Rroxscaffold_4G00299890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000506
Physical Location & Seq
Reverse (-)
19806012 .. 19808087
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00299890.1

Sequence Viewer

Length: 813 bp
ATGGGGGATTTGTACGCTTTGGATTTCGATGGGGTTCTGTGCGATAGCTGCGGCGAGAGCTACGCCTCTGCTGCCAAGGCTGCTAAAGTGAGATGGCCAAAGCTGTTCTGTGATGTGGATTCAAGTTTGAAGGATTGGATGGTTGATCAGATCGGCATCGTGAGACCTGTGCTGCAATCTCGGTATGAGAATCTGATACTTGTGAGGCTACTTCTGGAGATGAGGGTTCCTTCTATAAGGGAGTCATCAGTTGCGGAAGGGCTCACAGTGGAGGGGATAGTGGAAAATTGGTCAGAGTTGAAGAGTCTGATTCTGAAGGAATGGGGTGAGGATAAGGATGCTCTTGTAAATGTATTTGGAAAGGTCAGGGATGAGTGGAAGGACCAGGACCTGGAAACTTGGACTGGTGCAAATAGATTGTACCCAGGTGTTGCTGATGCTCTTACATTGGCAACCTCAACAATTTATATTGTCACTGGGAAACAGAGCCGATTTGCTGAGGTAATACTGAAAAAACTTGCAGAAGTTACACTACCACCTGGAAGAATATTTGGAGATGGATCTCGTTCCGGCCGCAAGATAGAAGTACTGAAGCAGCTTCAAGAGAAACCAGAACATCGAGGGCTGAAGCTGCACTTTGTGGAGGATAGACTAGCAACCCTGAAGGAAGTTATTGAAGTACCCGAATTGGATGGTTGGAATTTGTATCTGGGCGGTTGGGGGTACAATACACAGAAAGAGAGAGACGAAGCTGCTACAATTCCTAGAATTCAGATTCTTCAGCTTTCGGACTTCAGTAACAAGCTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

30.48

Weight (kDa)

5.25

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 391
AciI CCGC 4 cut(s) 51, 254, 574, 714
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 2 cut(s) 95, 571
AcsI RAATTY 2 cut(s) 700, 768
AcuI CTGAAG 6 cut(s) 335, 611, 647, 683, 764, 778
AdeI CACNNNGTG 1 cut(s) 640
AfaI GTAC 5 cut(s) 14, 422, 588, 681, 725
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 5 cut(s) 123, 130, 301, 602, 677
AjnI CCWGG 4 cut(s) 384, 390, 424, 538
AluBI AGCT 8 cut(s) 48, 60, 103, 598, 631, 752, 784, 805
AluI AGCT 8 cut(s) 48, 60, 103, 598, 631, 752, 784, 805
Alw26I GTCTC 2 cut(s) 157, 738
AlwI GGATC 1 cut(s) 568
AlwNI CAGNNNCTG 1 cut(s) 391
AoxI GGCC 2 cut(s) 95, 571
ApeKI GCWGC 7 cut(s) 48, 71, 80, 172, 595, 631, 752
ApoI RAATTY 2 cut(s) 700, 768
AspS9I GGNCC 2 cut(s) 382, 388
AsuHPI GGTGA 1 cut(s) 338
AvaII GGWCC 2 cut(s) 382, 388
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 264
BarI GAAGNNNNNNTAC 2 cut(s) 516, 548
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 7 cut(s) 35, 58, 67, 159, 607, 618, 739
BccI CCATC 5 cut(s) 23, 87, 133, 551, 686
BciT130I CCWGG 4 cut(s) 386, 392, 426, 540
BclI TGATCA 1 cut(s) 145
BcoDI GTCTC 2 cut(s) 157, 738
BfaI CTAG 2 cut(s) 653, 765
BisI GCNGC 9 cut(s) 49, 52, 72, 81, 173, 574, 596, 632, 753
BlsI GCNGC 9 cut(s) 50, 53, 73, 82, 174, 575, 597, 633, 754
BmcAI AGTACT 1 cut(s) 588
Bme1390I CCNGG 4 cut(s) 386, 392, 426, 540
Bme18I GGWCC 2 cut(s) 382, 388
BmgT120I GGNCC 2 cut(s) 382, 388
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 4 cut(s) 386, 392, 426, 540
BmrI ACTGGG 1 cut(s) 486
BmsI GCATC 3 cut(s) 165, 328, 427
BmuI ACTGGG 1 cut(s) 486
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 155
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 2 cut(s) 75, 424
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 409, 481
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 4 cut(s) 386, 392, 426, 540
BseDI CCNNGG 2 cut(s) 75, 424
BseGI GGATG 4 cut(s) 144, 343, 376, 697
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 2 cut(s) 409, 481
BseX3I CGGCCG 1 cut(s) 571
BseXI GCAGC 7 cut(s) 35, 58, 67, 159, 607, 618, 739
BsgI GTGCAG 1 cut(s) 617
Bsh1285I CGRYCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 97, 573
BsiEI CGRYCG 1 cut(s) 574
BsiSI CCGG 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 391
BsmAI GTCTC 2 cut(s) 157, 738
BsmBI CGTCTC 1 cut(s) 738
BsnI GGCC 2 cut(s) 97, 573
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 3 cut(s) 145, 150, 560
BspACI CCGC 4 cut(s) 51, 254, 574, 714
BspANI GGCC 2 cut(s) 97, 573
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 228
BspPI GGATC 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 409, 481
BssECI CCNNGG 2 cut(s) 75, 424
BssMI GATC 3 cut(s) 145, 150, 560
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 4 cut(s) 386, 392, 426, 540
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 296
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 4 cut(s) 144, 343, 376, 697
BstKTI GATC 3 cut(s) 148, 153, 563
BstMAI GTCTC 2 cut(s) 157, 738
BstMBI GATC 3 cut(s) 145, 150, 560
BstMCI CGRYCG 1 cut(s) 574
BstMWI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 631
BstNI CCWGG 4 cut(s) 386, 392, 426, 540
BstSCI CCNGG 4 cut(s) 384, 390, 424, 538
BstV1I GCAGC 7 cut(s) 35, 58, 67, 159, 607, 618, 739
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BstZI CGGCCG 1 cut(s) 571
BsuRI GGCC 2 cut(s) 97, 573
BtsCI GGATG 4 cut(s) 144, 343, 376, 697
BtsIMutI CAGTG 2 cut(s) 273, 474
CaiI CAGNNNCTG 1 cut(s) 391
Cfr13I GGNCC 2 cut(s) 382, 388
Csp6I GTAC 5 cut(s) 13, 421, 587, 680, 724
CviQI GTAC 5 cut(s) 13, 421, 587, 680, 724
DdeI CTNAG 1 cut(s) 498
DpnI GATC 3 cut(s) 147, 152, 562
DpnII GATC 3 cut(s) 145, 150, 560
DraIII CACNNNGTG 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 95, 571
EagI CGGCCG 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
EclXI CGGCCG 1 cut(s) 571
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 382, 388
Eco52I CGGCCG 1 cut(s) 571
Eco57I CTGAAG 6 cut(s) 335, 611, 647, 683, 764, 778
EcoO109I RGGNCCY 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 4 cut(s) 384, 390, 424, 538
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 738
FaiI YATR 3 cut(s) 186, 236, 468
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 9 cut(s) 49, 52, 72, 81, 173, 574, 596, 632, 753
FokI GGATG 4 cut(s) 151, 350, 383, 704
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 9 cut(s) 49, 52, 72, 81, 173, 574, 596, 632, 753
FspBI CTAG 2 cut(s) 653, 765
GluI GCNGC 9 cut(s) 49, 52, 72, 81, 173, 574, 596, 632, 753
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 97, 573
HapII CCGG 1 cut(s) 570
HinfI GANTC 6 cut(s) 119, 190, 242, 304, 310, 775
HpaII CCGG 1 cut(s) 570
HphI GGTGA 1 cut(s) 338
Hpy188I TCNGA 7 cut(s) 150, 195, 295, 309, 315, 774, 790
Hpy188III TCNNGA 3 cut(s) 160, 215, 602
HpyAV CCTTC 6 cut(s) 124, 240, 251, 310, 373, 658
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 4 cut(s) 175, 410, 521, 634
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 631
HpyF3I CTNAG 1 cut(s) 498
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 145, 150, 560
Lsp1109I GCAGC 7 cut(s) 35, 58, 67, 159, 607, 618, 739
LweI GCATC 3 cut(s) 165, 328, 427
MaeI CTAG 2 cut(s) 653, 765
MaeIII GTNAC 3 cut(s) 472, 526, 797
MalI GATC 3 cut(s) 147, 152, 562
MboI GATC 3 cut(s) 145, 150, 560
MboII GAAGA 3 cut(s) 313, 555, 770
MflI RGATCY 1 cut(s) 560
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 6 cut(s) 286, 462, 686, 700, 759, 768
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 2 cut(s) 251, 313
MmeI TCCRAC 1 cut(s) 677
MnlI CCTC 9 cut(s) 76, 198, 216, 265, 322, 466, 493, 614, 637
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 570
MspR9I CCNGG 4 cut(s) 386, 392, 426, 540
MvaI CCWGG 4 cut(s) 386, 392, 426, 540
MwoI GCNNNNNNNGC 6 cut(s) 48, 57, 71, 77, 80, 631
NdeII GATC 3 cut(s) 145, 150, 560
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 472
PfeI GAWTC 4 cut(s) 119, 190, 310, 775
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 9 cut(s) 50, 53, 73, 82, 174, 575, 597, 633, 754
PleI GAGTC 2 cut(s) 250, 312
PpsI GAGTC 2 cut(s) 250, 312
PpuMI RGGWCCY 1 cut(s) 388
Psp5II RGGWCCY 1 cut(s) 388
Psp6I CCWGG 4 cut(s) 384, 390, 424, 538
PspGI CCWGG 4 cut(s) 384, 390, 424, 538
PspN4I GGNNCC 1 cut(s) 228
PspPI GGNCC 2 cut(s) 382, 388
PspPPI RGGWCCY 1 cut(s) 388
PstNI CAGNNNCTG 1 cut(s) 391
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 5 cut(s) 14, 422, 588, 681, 725
RsaNI GTAC 5 cut(s) 13, 421, 587, 680, 724
SatI GCNGC 9 cut(s) 49, 52, 72, 81, 173, 574, 596, 632, 753
Sau3AI GATC 3 cut(s) 145, 150, 560
Sau96I GGNCC 2 cut(s) 382, 388
ScaI AGTACT 1 cut(s) 588
SchI GAGTC 2 cut(s) 251, 313
ScrFI CCNGG 4 cut(s) 386, 392, 426, 540
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 3 cut(s) 165, 328, 427
SinI GGWCC 2 cut(s) 382, 388
Sse9I AATT 6 cut(s) 286, 462, 686, 700, 759, 768
SsiI CCGC 4 cut(s) 51, 254, 574, 714
SspI AATATT 1 cut(s) 549
SspMI CTAG 2 cut(s) 653, 765
StyD4I CCNGG 4 cut(s) 384, 390, 424, 538
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 1 cut(s) 268
TaqI TCGA 2 cut(s) 27, 619
TasI AATT 6 cut(s) 286, 462, 686, 700, 759, 768
TatI WGTACW 1 cut(s) 586
TauI GCSGC 2 cut(s) 54, 576
TfiI GAWTC 4 cut(s) 119, 190, 310, 775
TscAI CASTG 2 cut(s) 273, 481
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 7 cut(s) 48, 71, 80, 172, 595, 631, 752
Tsp45I GTSAC 1 cut(s) 472
TspRI CASTG 2 cut(s) 273, 481
Van91I CCANNNNNTGG 1 cut(s) 391
VpaK11BI GGWCC 2 cut(s) 382, 388
XapI RAATTY 2 cut(s) 700, 768
XspI CTAG 2 cut(s) 653, 765
ZrmI AGTACT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.