Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

18440003 .. 18442211

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G49720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGAGACGGCAAGTAGGTTCAACAAGACGTGTTGGCGATGGTGGAAGCTTCCCTTTTGCAGGAGCTTTACACTCAAAGTCTCGATCTTCTCCACTACTATCTATTTGCCTTGTTCTTGTGGGGGCTTGTCTTCTCATTGGTTATGCTTACAGTGGTCCAGGTATATTTAAAAGTATCAAAGAAGTTAGCAAAGTTACAGGTGACTATTCTTGCACAGCAGAAGTCCAAAGAGCCATTCCTGTACTTAAGAAGGCTTATGGAGATGGCATGCGCAAAGTCTTGCATGTGGGCCCTGACACATGCTCAGTGGTTTCCAGTCTATTGAAAGAAGAAGAGACTGAAGCATGGGGTGTTGAACCATATGATATTGAGGATGCAGATTCTCACTGCAAGAGTTTTGTGAGCAAAGGTCTTGTACGTGTTGCTGATATCAAGTTTCCTCTGCCCTACCGGGCAAAATCCTTCTCTCTTGTGATTGTGTCAGATGCTCTGGATTATCTCTCACCCAAGTACCTGAACAAGACCGTTCCTGAACTCGCAAGGGTGGCTTCAGACGGTGTGGTTCTTTTTGCAGGTCTCCCTGGTCAGCAGAGAGCTAAAGTTGCTGAACTCTCTAAATTCGGCCGACCCGCTAAAATGCGTAGCGCATCGTGGTGGAACCGCTTTTTCGTCCAGACAAACTTAGAAGAAAACGATGCACCAAGCAAGAAGTTCGAACAGGCTGTTTCCAAAGGATTATACAAACCAGCCTGCCAAGTCTTCCACCTCAAGCCATTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW Methyltransf_11

Protein Analysis

261

Amino Acids

28.53

Weight (kDa)

9.36

Isoelectric Point (pI)

43.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	566
AciI	CCGC	2 cut(s)	633, 664
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	2 cut(s)	363, 537
AfaI	GTAC	3 cut(s)	246, 420, 515
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	2 cut(s)	31, 421
AgsI	TTSAA	3 cut(s)	24, 328, 359
AjiI	CACGTC	1 cut(s)	32
AjnI	CCWGG	2 cut(s)	160, 583
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	51, 68, 599
AluI	AGCT	3 cut(s)	51, 68, 599
Alw26I	GTCTC	3 cut(s)	87, 332, 584
AoxI	GGCC	2 cut(s)	292, 625
ApaI	GGGCCC	1 cut(s)	296
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	276, 650
AspS9I	GGNCC	3 cut(s)	158, 292, 293
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	2 cut(s)	215, 498
AsuII	TTCGAA	1 cut(s)	717
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	296
BaeI	ACNNNNGTAYC	2 cut(s)	497, 530
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	125, 754
BccI	CCATC	2 cut(s)	35, 260
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	697, 731
BciT130I	CCWGG	2 cut(s)	162, 585
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	3 cut(s)	87, 332, 584
BfrI	CTTAAG	1 cut(s)	248
BfuAI	ACCTGC	1 cut(s)	566
Bme1390I	CCNGG	3 cut(s)	162, 455, 585
Bme18I	GGWCC	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	32
BmgT120I	GGNCC	3 cut(s)	158, 292, 293
BmiI	GGNNCC	2 cut(s)	294, 662
BmrFI	CCNGG	3 cut(s)	162, 455, 585
BmsI	GCATC	4 cut(s)	367, 478, 659, 688
BpiI	GAAGAC	2 cut(s)	125, 754
Bpu14I	TTCGAA	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	755
BpuMI	CCSGG	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	318
BseBI	CCWGG	2 cut(s)	162, 585
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	318
BseSI	GKGCMC	1 cut(s)	296
BseX3I	CGGCCG	1 cut(s)	625
Bsh1285I	CGRYCG	1 cut(s)	628
BshFI	GGCC	2 cut(s)	294, 627
BsiEI	CGRYCG	1 cut(s)	628
BsiSI	CCGG	1 cut(s)	454
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	3 cut(s)	87, 332, 584
BsnI	GGCC	2 cut(s)	294, 627
Bso31I	GGTCTC	1 cut(s)	584
Bsp119I	TTCGAA	1 cut(s)	717
Bsp120I	GGGCCC	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	86
BspACI	CCGC	2 cut(s)	633, 664
BspANI	GGCC	2 cut(s)	294, 627
BspCNI	CTCAG	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	294, 662
BspMI	ACCTGC	1 cut(s)	566
BspT104I	TTCGAA	1 cut(s)	717
BspTI	CTTAAG	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	584
BsrI	ACTGG	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	1 cut(s)	86
Bst2UI	CCWGG	2 cut(s)	162, 585
Bst4CI	ACNGT	3 cut(s)	155, 529, 560
Bst6I	CTCTTC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	248
BstBAI	YACGTR	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	717
BstC8I	GCNNGC	2 cut(s)	272, 754
BstDEI	CTNAG	2 cut(s)	307, 685
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	382
BstHHI	GCGC	2 cut(s)	276, 650
BstKTI	GATC	1 cut(s)	89
BstMAI	GTCTC	3 cut(s)	87, 332, 584
BstMBI	GATC	1 cut(s)	86
BstMCI	CGRYCG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 605
BstNI	CCWGG	2 cut(s)	162, 585
BstNSI	RCATGY	3 cut(s)	274, 290, 306
BstSCI	CCNGG	3 cut(s)	160, 453, 583
BstSLI	GKGCMC	1 cut(s)	296
BstV2I	GAAGAC	2 cut(s)	125, 754
BstZI	CGGCCG	1 cut(s)	625
BsuRI	GGCC	2 cut(s)	294, 627
BtgZI	GCGATG	1 cut(s)	54
BtrI	CACGTC	1 cut(s)	32
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	388
BtsIMutI	CAGTG	3 cut(s)	160, 315, 388
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	272, 754
CfoI	GCGC	2 cut(s)	276, 650
Cfr13I	GGNCC	3 cut(s)	158, 292, 293
Csp6I	GTAC	3 cut(s)	245, 419, 514
CviAII	CATG	4 cut(s)	271, 287, 303, 348
CviQI	GTAC	3 cut(s)	245, 419, 514
DdeI	CTNAG	2 cut(s)	307, 685
DpnI	GATC	1 cut(s)	88
DpnII	GATC	1 cut(s)	86
DraI	TTTAAA	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	625
EagI	CGGCCG	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EclXI	CGGCCG	1 cut(s)	625
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	584
Eco32I	GATATC	1 cut(s)	433
Eco47I	GGWCC	1 cut(s)	158
Eco52I	CGGCCG	1 cut(s)	625
Eco57I	CTGAAG	2 cut(s)	363, 537
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	160, 583
EcoRV	GATATC	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	4 cut(s)	274, 290, 306, 351
FalI	AAGNNNNNCTT	4 cut(s)	40, 72, 535, 567
FatI	CATG	4 cut(s)	270, 286, 302, 347
FauI	CCCGC	1 cut(s)	640
FauNDI	CATATG	1 cut(s)	364
FokI	GGATG	1 cut(s)	389
FriOI	GRGCYC	1 cut(s)	296
FspI	TGCGCA	1 cut(s)	275
GlaI	GCGC	2 cut(s)	275, 649
HaeIII	GGCC	2 cut(s)	294, 627
HapII	CCGG	1 cut(s)	454
HhaI	GCGC	2 cut(s)	276, 650
Hin1II	CATG	4 cut(s)	274, 290, 306, 351
Hin6I	GCGC	2 cut(s)	274, 648
HinP1I	GCGC	2 cut(s)	274, 648
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	2 cut(s)	215, 498
Hpy188I	TCNGA	2 cut(s)	487, 556
Hpy188III	TCNNGA	4 cut(s)	84, 494, 533, 676
HpyAV	CCTTC	2 cut(s)	247, 475
HpyCH4III	ACNGT	3 cut(s)	155, 529, 560
HpyCH4IV	ACGT	2 cut(s)	31, 421
HpyCH4V	TGCA	7 cut(s)	62, 216, 286, 380, 393, 575, 701
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 605
HpyF3I	CTNAG	2 cut(s)	307, 685
HpySE526I	ACGT	2 cut(s)	31, 421
Hsp92II	CATG	4 cut(s)	274, 290, 306, 351
HspAI	GCGC	2 cut(s)	274, 648
Kzo9I	GATC	1 cut(s)	86
LmnI	GCTCC	1 cut(s)	65
LweI	GCATC	4 cut(s)	367, 478, 659, 688
MaeII	ACGT	2 cut(s)	31, 421
MaeIII	GTNAC	2 cut(s)	196, 203
MalI	GATC	1 cut(s)	88
MboI	GATC	1 cut(s)	86
MboII	GAAGA	6 cut(s)	81, 125, 344, 347, 701, 754
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	1 cut(s)	620
MnlI	CCTC	3 cut(s)	367, 453, 779
MseI	TTAA	3 cut(s)	171, 249, 784
MslI	CAYNNNNRTG	1 cut(s)	655
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	3 cut(s)	162, 455, 585
MvaI	CCWGG	2 cut(s)	162, 585
MwoI	GCNNNNNNNGC	2 cut(s)	548, 605
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	1 cut(s)	364
NdeII	GATC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	274, 290, 306, 351
NlaIV	GGNNCC	2 cut(s)	294, 662
NmuCI	GTSAC	1 cut(s)	203
NsbI	TGCGCA	1 cut(s)	275
NspI	RCATGY	3 cut(s)	274, 290, 306
NspV	TTCGAA	1 cut(s)	717
PaeI	GCATGC	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	383
Ppu21I	YACGTR	1 cut(s)	422
Psp6I	CCWGG	2 cut(s)	160, 583
PspGI	CCWGG	2 cut(s)	160, 583
PspN4I	GGNNCC	2 cut(s)	294, 662
PspOMI	GGGCCC	1 cut(s)	292
PspPI	GGNCC	3 cut(s)	158, 292, 293
RsaI	GTAC	3 cut(s)	246, 420, 515
RsaNI	GTAC	3 cut(s)	245, 419, 514
RseI	CAYNNNNRTG	1 cut(s)	655
SaqAI	TTAA	3 cut(s)	171, 249, 784
Sau3AI	GATC	1 cut(s)	86
Sau96I	GGNCC	3 cut(s)	158, 292, 293
ScrFI	CCNGG	3 cut(s)	162, 455, 585
SduI	GDGCHC	1 cut(s)	296
SfaNI	GCATC	4 cut(s)	367, 478, 659, 688
SfuI	TTCGAA	1 cut(s)	717
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	655
SmlI	CTYRAG	2 cut(s)	248, 770
SmoI	CTYRAG	2 cut(s)	248, 770
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	1 cut(s)	620
SsiI	CCGC	2 cut(s)	633, 664
StyD4I	CCNGG	3 cut(s)	160, 453, 583
TaaI	ACNGT	3 cut(s)	155, 529, 560
TaiI	ACGT	2 cut(s)	34, 424
TaqI	TCGA	2 cut(s)	85, 717
TasI	AATT	1 cut(s)	620
TatI	WGTACW	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	171, 249, 784
Tru9I	TTAA	3 cut(s)	171, 249, 784
TscAI	CASTG	3 cut(s)	160, 315, 395
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspRI	CASTG	3 cut(s)	160, 315, 395
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	3 cut(s)	274, 290, 306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.