FvH4_7g14571

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000506
Physical Location & Seq
Forward (+)
12865518 .. 12866035
518 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g14571.t1

Sequence Viewer

Length: 267 bp
ATGGGTGATCTATACGCTTTGGATTTCGACGGAGTCATCTGTGATAGCTGCGGAGAGAGCTCTCTCTCTACCATGAAGGCTGCTAAAGTCAGATGGCCAGCTCTGTTCAACGGTGTGGATTCAACTTTGGAGAATTGGGTTCTTGATCAAATGCGCATTGTGAGGCCTGTGGTGGAAACCGGGTACGAGAATCTTCTACTTGTGAGGTTACTTCTGGAGATGAGGGTTCCTTCTATAAGGAAGTCATCAGTCGGGATGGGCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.78

Weight (kDa)

4.92

Isoelectric Point (pI)

33.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000506)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45990 AT2G45990 AT2G45990 AT2G45990
fragaria_vesca FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_3g44250 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14540 FvH4_7g14571 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620 FvH4_7g14620
malus_domestica MD01G1065200.v1.1 MD09G1245400.v1.1
prunus_persica Prupe.2G172200_v2.0.a1
pyrus_communis pycom01g09450
rosa_chinensis RchiOBHm_Chr1g0355961 RchiOBHm_Chr1g0356011 RchiOBHm_Chr1g0356041 RchiOBHm_Chr1g0356051 RchiOBHm_Chr1g0356101 RchiOBHm_Chr1g0356141
rosa_laevigata RLG00000028102 RLG00000028107 RLG00000028108 RLG00000028110 RLG00000028112
rosa_multiflora Rmu_sc0002569.1_g000001 Rmu_sc0002569.1_g000022 Rmu_sc0003229.1_g000002 Rmu_sc0004705.1_g000007 Rmu_sc0007127.1_g000003 Rmu_sc0007127.1_g000007 Rmu_sc0011003.1_g000003 Rmu_sc0014206.1_g000012
rosa_roxburghii Rroxscaffold_4G00299780 Rroxscaffold_4G00299790 Rroxscaffold_4G00299810 Rroxscaffold_4G00299820 Rroxscaffold_4G00299870 Rroxscaffold_4G00299890
rosa_rugosa Rorug01G0249000 Rorug01G0249200 Rorug01G0249300 Rorug01G0249400 Rorug01G0249400 Rorug01G0249500 Rorug01G0249600
rosa_samantha Rh1BG230700 Rh1BG230800 Rh1BG230900 Rh1BG231200 Rh1BG231300 Rh1CG041500 Rh1CG244900 Rh1CG245500 Rh1CG245600 Rh1CG246100 Rh1CG246200 Rh1DG028400 Rh1DG258800 Rh1DG258900 Rh1DG259000
rosa_wichuraiana Rw1G023130 Rw1G023160 Rw1G023170 Rw1G023180 Rw1G023220 Rw1G023230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 155
AciI CCGC 1 cut(s) 51
AcoI YGGCCR 1 cut(s) 95
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 2 cut(s) 109, 123
AluBI AGCT 3 cut(s) 48, 60, 101
AluI AGCT 3 cut(s) 48, 60, 101
Alw21I GWGCWC 1 cut(s) 62
AoxI GGCC 2 cut(s) 95, 164
ApeKI GCWGC 2 cut(s) 48, 80
AspLEI GCGC 1 cut(s) 156
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 17
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 35, 67
BccI CCATC 2 cut(s) 87, 250
BclI TGATCA 1 cut(s) 145
BcnI CCSGG 1 cut(s) 181
BisI GCNGC 2 cut(s) 49, 81
BlsI GCNGC 2 cut(s) 50, 82
Bme1390I CCNGG 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 181
BseGI GGATG 1 cut(s) 261
BseXI GCAGC 2 cut(s) 35, 67
BshFI GGCC 2 cut(s) 97, 166
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 180
BsnI GGCC 2 cut(s) 97, 166
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 2 cut(s) 7, 145
BspACI CCGC 1 cut(s) 51
BspANI GGCC 2 cut(s) 97, 166
BspLI GGNNCC 1 cut(s) 228
BssMI GATC 2 cut(s) 7, 145
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 99
BstF5I GGATG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 156
BstKTI GATC 2 cut(s) 10, 148
BstMBI GATC 2 cut(s) 7, 145
BstMWI GCNNNNNNNGC 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 2 cut(s) 35, 67
BsuRI GGCC 2 cut(s) 97, 166
BtsCI GGATG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 184
CviAII CATG 1 cut(s) 73
CviJI RGCY 7 cut(s) 48, 60, 80, 97, 101, 166, 261
CviKI_1 RGCY 7 cut(s) 48, 60, 80, 97, 101, 166, 261
CviQI GTAC 1 cut(s) 184
DpnI GATC 2 cut(s) 9, 147
DpnII GATC 2 cut(s) 7, 145
EaeI YGGCCR 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 60
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 1 cut(s) 76
FaiI YATR 4 cut(s) 13, 74, 236, 265
FatI CATG 1 cut(s) 72
FbaI TGATCA 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 49, 81
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 2 cut(s) 49, 81
FspAI RTGCGCAY 1 cut(s) 155
FspI TGCGCA 1 cut(s) 155
GlaI GCGC 1 cut(s) 155
GluI GCNGC 2 cut(s) 49, 81
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 97, 166
HapII CCGG 1 cut(s) 180
HhaI GCGC 1 cut(s) 156
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 154
HinP1I GCGC 1 cut(s) 154
HinfI GANTC 3 cut(s) 33, 119, 190
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 92
Hpy188III TCNNGA 3 cut(s) 143, 215, 253
Hpy99I CGWCG 1 cut(s) 32
HpyAV CCTTC 2 cut(s) 70, 240
HpyCH4III ACNGT 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 154
Ksp22I TGATCA 1 cut(s) 145
Kzo9I GATC 2 cut(s) 7, 145
LpnPI CCDG 4 cut(s) 111, 180, 193, 200
Lsp1109I GCAGC 2 cut(s) 35, 67
MaeIII GTNAC 1 cut(s) 207
MalI GATC 2 cut(s) 9, 147
MboI GATC 2 cut(s) 7, 145
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 1 cut(s) 133
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 1 cut(s) 42
MnlI CCTC 3 cut(s) 156, 198, 216
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
Msp20I TGGCCA 1 cut(s) 97
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 181
MwoI GCNNNNNNNGC 1 cut(s) 57
NciI CCSGG 1 cut(s) 181
NdeII GATC 2 cut(s) 7, 145
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 228
NsbI TGCGCA 1 cut(s) 155
PceI AGGCCT 1 cut(s) 166
PfeI GAWTC 2 cut(s) 119, 190
PflFI GACNNNGTC 1 cut(s) 32
PkrI GCNGC 2 cut(s) 50, 82
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp124BI GAGCTC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 62
SatI GCNGC 2 cut(s) 49, 81
Sau3AI GATC 2 cut(s) 7, 145
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 62
SetI ASST 4 cut(s) 50, 62, 103, 209
SgeI CNNG 9 cut(s) 85, 110, 155, 179, 192, 193, 199, 212, 227
Sse9I AATT 1 cut(s) 133
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 1 cut(s) 51
SstI GAGCTC 1 cut(s) 62
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 27
TasI AATT 1 cut(s) 133
TfiI GAWTC 2 cut(s) 119, 190
TseI GCWGC 2 cut(s) 48, 80
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 45
Tth111I GACNNNGTC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.