Rh1CG246100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000506
Physical Location & Seq
Forward (+)
50745316 .. 50745800
485 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG246100.1

Sequence Viewer

Length: 312 bp
ATGACGGTATCTCCAATTCGCCAAGAGAGCAAATCGGAAAAGAATCCACATTACAAACGACCTGAACGACGTCGCAGAAAACGAAAAGGACGAAACTTGGGGCAAGAAGTCTACACCCTCTTCCAATGTCAACCCACCACTCCACCAGAGATCCAGGTGGAGATGATGAACCAGCATTCCGGGCCAAATTCGGGTTACGGATTCGGGGAATGTGCGAAAGAAAACACCTTTCACTCTTTTGTCGTCAGTCTGATATCAGACAAATGTGATGCAGTGGATTATAGACGCCATGTCGTTTGGGACCAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

12.07

Weight (kDa)

9.33

Isoelectric Point (pI)

64.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 73
AccI GTMKAC 1 cut(s) 111
AclWI GGATC 1 cut(s) 145
AcsI RAATTY 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 70, 286
AfiI CCNNNNNNNGG 1 cut(s) 191
AhdI GACNNNNNGTC 1 cut(s) 290
AjnI CCWGG 1 cut(s) 153
AloI GAACNNNNNNTCC 2 cut(s) 161, 193
AlwI GGATC 1 cut(s) 145
AoxI GGCC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 187
AspS9I GGNCC 2 cut(s) 182, 301
AsuC2I CCSGG 1 cut(s) 181
AvaII GGWCC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 155
BcnI CCSGG 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 155, 181
Bme18I GGWCC 1 cut(s) 301
BmeRI GACNNNNNGTC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 182, 301
BmiI GGNNCC 1 cut(s) 302
BmrFI CCNGG 2 cut(s) 155, 181
BmsI GCATC 1 cut(s) 259
BpuMI CCSGG 1 cut(s) 181
BsaHI GRCGYC 2 cut(s) 70, 286
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 191
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 191
BsmI GAATGC 1 cut(s) 175
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 1 cut(s) 150
BspANI GGCC 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 302
BspPI GGATC 1 cut(s) 145
BssMI GATC 1 cut(s) 150
BssNI GRCGYC 2 cut(s) 70, 286
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 125
BstACI GRCGYC 2 cut(s) 70, 286
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 27, 181
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 2 cut(s) 153, 179
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 182, 301
CseI GACGC 1 cut(s) 294
CviAII CATG 1 cut(s) 290
CviJI RGCY 1 cut(s) 184
CviKI_1 RGCY 1 cut(s) 184
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
DriI GACNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 125
Eam1105I GACNNNNNGTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 125
Eco32I GATATC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 153
EcoRV GATATC 1 cut(s) 255
FaeI CATG 1 cut(s) 293
FaiI YATR 2 cut(s) 282, 291
FatI CATG 1 cut(s) 289
FblI GTMKAC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 294
Hin1I GRCGYC 2 cut(s) 70, 286
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 2 cut(s) 43, 201
HpaII CCGG 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 112, 131
Hpy188I TCNGA 3 cut(s) 37, 252, 259
Hpy8I GTNNAC 2 cut(s) 112, 131
Hpy99I CGWCG 2 cut(s) 72, 75
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 181
HpySE526I ACGT 1 cut(s) 70
Hsp92I GRCGYC 2 cut(s) 70, 286
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 150
LpnPI CCDG 6 cut(s) 75, 140, 159, 167, 185, 193
LweI GCATC 1 cut(s) 259
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 1 cut(s) 194
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MboII GAAGA 1 cut(s) 112
MflI RGATCY 1 cut(s) 150
MluCI AATT 2 cut(s) 15, 187
MnlI CCTC 1 cut(s) 128
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 155, 181
Mva1269I GAATGC 1 cut(s) 175
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 27, 181
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 302
PcsI WCGNNNNNNNCGW 3 cut(s) 64, 79, 88
PctI GAATGC 1 cut(s) 175
PfeI GAWTC 2 cut(s) 43, 201
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 302
PspPI GGNCC 2 cut(s) 182, 301
PsuI RGATCY 1 cut(s) 150
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 2 cut(s) 182, 301
ScrFI CCNGG 2 cut(s) 155, 181
SetI ASST 4 cut(s) 64, 73, 159, 230
SfaNI GCATC 1 cut(s) 259
SinI GGWCC 1 cut(s) 301
Sse9I AATT 2 cut(s) 15, 187
StyD4I CCNGG 2 cut(s) 153, 179
TaaI ACNGT 1 cut(s) 7
TaiI ACGT 1 cut(s) 73
TasI AATT 2 cut(s) 15, 187
TfiI GAWTC 2 cut(s) 43, 201
TscAI CASTG 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 111
ZraI GACGTC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.