FvH4_7g14540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000506
Physical Location & Seq
Forward (+)
12836738 .. 12845911
9174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14540.t5

Sequence Viewer

Length: 828 bp
ATGGGGGATTTGTACGCTTTGGATTTCGACGGTGTTCTGTCTGATAGCTGCGGAGAGAGCTATGCCTCTGCTGCCAGGGCTATTAAAGTGAGATGGCCAACGCTGTTCAACCATGTCGATTCAAGTTTAGAGGATTGGATTGTTGATCAAATTCGCATAGTGAGACCTGTAATGCAAACTCGGTATGAGACTATTCTACTTGTGAGGTTACTTTTGGAGATGAGGGTTCCTTCTATAAGGAAGTCATCAGTTGCAGAAGGGCTCACGGTGGAGGGGATAGTGGAGAATTGGTCAGAGTTGAAGAATCTGATCTTGAAGGAATGGGGTGAGGATAAGGATTCTCTTGTAAATTTATATGGAAAGGTCAGGGATGAGTGGAAGGACCAGGACTTGGGAACTTGGATTGGTGCAAATAGATTGTATCCAGGTGTTGTTGATGCTCTTAAATCGGCAACCTCAACCATCTACATTGTCACTGGGAAACAGAGCCGATTTGCTGAGGTAATACTGCGAGAACTTGCAGGAGTTACAATACCACCTGAAAGAATATTTGGTGTTGGATCCGGTTCCGAACGCAAGCTAGAAGTAATGAAGCAGCTTCAGAAGAAACCAGAACATCAAGGACTGAAGCTGCACTTTGTGGAGGATAGATTGGCAACCCTGAAGAAAGTTACTGAAGAACCCGAATTGGTTGGTTGGAATTTGTATCTGGGCGACTGGGGGTACAATACACAGAAAGAGAGAGACGAAGTTGCTACAATTCCCAGGATTCAGATTCTTCAGCTTTCTGAATTCAATGACAAGTTGAAGTATAGCTTCTGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

31.38

Weight (kDa)

5.47

Isoelectric Point (pI)

25.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 391
AciI CCGC 1 cut(s) 51
AclWI GGATC 2 cut(s) 555, 568
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 4 cut(s) 150, 349, 700, 791
AcuI CTGAAG 5 cut(s) 584, 647, 683, 696, 764
AdeI CACNNNGTG 1 cut(s) 640
AfaI GTAC 2 cut(s) 14, 725
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 6 cut(s) 109, 123, 301, 316, 796, 808
AjnI CCWGG 4 cut(s) 74, 384, 424, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 534, 566
AluBI AGCT 7 cut(s) 48, 60, 580, 598, 631, 784, 816
AluI AGCT 7 cut(s) 48, 60, 580, 598, 631, 784, 816
Alw26I GTCTC 3 cut(s) 157, 182, 738
AlwI GGATC 2 cut(s) 555, 568
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 48, 71, 595, 631
ApoI RAATTY 4 cut(s) 150, 349, 700, 791
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 97
BamHI GGATCC 1 cut(s) 560
BanII GRGCYC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 4 cut(s) 35, 58, 607, 618
BccI CCATC 2 cut(s) 87, 470
BciT130I CCWGG 4 cut(s) 76, 386, 426, 766
BciVI GTATCC 1 cut(s) 432
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 3 cut(s) 157, 182, 738
BfaI CTAG 1 cut(s) 581
BfuI GTATCC 1 cut(s) 432
BisI GCNGC 4 cut(s) 49, 72, 596, 632
BlsI GCNGC 4 cut(s) 50, 73, 597, 633
Bme1390I CCNGG 4 cut(s) 76, 386, 426, 766
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 3 cut(s) 228, 562, 568
BmrFI CCNGG 4 cut(s) 76, 386, 426, 766
BmrI ACTGGG 2 cut(s) 486, 727
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 2 cut(s) 486, 727
Bpu10I CCTNAGC 1 cut(s) 498
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 75, 764
BsaWI WCCGGW 1 cut(s) 563
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 481, 722
BseBI CCWGG 4 cut(s) 76, 386, 426, 766
BseDI CCNNGG 2 cut(s) 75, 764
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 2 cut(s) 481, 722
BseXI GCAGC 4 cut(s) 35, 58, 607, 618
BsgI GTGCAG 1 cut(s) 617
BshFI GGCC 1 cut(s) 97
BsiSI CCGG 1 cut(s) 564
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 3 cut(s) 157, 182, 738
BsmBI CGTCTC 1 cut(s) 738
BsnI GGCC 1 cut(s) 97
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 145, 309, 560
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 97
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 228, 562, 568
BspPI GGATC 2 cut(s) 555, 568
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 481, 722
BssECI CCNNGG 2 cut(s) 75, 764
BssMI GATC 3 cut(s) 145, 309, 560
Bst2UI CCWGG 4 cut(s) 76, 386, 426, 766
Bst4CI ACNGT 2 cut(s) 32, 268
BstC8I GCNNGC 1 cut(s) 578
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 3 cut(s) 148, 312, 563
BstMAI GTCTC 3 cut(s) 157, 182, 738
BstMBI GATC 3 cut(s) 145, 309, 560
BstMWI GCNNNNNNNGC 3 cut(s) 57, 71, 77
BstNI CCWGG 4 cut(s) 76, 386, 426, 766
BstSCI CCNGG 4 cut(s) 74, 384, 424, 764
BstV1I GCAGC 4 cut(s) 35, 58, 607, 618
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 474
Cac8I GCNNGC 1 cut(s) 578
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 13, 724
CviAII CATG 1 cut(s) 113
CviQI GTAC 2 cut(s) 13, 724
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 147, 311, 562
DpnII GATC 3 cut(s) 145, 309, 560
DraIII CACNNNGTG 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 5 cut(s) 584, 647, 683, 696, 764
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 4 cut(s) 74, 384, 424, 764
EcoT38I GRGCYC 1 cut(s) 264
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 1 cut(s) 116
FaiI YATR 9 cut(s) 63, 114, 158, 186, 236, 355, 357, 813, 826
FalI AAGNNNNNCTT 3 cut(s) 620, 652, 800
FatI CATG 1 cut(s) 112
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 49, 72, 596, 632
FokI GGATG 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 4 cut(s) 49, 72, 596, 632
FspBI CTAG 1 cut(s) 581
GluI GCNGC 4 cut(s) 49, 72, 596, 632
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 564
Hin1II CATG 1 cut(s) 116
HinfI GANTC 5 cut(s) 119, 304, 338, 769, 775
HpaII CCGG 1 cut(s) 564
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 7 cut(s) 43, 295, 309, 571, 603, 774, 790
Hpy188III TCNNGA 1 cut(s) 313
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 4 cut(s) 240, 251, 310, 373
HpyCH4III ACNGT 2 cut(s) 32, 268
HpyCH4V TGCA 5 cut(s) 175, 254, 410, 521, 634
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 71, 77
HpyF3I CTNAG 1 cut(s) 498
Hsp92II CATG 1 cut(s) 116
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 145, 309, 560
Lsp1109I GCAGC 4 cut(s) 35, 58, 607, 618
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 4 cut(s) 207, 472, 526, 670
MalI GATC 3 cut(s) 147, 311, 562
MboI GATC 3 cut(s) 145, 309, 560
MboII GAAGA 5 cut(s) 313, 616, 676, 689, 770
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 7 cut(s) 150, 286, 349, 686, 700, 759, 791
MluNI TGGCCA 1 cut(s) 97
MmeI TCCRAC 2 cut(s) 538, 677
MnlI CCTC 9 cut(s) 76, 124, 198, 216, 265, 322, 466, 493, 637
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 2 cut(s) 84, 444
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 564
MspR9I CCNGG 4 cut(s) 76, 386, 426, 766
MvaI CCWGG 4 cut(s) 76, 386, 426, 766
MwoI GCNNNNNNNGC 3 cut(s) 57, 71, 77
NdeII GATC 3 cut(s) 145, 309, 560
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 228, 562, 568
NmuCI GTSAC 1 cut(s) 472
PfeI GAWTC 5 cut(s) 119, 304, 338, 769, 775
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 4 cut(s) 50, 73, 597, 633
Psp6I CCWGG 4 cut(s) 74, 384, 424, 764
PspGI CCWGG 4 cut(s) 74, 384, 424, 764
PspN4I GGNNCC 3 cut(s) 228, 562, 568
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 2 cut(s) 14, 725
RsaNI GTAC 2 cut(s) 13, 724
SaqAI TTAA 2 cut(s) 84, 444
SatI GCNGC 4 cut(s) 49, 72, 596, 632
Sau3AI GATC 3 cut(s) 145, 309, 560
Sau96I GGNCC 1 cut(s) 382
ScrFI CCNGG 4 cut(s) 76, 386, 426, 766
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 1 cut(s) 382
Sse9I AATT 7 cut(s) 150, 286, 349, 686, 700, 759, 791
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 549
SspMI CTAG 1 cut(s) 581
StyD4I CCNGG 4 cut(s) 74, 384, 424, 764
TaaI ACNGT 2 cut(s) 32, 268
TaqI TCGA 2 cut(s) 27, 117
TasI AATT 7 cut(s) 150, 286, 349, 686, 700, 759, 791
TfiI GAWTC 5 cut(s) 119, 304, 338, 769, 775
Tru1I TTAA 2 cut(s) 84, 444
Tru9I TTAA 2 cut(s) 84, 444
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 48, 71, 595, 631
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 2 cut(s) 605, 813
TspRI CASTG 1 cut(s) 481
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 4 cut(s) 150, 349, 700, 791
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.