Rroxscaffold_4G00299820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000506
Physical Location & Seq
Reverse (-)
19759869 .. 19763047
3179 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299820.1

Sequence Viewer

Length: 831 bp
ATGGGGGATTTGTACACTTTGGATTTCGACGGAGTTCTGTGCGATAGCTGCGGAGAGAGCTATGCCTTTGCTGCCAAGGCTGCTAAAGTGATATGGCCAACGCTATTCAACGATGTGGATTCAAGTTTAGAGGATTGGCTTGTCGATCAAATCCGCACAGTGAGACCTGTGCTGCAAAAGCGGTATGACAATCTTCTACTTGTGAGGTTACTTTTGGAGATGAGGCTTCCTTCTATAAGGAAGTTATCAGTTGCAGAAGGGCTCACGGTGGAAGGGATAGTGGAGAATTGGTCAGAGTTGAGGAATCTGATTTTGAAGGAATGGGGTGAGGATAAGGATGCTCTTGTAAATTTATATGGAAAGGTCAGGGATGAGTGGAGGGTTCAGGACTTGAAAAGTTGGATCGGTGTAAATAGGAGTGGCTTTGATTGCAGATTGTATCCAGGTGTTGCTGATGCTCTTAAATCGGCAACCTCAACCATTTACATTGTCACTGGGAAACAGAGCCCATTTGCTGAGGTAATACTACAAGAATTTGCAAAAGATACAATACCGCCTGAAAGAATATTTGGTGTTGGAGCTGGTTCCGAACCTAAGCTAGAAAAACTGAAGCAACTTCAAAAGAAACCAGAACATCAAGGGCTGAAGCTGCACTTTGTGGAGGATAGATTGGCAACTCTGAAGAAAGTTATCAAAGAACCTGAATTGGATGGCTGGAATTTGTATCTAAGTGGTTGGGGGTACAATACACAGAAAGAGAAAGACGAAGCTGCTACGATTCCTAGGATTCAGATTCTTCAACTTTCTGACTTCAATACCAAGCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.43

Weight (kDa)

5.66

Isoelectric Point (pI)

30.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 51, 154, 181, 554
AclWI GGATC 1 cut(s) 410
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 3 cut(s) 349, 533, 718
AcuI CTGAAG 3 cut(s) 629, 665, 701
AdeI CACNNNGTG 1 cut(s) 658
AfaI GTAC 2 cut(s) 14, 743
AgsI TTSAA 7 cut(s) 109, 123, 316, 394, 620, 800, 814
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 552, 584
AluBI AGCT 7 cut(s) 48, 60, 581, 598, 649, 770, 823
AluI AGCT 7 cut(s) 48, 60, 581, 598, 649, 770, 823
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 1 cut(s) 410
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 6 cut(s) 48, 71, 80, 172, 649, 770
ApoI RAATTY 3 cut(s) 349, 533, 718
AspA2I CCTAGG 1 cut(s) 782
AsuHPI GGTGA 1 cut(s) 338
AvrII CCTAGG 1 cut(s) 782
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 2 cut(s) 264, 509
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 6 cut(s) 35, 58, 67, 159, 636, 757
BccI CCATC 1 cut(s) 704
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 599, 783
BfuI GTATCC 1 cut(s) 450
BisI GCNGC 6 cut(s) 49, 72, 81, 173, 650, 771
BlnI CCTAGG 1 cut(s) 782
BlsI GCNGC 6 cut(s) 50, 73, 82, 174, 651, 772
Bme1390I CCNGG 1 cut(s) 444
BmiI GGNNCC 1 cut(s) 586
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 504
BmsI GCATC 2 cut(s) 328, 445
BmuI ACTGGG 1 cut(s) 504
Bpu10I CCTNAGC 2 cut(s) 516, 594
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 75, 782
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse1I ACTGG 1 cut(s) 499
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 75, 782
BseGI GGATG 3 cut(s) 343, 376, 715
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 499
BseXI GCAGC 6 cut(s) 35, 58, 67, 159, 636, 757
BsgI GTGCAG 1 cut(s) 635
BshFI GGCC 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 264, 509
Bsp1407I TGTACA 1 cut(s) 12
Bsp143I GATC 2 cut(s) 145, 402
BspACI CCGC 4 cut(s) 51, 154, 181, 554
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 586
BspPI GGATC 1 cut(s) 410
BspTNI GGTCTC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 12
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 2 cut(s) 75, 782
BssMI GATC 2 cut(s) 145, 402
BssT1I CCWWGG 2 cut(s) 75, 782
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 2 cut(s) 160, 268
BstAUI TGTACA 1 cut(s) 12
BstDEI CTNAG 3 cut(s) 516, 594, 728
BstF5I GGATG 3 cut(s) 343, 376, 715
BstKTI GATC 2 cut(s) 148, 405
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 145, 402
BstMWI GCNNNNNNNGC 8 cut(s) 48, 57, 71, 77, 80, 178, 429, 649
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstV1I GCAGC 6 cut(s) 35, 58, 67, 159, 636, 757
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 3 cut(s) 343, 376, 715
BtsIMutI CAGTG 2 cut(s) 165, 492
Csp6I GTAC 2 cut(s) 13, 742
CviQI GTAC 2 cut(s) 13, 742
DdeI CTNAG 3 cut(s) 516, 594, 728
DpnI GATC 2 cut(s) 147, 404
DpnII GATC 2 cut(s) 145, 402
DraIII CACNNNGTG 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 75, 782
Eco24I GRGCYC 2 cut(s) 264, 509
Eco31I GGTCTC 1 cut(s) 157
Eco57I CTGAAG 3 cut(s) 629, 665, 701
EcoRII CCWGG 1 cut(s) 442
EcoT14I CCWWGG 2 cut(s) 75, 782
EcoT38I GRGCYC 2 cut(s) 264, 509
ErhI CCWWGG 2 cut(s) 75, 782
FaiI YATR 6 cut(s) 63, 94, 186, 236, 355, 357
FalI AAGNNNNNCTT 2 cut(s) 638, 670
Fnu4HI GCNGC 6 cut(s) 49, 72, 81, 173, 650, 771
FokI GGATG 3 cut(s) 350, 383, 722
FriOI GRGCYC 2 cut(s) 264, 509
Fsp4HI GCNGC 6 cut(s) 49, 72, 81, 173, 650, 771
FspBI CTAG 2 cut(s) 599, 783
GluI GCNGC 6 cut(s) 49, 72, 81, 173, 650, 771
HaeIII GGCC 1 cut(s) 97
HinfI GANTC 5 cut(s) 119, 304, 778, 787, 793
HphI GGTGA 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 6 cut(s) 295, 309, 589, 681, 792, 808
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 240, 251, 266, 310
HpyCH4III ACNGT 2 cut(s) 160, 268
HpyCH4V TGCA 5 cut(s) 175, 254, 432, 539, 652
HpyF10VI GCNNNNNNNGC 8 cut(s) 48, 57, 71, 77, 80, 178, 429, 649
HpyF3I CTNAG 3 cut(s) 516, 594, 728
Kzo9I GATC 2 cut(s) 145, 402
LmnI GCTCC 1 cut(s) 578
Lsp1109I GCAGC 6 cut(s) 35, 58, 67, 159, 636, 757
LweI GCATC 2 cut(s) 328, 445
MaeI CTAG 2 cut(s) 599, 783
MaeIII GTNAC 2 cut(s) 207, 490
MalI GATC 2 cut(s) 147, 404
MboI GATC 2 cut(s) 145, 402
MboII GAAGA 3 cut(s) 185, 694, 788
MhlI GDGCHC 2 cut(s) 264, 509
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 5 cut(s) 286, 349, 533, 704, 718
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 380, 556
MnlI CCTC 9 cut(s) 124, 198, 216, 294, 322, 372, 484, 511, 655
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 462
Msp20I TGGCCA 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 8 cut(s) 48, 57, 71, 77, 80, 178, 429, 649
NdeII GATC 2 cut(s) 145, 402
NlaIV GGNNCC 1 cut(s) 586
NmuCI GTSAC 1 cut(s) 490
PfeI GAWTC 5 cut(s) 119, 304, 778, 787, 793
PkrI GCNGC 6 cut(s) 50, 73, 82, 174, 651, 772
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 586
RsaI GTAC 2 cut(s) 14, 743
RsaNI GTAC 2 cut(s) 13, 742
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 6 cut(s) 49, 72, 81, 173, 650, 771
Sau3AI GATC 2 cut(s) 145, 402
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 2 cut(s) 264, 509
SfaNI GCATC 2 cut(s) 328, 445
Sse9I AATT 5 cut(s) 286, 349, 533, 704, 718
SsiI CCGC 4 cut(s) 51, 154, 181, 554
SspI AATATT 1 cut(s) 567
SspMI CTAG 2 cut(s) 599, 783
StyD4I CCNGG 1 cut(s) 442
StyI CCWWGG 2 cut(s) 75, 782
TaaI ACNGT 2 cut(s) 160, 268
TaqI TCGA 2 cut(s) 27, 144
TasI AATT 5 cut(s) 286, 349, 533, 704, 718
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 5 cut(s) 119, 304, 778, 787, 793
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 2 cut(s) 165, 499
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 6 cut(s) 48, 71, 80, 172, 649, 770
Tsp45I GTSAC 1 cut(s) 490
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 165, 499
XapI RAATTY 3 cut(s) 349, 533, 718
XmaJI CCTAGG 1 cut(s) 782
XspI CTAG 2 cut(s) 599, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.