RLG00000028102

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000506
Physical Location & Seq
Reverse (-)
18729095 .. 18730863
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028102

Sequence Viewer

Length: 807 bp
ATGGGGGATTTGTACGCTTTGGATTTCGATGGAGTTATCTGTGATAGCTGCGGAGAGAGCTCCGTCTCTGCTGTGAAGGCTGCTAAAGTGCGATGGCCAGCTCTGTTCAAGGGTGTTGATTCGGCTTTAGAGAATTGGGTTGTTGATCAAATGCACGTAGTGAGACCTGTGGTGGAAACTGGGTATGAGAATCTTTTGCTTGTGAGGTTACTTCTGGAGATGAGAATTCGTTCTATAAGAAAGTCCTCAGTTGCAGAAGGGCTTACAGTTGAGGGGATATTGGAGAAGTGGTCAGCATTGAAGCCTGTGATTATGGAGGAATGGGGTGAGGAGAGGGATCCTCTTGTAAATCTGTTTGGAAAGATCAGGGATGAGTGGATGGACCAGGACTTGACTACTTGGATTGGTGCAAATAGATTATATCCAGGTGTATCTGATGCTCTAAGATTTGCAAGCTCGACAATATATATAGTCACCACAAAGCAGAGCCGATTTGCTGATGCTTTACTGCGAGAACTTGCAGGAGTTACAATACCACCTGAAAGAATCTTTGGTCTTGGATCTGGTCCTAAGGTAGAAGTATTGAAGATGCTTCAGAAGAAACCAGAACATCAAGGGCTGAAACTGCACTTTGTGGAAGATAGACTGGCAACCCTAAAGAATGTTATCAAAGAACCTGAATTGGATGGTTGGAGCTTGTATCTAGGGGATTGGGGGTACAATACAGAGGAAGAGAGATATGAAGCTGCTAGAATTTCCAGGATTCAGATTCTTCAGCTTTCTGACTTCAGCACAAAGTTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

269

Amino Acids

30.36

Weight (kDa)

5.33

Isoelectric Point (pI)

32.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AclWI GGATC 3 cut(s) 332, 345, 568
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 2 cut(s) 225, 753
AcuI CTGAAG 3 cut(s) 578, 758, 772
AdeI CACNNNGTG 2 cut(s) 160, 634
AfaI GTAC 2 cut(s) 14, 719
AgsI TTSAA 4 cut(s) 109, 301, 586, 802
AjnI CCWGG 3 cut(s) 384, 424, 758
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 48, 60, 101, 456, 696, 746, 778
AluI AGCT 7 cut(s) 48, 60, 101, 456, 696, 746, 778
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 70, 157
AlwI GGATC 3 cut(s) 332, 345, 568
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 48, 80, 746
ApoI RAATTY 2 cut(s) 225, 753
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 382, 566
AsuHPI GGTGA 2 cut(s) 338, 466
AvaII GGWCC 2 cut(s) 382, 566
AxyI CCTNAGG 1 cut(s) 570
BalI TGGCCA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 3 cut(s) 35, 67, 733
BccI CCATC 4 cut(s) 23, 87, 373, 680
BciT130I CCWGG 3 cut(s) 386, 426, 760
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 70, 157
BfaI CTAG 2 cut(s) 704, 750
BisI GCNGC 3 cut(s) 49, 81, 747
BlsI GCNGC 3 cut(s) 50, 82, 748
Bme1390I CCNGG 3 cut(s) 386, 426, 760
Bme18I GGWCC 2 cut(s) 382, 566
BmgT120I GGNCC 2 cut(s) 382, 566
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 3 cut(s) 386, 426, 760
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 3 cut(s) 427, 490, 579
BmuI ACTGGG 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 325, 357
BpmI CTGGAG 1 cut(s) 236
BsaAI YACGTR 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 2 cut(s) 184, 651
Bse21I CCTNAGG 1 cut(s) 570
BseBI CCWGG 3 cut(s) 386, 426, 760
BseGI GGATG 3 cut(s) 376, 384, 691
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 2 cut(s) 184, 651
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 35, 67, 733
BsgI GTGCAG 1 cut(s) 611
BshFI GGCC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 62
BsmAI GTCTC 2 cut(s) 70, 157
BsmBI CGTCTC 1 cut(s) 70
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 4 cut(s) 145, 337, 363, 560
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 3 cut(s) 332, 345, 568
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 184, 651
BssMI GATC 4 cut(s) 145, 337, 363, 560
Bst2UI CCWGG 3 cut(s) 386, 426, 760
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 726
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 99, 454
BstDEI CTNAG 3 cut(s) 247, 443, 570
BstF5I GGATG 3 cut(s) 376, 384, 691
BstKTI GATC 4 cut(s) 148, 340, 366, 563
BstMAI GTCTC 2 cut(s) 70, 157
BstMBI GATC 4 cut(s) 145, 337, 363, 560
BstMWI GCNNNNNNNGC 3 cut(s) 57, 77, 625
BstNI CCWGG 3 cut(s) 386, 426, 760
BstSCI CCNGG 3 cut(s) 384, 424, 758
BstV1I GCAGC 3 cut(s) 35, 67, 733
BstX2I RGATCY 2 cut(s) 337, 560
BstYI RGATCY 2 cut(s) 337, 560
Bsu36I CCTNAGG 1 cut(s) 570
BsuRI GGCC 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 3 cut(s) 376, 384, 691
Cac8I GCNNGC 2 cut(s) 99, 454
Cfr13I GGNCC 2 cut(s) 382, 566
Csp6I GTAC 2 cut(s) 13, 718
CviQI GTAC 2 cut(s) 13, 718
DdeI CTNAG 3 cut(s) 247, 443, 570
DpnI GATC 4 cut(s) 147, 339, 365, 562
DpnII GATC 4 cut(s) 145, 337, 363, 560
DraIII CACNNNGTG 2 cut(s) 160, 634
EaeI YGGCCR 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 726
EarI CTCTTC 1 cut(s) 726
Ecl136II GAGCTC 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 382, 566
Eco53kI GAGCTC 1 cut(s) 60
Eco57I CTGAAG 3 cut(s) 578, 758, 772
Eco81I CCTNAGG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 60
EcoRI GAATTC 1 cut(s) 225
EcoRII CCWGG 3 cut(s) 384, 424, 758
EcoT38I GRGCYC 1 cut(s) 62
Esp3I CGTCTC 1 cut(s) 70
FaiI YATR 8 cut(s) 186, 236, 314, 421, 466, 468, 470, 741
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 3 cut(s) 49, 81, 747
FokI GGATG 3 cut(s) 383, 391, 698
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 49, 81, 747
FspBI CTAG 2 cut(s) 704, 750
GluI GCNGC 3 cut(s) 49, 81, 747
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 97
HinfI GANTC 5 cut(s) 119, 190, 546, 763, 769
HphI GGTGA 2 cut(s) 338, 466
Hpy188I TCNGA 4 cut(s) 436, 597, 768, 784
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 70, 251
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 6 cut(s) 154, 254, 410, 452, 521, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 77, 625
HpyF3I CTNAG 3 cut(s) 247, 443, 570
HpySE526I ACGT 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 4 cut(s) 145, 337, 363, 560
LmnI GCTCC 2 cut(s) 65, 693
Lsp1109I GCAGC 3 cut(s) 35, 67, 733
LweI GCATC 3 cut(s) 427, 490, 579
MaeI CTAG 2 cut(s) 704, 750
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 207, 472, 526
MalI GATC 4 cut(s) 147, 339, 365, 562
MboI GATC 4 cut(s) 145, 337, 363, 560
MboII GAAGA 5 cut(s) 598, 610, 650, 743, 764
MflI RGATCY 2 cut(s) 337, 560
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 4 cut(s) 133, 225, 680, 753
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 671
MnlI CCTC 8 cut(s) 198, 256, 265, 310, 322, 327, 351, 721
Mox20I TGGCCA 1 cut(s) 97
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 3 cut(s) 386, 426, 760
MvaI CCWGG 3 cut(s) 386, 426, 760
MwoI GCNNNNNNNGC 3 cut(s) 57, 77, 625
NdeII GATC 4 cut(s) 145, 337, 363, 560
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 5 cut(s) 119, 190, 546, 763, 769
PfoI TCCNGGA 1 cut(s) 758
PkrI GCNGC 3 cut(s) 50, 82, 748
Ppu21I YACGTR 1 cut(s) 157
Psp124BI GAGCTC 1 cut(s) 62
Psp6I CCWGG 3 cut(s) 384, 424, 758
PspGI CCWGG 3 cut(s) 384, 424, 758
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 2 cut(s) 382, 566
PsuI RGATCY 2 cut(s) 337, 560
RsaI GTAC 2 cut(s) 14, 719
RsaNI GTAC 2 cut(s) 13, 718
SacI GAGCTC 1 cut(s) 62
SatI GCNGC 3 cut(s) 49, 81, 747
Sau3AI GATC 4 cut(s) 145, 337, 363, 560
Sau96I GGNCC 2 cut(s) 382, 566
ScrFI CCNGG 3 cut(s) 386, 426, 760
SduI GDGCHC 1 cut(s) 62
SfaNI GCATC 3 cut(s) 427, 490, 579
SinI GGWCC 2 cut(s) 382, 566
Sse9I AATT 4 cut(s) 133, 225, 680, 753
SsiI CCGC 1 cut(s) 51
SspMI CTAG 2 cut(s) 704, 750
SstI GAGCTC 1 cut(s) 62
StyD4I CCNGG 3 cut(s) 384, 424, 758
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 27, 458
TasI AATT 4 cut(s) 133, 225, 680, 753
TfiI GAWTC 5 cut(s) 119, 190, 546, 763, 769
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 3 cut(s) 48, 80, 746
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 1 cut(s) 756
TspGWI ACGGA 1 cut(s) 52
VpaK11BI GGWCC 2 cut(s) 382, 566
XapI RAATTY 2 cut(s) 225, 753
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 2 cut(s) 704, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.