Rmu_sc0007127.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007127.1
OG0000506
Physical Location & Seq
Forward (+)
21166 .. 22148
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007127.1_g000007.1.cds

Sequence Viewer

Length: 420 bp
atgggggatttgtacgctttggatttcgacggagttctgtgcgatagctgcggagagagctatgccactgctgccaaggctgctaaagtgatatggccaacgctattcaacgatgtggattcaagtttagaggattgggttgttgatcaaatccgcatcgtgcgacctgtgctgcaaaaccggtatgacaatcttctacttgtgaggttacttttggaaatgaggattccttctataaggaagtcatcagttgcagaagggctcacggtggaagggatagtggagaattggttagggttgaagaatctgattttgaaggaatggggtgaggataaggatgctcttgtaaaattatatttccaggtcaggaatgagtggaaggttcaggacttgaaaacttggattggtgcaaataggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.91

Weight (kDa)

4.88

Isoelectric Point (pI)

22.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 51, 154
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 1 cut(s) 14
AgeI ACCGGT 1 cut(s) 180
AgsI TTSAA 5 cut(s) 109, 123, 301, 316, 394
AjnI CCWGG 1 cut(s) 360
AluBI AGCT 2 cut(s) 48, 60
AluI AGCT 2 cut(s) 48, 60
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 4 cut(s) 48, 71, 80, 172
AsiGI ACCGGT 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 338
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 35, 58, 67, 159
BciT130I CCWGG 1 cut(s) 362
BclI TGATCA 1 cut(s) 145
BisI GCNGC 4 cut(s) 49, 72, 81, 173
BlsI GCNGC 4 cut(s) 50, 73, 82, 174
Bme1390I CCNGG 1 cut(s) 362
BmrFI CCNGG 1 cut(s) 362
BmsI GCATC 2 cut(s) 165, 328
BsaJI CCNNGG 1 cut(s) 75
BsaWI WCCGGW 1 cut(s) 180
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bse118I RCCGGY 1 cut(s) 180
BseBI CCWGG 1 cut(s) 362
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 1 cut(s) 343
BseXI GCAGC 4 cut(s) 35, 58, 67, 159
BshFI GGCC 1 cut(s) 97
BshTI ACCGGT 1 cut(s) 180
BsiSI CCGG 1 cut(s) 181
BsnI GGCC 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 145
BspACI CCGC 2 cut(s) 51, 154
BspANI GGCC 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 362
Bst4CI ACNGT 1 cut(s) 268
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 148
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 169
BstNI CCWGG 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 360
BstV1I GCAGC 4 cut(s) 35, 58, 67, 159
BsuRI GGCC 1 cut(s) 97
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 1 cut(s) 13
CspAI ACCGGT 1 cut(s) 180
CviJI RGCY 5 cut(s) 48, 60, 80, 97, 262
CviKI_1 RGCY 5 cut(s) 48, 60, 80, 97, 262
CviQI GTAC 1 cut(s) 13
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 75
FaiI YATR 5 cut(s) 63, 94, 186, 236, 355
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 4 cut(s) 49, 72, 81, 173
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 4 cut(s) 49, 72, 81, 173
GluI GCNGC 4 cut(s) 49, 72, 81, 173
HaeIII GGCC 1 cut(s) 97
HapII CCGG 1 cut(s) 181
HinfI GANTC 3 cut(s) 119, 226, 304
HpaII CCGG 1 cut(s) 181
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 309
Hpy188III TCNNGA 2 cut(s) 367, 386
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 5 cut(s) 240, 251, 266, 310, 373
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 175, 254, 410
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 169
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 1 cut(s) 145
LpnPI CCDG 6 cut(s) 180, 194, 347, 352, 371, 374
Lsp1109I GCAGC 4 cut(s) 35, 58, 67, 159
LweI GCATC 2 cut(s) 165, 328
MaeIII GTNAC 1 cut(s) 207
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 2 cut(s) 185, 313
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 2 cut(s) 286, 350
MluNI TGGCCA 1 cut(s) 97
MnlI CCTC 4 cut(s) 124, 198, 216, 322
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 181
MspR9I CCNGG 1 cut(s) 362
MvaI CCWGG 1 cut(s) 362
MwoI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 169
NdeII GATC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 119, 226, 304
PinAI ACCGGT 1 cut(s) 180
PkrI GCNGC 4 cut(s) 50, 73, 82, 174
Psp6I CCWGG 1 cut(s) 360
PspGI CCWGG 1 cut(s) 360
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 4 cut(s) 49, 72, 81, 173
Sau3AI GATC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 362
SduI GDGCHC 1 cut(s) 264
SetI ASST 7 cut(s) 50, 62, 169, 209, 366, 384, 419
SfaNI GCATC 2 cut(s) 165, 328
Sse9I AATT 2 cut(s) 286, 350
SsiI CCGC 2 cut(s) 51, 154
StyD4I CCNGG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 1 cut(s) 27
TasI AATT 2 cut(s) 286, 350
TfiI GAWTC 3 cut(s) 119, 226, 304
TscAI CASTG 1 cut(s) 73
TseI GCWGC 4 cut(s) 48, 71, 80, 172
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.