2 cut(s) 403, 576
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 2 cut(s) 75, 683
BseGI GGATG 4 cut(s) 144, 298, 616, 620
BseJI GATNNNNATC 1 cut(s) 155
BseMII CTCAG 2 cut(s) 194, 411
BseNI ACTGG 2 cut(s) 403, 576
BseXI GCAGC 9 cut(s) 35, 58, 67, 159, 316, 501, 526, 537, 658
BsgI GTGCAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 307
BslFI GGGAC 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 264, 413
Bsp143I GATC 3 cut(s) 145, 150, 226
BspACI CCGC 2 cut(s) 51, 458
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 193, 412
BspLI GGNNCC 2 cut(s) 228, 311
BspPI GGATC 2 cut(s) 221, 234
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 403, 576
BssECI CCNNGG 2 cut(s) 75, 683
BssMI GATC 3 cut(s) 145, 150, 226
BssT1I CCWWGG 2 cut(s) 75, 683
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 1 cut(s) 268
BstDEI CTNAG 3 cut(s) 180, 420, 629
BstF5I GGATG 4 cut(s) 144, 298, 616, 620
BstKTI GATC 3 cut(s) 148, 153, 229
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 3 cut(s) 145, 150, 226
BstMWI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 550
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 306, 346
BstV1I GCAGC 9 cut(s) 35, 58, 67, 159, 316, 501, 526, 537, 658
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuI GTATCC 2 cut(s) 354, 635
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 4 cut(s) 144, 298, 616, 620
BtsIMutI CAGTG 3 cut(s) 115, 273, 396
Cfr13I GGNCC 2 cut(s) 304, 310
Csp6I GTAC 2 cut(s) 13, 506
CviQI GTAC 2 cut(s) 13, 506
DdeI CTNAG 3 cut(s) 180, 420, 629
DpnI GATC 3 cut(s) 147, 152, 228
DpnII GATC 3 cut(s) 145, 150, 226
DraIII CACNNNGTG 1 cut(s) 559
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 75, 683
Eco24I GRGCYC 2 cut(s) 264, 413
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 304, 310
Eco57I CTGAAG 3 cut(s) 530, 566, 602
EcoO109I RGGNCCY 1 cut(s) 310
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 75, 683
EcoT38I GRGCYC 2 cut(s) 264, 413
ErhI CCWWGG 2 cut(s) 75, 683
FaiI YATR 1 cut(s) 186
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 1 cut(s) 323
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 9 cut(s) 49, 72, 81, 173, 330, 490, 515, 551, 672
FokI GGATG 4 cut(s) 151, 305, 623, 627
FriOI GRGCYC 2 cut(s) 264, 413
Fsp4HI GCNGC 9 cut(s) 49, 72, 81, 173, 330, 490, 515, 551, 672
FspBI CTAG 4 cut(s) 234, 314, 483, 684
GluI GCNGC 9 cut(s) 49, 72, 81, 173, 330, 490, 515, 551, 672
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 307
HinfI GANTC 5 cut(s) 119, 190, 242, 688, 694
HpaII CCGG 1 cut(s) 307
Hpy188I TCNGA 5 cut(s) 150, 195, 582, 693, 709
Hpy188III TCNNGA 4 cut(s) 160, 215, 234, 521
HpyAV CCTTC 6 cut(s) 124, 217, 231, 240, 295, 577
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 175, 254, 332, 443, 489, 553
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 550
HpyF3I CTNAG 3 cut(s) 180, 420, 629
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 145, 150, 226
LpnPI CCDG 9 cut(s) 180, 200, 240, 320, 333, 360, 384, 474, 557
Lsp1109I GCAGC 9 cut(s) 35, 58, 67, 159, 316, 501, 526, 537, 658
LweI GCATC 2 cut(s) 165, 349
MaeI CTAG 4 cut(s) 234, 314, 483, 684
MaeIII GTNAC 1 cut(s) 394
MalI GATC 3 cut(s) 147, 152, 228
MboI GATC 3 cut(s) 145, 150, 226
MboII GAAGA 2 cut(s) 608, 689
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 264, 413
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 5 cut(s) 286, 437, 605, 619, 678
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 7 cut(s) 76, 198, 251, 265, 388, 415, 556
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 366
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 307
MspR9I CCNGG 2 cut(s) 308, 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 550
NciI CCSGG 1 cut(s) 308
NdeII GATC 3 cut(s) 145, 150, 226
NlaIV GGNNCC 2 cut(s) 228, 311
NmuCI GTSAC 1 cut(s) 394
PfeI GAWTC 4 cut(s) 119, 190, 688, 694
PkrI GCNGC 9 cut(s) 50, 73, 82, 174, 331, 491, 516, 552, 673
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 2 cut(s) 228, 311
PspPI GGNCC 2 cut(s) 304, 310
PspPPI RGGWCCY 1 cut(s) 310
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 2 cut(s) 14, 507
RsaNI GTAC 2 cut(s) 13, 506
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 9 cut(s) 49, 72, 81, 173, 330, 490, 515, 551, 672
Sau3AI GATC 3 cut(s) 145, 150, 226
Sau96I GGNCC 2 cut(s) 304, 310
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 308, 348
SduI GDGCHC 2 cut(s) 264, 413
SfaNI GCATC 2 cut(s) 165, 349
SinI GGWCC 2 cut(s) 304, 310
Sse9I AATT 5 cut(s) 286, 437, 605, 619, 678
SsiI CCGC 2 cut(s) 51, 458
SspI AATATT 2 cut(s) 429, 471
SspMI CTAG 4 cut(s) 234, 314, 483, 684
StyD4I CCNGG 2 cut(s) 306, 346
StyI CCWWGG 2 cut(s) 75, 683
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 27, 594
TasI AATT 5 cut(s) 286, 437, 605, 619, 678
TatI WGTACW 1 cut(s) 505
TfiI GAWTC 4 cut(s) 119, 190, 688, 694
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TscAI CASTG 3 cut(s) 115, 273, 403
TseFI GTSAC 1 cut(s) 394
TseI GCWGC 9 cut(s) 48, 71, 80, 172, 329, 489, 514, 550, 671
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 3 cut(s) 115, 273, 403
VpaK11BI GGWCC 2 cut(s) 304, 310
XapI RAATTY 2 cut(s) 437, 619
XbaI TCTAGA 1 cut(s) 233
XmaJI CCTAGG 1 cut(s) 683
XspI CTAG 4 cut(s) 234, 314, 483, 684
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.