Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

22293816 .. 22296815

Gene Structure 3000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTCAAGGAGGGCGGTGGGATCCACACGCCGTAATGGAAACTTTCCGTTTGCTGGAGCCTTCAATTCAAAATCCAAGTCGTCCCCTTTACTATCCCTTGGCCTTGTAGTTGTGGGAGCGATCCTAATTGTCGGCTATGTTTATAAGGGCTTAGGTGTCTTCGGCGGGGGTGCCAACGTAGTTAGTAGAGTTGAAGGCGATTTCTCATGCACGCTAGAAGTTCAGAGAGCAATACCTTTCCTAAAGAAAGCGTATAGTGGCAGTATGCACAAAGTTTTGCATATTGGTCCTGATACTTGTTCAGTTGTGTCTGCATTGTTAAAGGATGACGAAATTGAAGCATGGGGTGTGGAACCATATGAGATAGAGGATGCTGACAGGAATTGCAGGAGTCTTGTGCGCAAAGGCATTGTGCGTGTGGCTGATATAAAGTTCCCTCTGCCCTATAAAGCAAAGTCTTTTTCTCTTGTGATAGTGTCAGATGCATTAGATTACCTCTCTCCAAAGTACCTGAACAGGACTCTTCCAGAATTGGCAAGGGTTTCTTCCGATGGTCTTGTTATTTTTTCAGGTTTCCCTGGTCAACAGAGAGCTAAAGTTTCTGAGTTATCCAAATTTGGACGCCCGGCCAAAATGCGGAGCTCCTCTTGGTGGATACGTTACTTTGTTCAGACCAGCTTAGAAGAAAATGAAGTTGCCATCAAGAAGTTTGAGCAGGTCACAACAAAGGAGTCATACCAGCCAAGCTGTCAAGTGTTTCACCTTAACTCATATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW

Protein Analysis

260

Amino Acids

28.67

Weight (kDa)

9.44

Isoelectric Point (pI)

46.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
Acc16I	TGCGCA	1 cut(s)	401
Acc36I	ACCTGC	1 cut(s)	706
AccB1I	GGYRCC	1 cut(s)	170
AciI	CCGC	3 cut(s)	14, 165, 637
AclWI	GGATC	3 cut(s)	15, 28, 115
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	614
AcyI	GRCGYC	1 cut(s)	622
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	53, 636, 651
AgsI	TTSAA	4 cut(s)	64, 69, 194, 338
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	4 cut(s)	593, 642, 678, 747
AluI	AGCT	4 cut(s)	593, 642, 678, 747
Alw21I	GWGCWC	1 cut(s)	644
AlwI	GGATC	3 cut(s)	15, 28, 115
AoxI	GGCC	2 cut(s)	100, 627
ApoI	RAATTY	1 cut(s)	614
ArsI	GACNNNNNNTTYG	2 cut(s)	62, 94
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	626
AsuHPI	GGTGA	1 cut(s)	752
AvaII	GGWCC	1 cut(s)	287
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	644
BccI	CCATC	2 cut(s)	545, 707
BceAI	ACGGC	1 cut(s)	15
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	626
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	706
BfuI	GTATCC	1 cut(s)	648
Bme1390I	CCNGG	2 cut(s)	579, 626
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	4 cut(s)	22, 58, 172, 354
BmrFI	CCNGG	2 cut(s)	579, 626
BmsI	GCATC	2 cut(s)	361, 472
BpiI	GAAGAC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	626
BsaHI	GRCGYC	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	97, 577
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 636, 651
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	2 cut(s)	97, 577
BseGI	GGATG	2 cut(s)	331, 376
BseLI	CCNNNNNNNGG	3 cut(s)	53, 636, 651
BseMII	CTCAG	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	634
BshFI	GGCC	2 cut(s)	102, 629
BshNI	GGYRCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	644
BsiSI	CCGG	1 cut(s)	626
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	3 cut(s)	53, 636, 651
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	2 cut(s)	102, 629
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	2 cut(s)	20, 120
BspACI	CCGC	3 cut(s)	14, 165, 637
BspANI	GGCC	2 cut(s)	102, 629
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	4 cut(s)	22, 58, 172, 354
BspMI	ACCTGC	1 cut(s)	706
BspPI	GGATC	3 cut(s)	15, 28, 115
BspT107I	GGYRCC	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	97, 577
BssMI	GATC	2 cut(s)	20, 120
BssNI	GRCGYC	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	97
Bst2UI	CCWGG	1 cut(s)	579
Bst6I	CTCTTC	1 cut(s)	528
BstACI	GRCGYC	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	151, 603, 679
BstF5I	GGATG	2 cut(s)	331, 376
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	2 cut(s)	23, 123
BstMBI	GATC	2 cut(s)	20, 120
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	2 cut(s)	577, 624
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	102, 629
BtsCI	GGATG	2 cut(s)	331, 376
BveI	ACCTGC	1 cut(s)	706
Cac8I	GCNNGC	1 cut(s)	212
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	287
CseI	GACGC	1 cut(s)	630
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	2 cut(s)	207, 342
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	3 cut(s)	151, 603, 679
DpnI	GATC	2 cut(s)	22, 122
DpnII	GATC	2 cut(s)	20, 120
EaeI	YGGCCR	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Ecl136II	GAGCTC	1 cut(s)	642
Eco130I	CCWWGG	1 cut(s)	97
Eco24I	GRGCYC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	642
EcoICRI	GAGCTC	1 cut(s)	642
EcoRII	CCWGG	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	97
EcoT22I	ATGCAT	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	97
FaeI	CATG	2 cut(s)	210, 345
FalI	AAGNNNNNCTT	2 cut(s)	529, 561
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	206, 341
FauI	CCCGC	1 cut(s)	158
FauNDI	CATATG	1 cut(s)	358
FokI	GGATG	2 cut(s)	338, 383
FriOI	GRGCYC	1 cut(s)	644
FspBI	CTAG	1 cut(s)	215
FspI	TGCGCA	1 cut(s)	401
GlaI	GCGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	102, 629
HapII	CCGG	1 cut(s)	626
HgaI	GACGC	1 cut(s)	630
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	2 cut(s)	210, 345
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	584
HindII	GTYRAC	1 cut(s)	584
HinfI	GANTC	3 cut(s)	391, 520, 731
HpaII	CCGG	1 cut(s)	626
HphI	GGTGA	1 cut(s)	752
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	5 cut(s)	225, 481, 550, 604, 672
Hpy188III	TCNNGA	3 cut(s)	290, 527, 703
Hpy8I	GTNNAC	1 cut(s)	584
HpyAV	CCTTC	2 cut(s)	70, 188
HpyCH4IV	ACGT	2 cut(s)	177, 658
HpyCH4V	TGCA	6 cut(s)	210, 268, 280, 314, 387, 485
HpyF3I	CTNAG	3 cut(s)	151, 603, 679
HpySE526I	ACGT	2 cut(s)	177, 658
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	2 cut(s)	210, 345
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	2 cut(s)	20, 120
LmnI	GCTCC	4 cut(s)	56, 116, 639, 647
LweI	GCATC	2 cut(s)	361, 472
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	177, 658
MaeIII	GTNAC	2 cut(s)	659, 718
MalI	GATC	2 cut(s)	22, 122
MboI	GATC	2 cut(s)	20, 120
MboII	GAAGA	4 cut(s)	151, 515, 537, 695
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	6 cut(s)	64, 126, 333, 382, 530, 614
MlyI	GAGTC	3 cut(s)	400, 514, 740
MnlI	CCTC	5 cut(s)	3, 361, 447, 506, 655
Mph1103I	ATGCAT	1 cut(s)	487
MseI	TTAA	2 cut(s)	320, 765
MspI	CCGG	1 cut(s)	626
MspR9I	CCNGG	2 cut(s)	579, 626
MvaI	CCWGG	1 cut(s)	579
NciI	CCSGG	1 cut(s)	626
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	2 cut(s)	20, 120
NlaIII	CATG	2 cut(s)	210, 345
NlaIV	GGNNCC	4 cut(s)	22, 58, 172, 354
NmuCI	GTSAC	1 cut(s)	718
NsbI	TGCGCA	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	487
PleI	GAGTC	3 cut(s)	399, 514, 739
PpsI	GAGTC	3 cut(s)	399, 514, 739
PsiI	TTATAA	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	4 cut(s)	22, 58, 172, 354
PspPI	GGNCC	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SacI	GAGCTC	1 cut(s)	644
SaqAI	TTAA	2 cut(s)	320, 765
Sau3AI	GATC	2 cut(s)	20, 120
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	3 cut(s)	400, 514, 740
ScrFI	CCNGG	2 cut(s)	579, 626
SduI	GDGCHC	1 cut(s)	644
SfaNI	GCATC	2 cut(s)	361, 472
SinI	GGWCC	1 cut(s)	287
Sse9I	AATT	6 cut(s)	64, 126, 333, 382, 530, 614
SsiI	CCGC	3 cut(s)	14, 165, 637
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	577, 624
StyI	CCWWGG	1 cut(s)	97
TaiI	ACGT	2 cut(s)	180, 661
TasI	AATT	6 cut(s)	64, 126, 333, 382, 530, 614
Tru1I	TTAA	2 cut(s)	320, 765
Tru9I	TTAA	2 cut(s)	320, 765
TseFI	GTSAC	1 cut(s)	718
Tsp45I	GTSAC	1 cut(s)	718
TspDTI	ATGAA	1 cut(s)	705
TspGWI	ACGGA	1 cut(s)	36
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	614
XspI	CTAG	1 cut(s)	215
Zsp2I	ATGCAT	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.