FvH4_7g14620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000506
Physical Location & Seq
Forward (+)
12895173 .. 12897710
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14620.t1

Sequence Viewer

Length: 651 bp
ATGGGGGATTTGTACGCTTTGGATTTCGATGGAGTTATCTGTGATAGCTGCGGAGAGAGCTCCGTCTCTGCTGTCAAGGCTGCAAAAGTGAGATGGCCAGCTCTGTTCAACGGTGTCGATTCGGCTTTGGAGAATTGGGTTGTTGATCAAATGCACGTAGTGAGACCTGTGGTGGAAACTGGGTATGAGAATCTTTTGCTTGTGAGGTTGCTTTTGGAGATGAGAGTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTTACTGTGGAGGGGATATTGGAGAAGTGGTCAGTATTGAAGCCTGTGATTATGAAGGAATGGGGTGAGGAAAAGGATCCTCTTGTCAATTTGTTTGGAAAGGTCAGGGATGAGTGGATGGACCAGGACATGGCTACTTGGATTGGTGCAAATAGAATATATCCAGGTGTATCTGATGCTCTGAGATTTGCAAGCTCGACAATATACATAGTCACCACAAAGCAGAGCCGGTTTGCTGATGCTTTACTGCGAGAACTTGCAGGAGTTATGATACCACCTGAAAGAATCTTTGGTCTTGGATCTGGTCCTAAGGTAGAAGTATTGAAGATGCTTCAGAAGAAACCAGAACATCAAGGGCTGAAACTACATGCCTTTGAATGGGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.22

Weight (kDa)

5.34

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 391
AciI CCGC 1 cut(s) 51
AclWI GGATC 3 cut(s) 332, 345, 568
AcoI YGGCCR 1 cut(s) 95
AcuI CTGAAG 1 cut(s) 578
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 391, 639
AgsI TTSAA 4 cut(s) 109, 301, 586, 638
AjnI CCWGG 2 cut(s) 384, 424
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 4 cut(s) 48, 60, 101, 456
AluI AGCT 4 cut(s) 48, 60, 101, 456
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 70, 157
AlwI GGATC 3 cut(s) 332, 345, 568
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 48, 80
AspS9I GGNCC 2 cut(s) 382, 566
AsuHPI GGTGA 2 cut(s) 338, 466
AvaII GGWCC 2 cut(s) 382, 566
AxyI CCTNAGG 1 cut(s) 570
BalI TGGCCA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 35, 67
BccI CCATC 3 cut(s) 23, 87, 373
BciT130I CCWGG 2 cut(s) 386, 426
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 70, 157
BisI GCNGC 2 cut(s) 49, 81
BlsI GCNGC 2 cut(s) 50, 82
Bme1390I CCNGG 2 cut(s) 386, 426
Bme18I GGWCC 2 cut(s) 382, 566
BmgT120I GGNCC 2 cut(s) 382, 566
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 386, 426
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 427, 490, 579
BmuI ACTGGG 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 639
Bse118I RCCGGY 1 cut(s) 489
Bse1I ACTGG 1 cut(s) 184
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 2 cut(s) 386, 426
BseGI GGATG 2 cut(s) 376, 384
BseLI CCNNNNNNNGG 2 cut(s) 391, 639
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 35, 67
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 490
BslI CCNNNNNNNGG 2 cut(s) 391, 639
BsmAI GTCTC 2 cut(s) 70, 157
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 4 cut(s) 145, 337, 560, 643
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 435
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 3 cut(s) 332, 345, 568
BspTNI GGTCTC 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 489
BsrI ACTGG 1 cut(s) 184
BssAI RCCGGY 1 cut(s) 489
BssMI GATC 4 cut(s) 145, 337, 560, 643
Bst2UI CCWGG 2 cut(s) 386, 426
Bst4CI ACNGT 2 cut(s) 113, 268
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 99, 454
BstDEI CTNAG 2 cut(s) 443, 570
BstF5I GGATG 2 cut(s) 376, 384
BstKTI GATC 4 cut(s) 148, 340, 563, 646
BstMAI GTCTC 2 cut(s) 70, 157
BstMBI GATC 4 cut(s) 145, 337, 560, 643
BstMWI GCNNNNNNNGC 2 cut(s) 57, 77
BstNI CCWGG 2 cut(s) 386, 426
BstNSI RCATGY 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 384, 424
BstV1I GCAGC 2 cut(s) 35, 67
BstX2I RGATCY 2 cut(s) 337, 560
BstYI RGATCY 2 cut(s) 337, 560
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 2 cut(s) 376, 384
Cac8I GCNNGC 2 cut(s) 99, 454
Cfr10I RCCGGY 1 cut(s) 489
Cfr13I GGNCC 2 cut(s) 382, 566
Csp6I GTAC 1 cut(s) 13
CviAII CATG 2 cut(s) 391, 629
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 443, 570
DpnI GATC 4 cut(s) 147, 339, 562, 645
DpnII GATC 4 cut(s) 145, 337, 560, 643
DraIII CACNNNGTG 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 382, 566
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 1 cut(s) 578
Eco81I CCTNAGG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 60
EcoRII CCWGG 2 cut(s) 384, 424
EcoT38I GRGCYC 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 2 cut(s) 394, 632
FaiI YATR 9 cut(s) 186, 236, 314, 392, 421, 466, 470, 530, 630
FatI CATG 2 cut(s) 390, 628
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 49, 81
FokI GGATG 2 cut(s) 383, 391
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 49, 81
GluI GCNGC 2 cut(s) 49, 81
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 490
Hin1II CATG 2 cut(s) 394, 632
HinfI GANTC 3 cut(s) 119, 190, 546
HpaII CCGG 1 cut(s) 490
HphI GGTGA 2 cut(s) 338, 466
Hpy188I TCNGA 3 cut(s) 436, 444, 597
HpyAV CCTTC 3 cut(s) 240, 251, 310
HpyCH4III ACNGT 2 cut(s) 113, 268
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 6 cut(s) 83, 154, 254, 410, 452, 521
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 77
HpyF3I CTNAG 2 cut(s) 443, 570
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 2 cut(s) 394, 632
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 145, 337, 560, 643
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 2 cut(s) 35, 67
LweI GCATC 3 cut(s) 427, 490, 579
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 472
MalI GATC 4 cut(s) 147, 339, 562, 645
MboI GATC 4 cut(s) 145, 337, 560, 643
MboII GAAGA 2 cut(s) 598, 610
MflI RGATCY 2 cut(s) 337, 560
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 2 cut(s) 133, 349
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 4 cut(s) 198, 265, 322, 351
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 490
MspR9I CCNGG 2 cut(s) 386, 426
MvaI CCWGG 2 cut(s) 386, 426
MwoI GCNNNNNNNGC 2 cut(s) 57, 77
NdeII GATC 4 cut(s) 145, 337, 560, 643
NlaIII CATG 2 cut(s) 394, 632
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 472
NspI RCATGY 1 cut(s) 632
PfeI GAWTC 3 cut(s) 119, 190, 546
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 2 cut(s) 50, 82
Ppu21I YACGTR 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 2 cut(s) 384, 424
PspGI CCWGG 2 cut(s) 384, 424
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 382, 566
PsuI RGATCY 2 cut(s) 337, 560
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SacI GAGCTC 1 cut(s) 62
SatI GCNGC 2 cut(s) 49, 81
Sau3AI GATC 4 cut(s) 145, 337, 560, 643
Sau96I GGNCC 2 cut(s) 382, 566
ScrFI CCNGG 2 cut(s) 386, 426
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 3 cut(s) 427, 490, 579
SinI GGWCC 2 cut(s) 382, 566
Sse9I AATT 2 cut(s) 133, 349
SsiI CCGC 1 cut(s) 51
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 2 cut(s) 384, 424
TaaI ACNGT 2 cut(s) 113, 268
TaiI ACGT 1 cut(s) 159
TaqI TCGA 3 cut(s) 27, 117, 458
TasI AATT 2 cut(s) 133, 349
TfiI GAWTC 3 cut(s) 119, 190, 546
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 2 cut(s) 48, 80
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 382, 566
XceI RCATGY 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.