RLG00000007597

At3g49720-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000825
Physical Location & Seq
Reverse (-)
18819988 .. 18823393
3406 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007597

Sequence Viewer

Length: 921 bp
ATGGCGCCCTCCAAAAAGACAATGTTGTTTGTGTGCCTCTTGGTTGCTGCAGTGGCAGTAGTTGTTCCGATAGCTCAAGGGCAGCTGAACATTGGAAACCTCATCCCGCCTCTTCTTGGTCTCATCCGCATCCAAGGCACAGTCTTTCGCAGTGCCAATGGTCGTGCCACCGTTGGCACCATTCTTACCCCAGCATTTGCAATCTCTTCCGGCGTCCAATCTCTGGAAACACAGCGTGTGTTCGATGAGCCTTGCCTTCACTGGATCTTCGTTTACCTCTGCGATATTCGCTGCTGGAGAGGACCTCTGGCGTCCCCTGCCATCCTCGAGGCCGAACTGGAGCGCCGATCTCCGACGTCGAGGAGTGCTATACCAAAATCGGACCGAATTGGATTGCTTCGATTTCAGAAATGGCTCTCGCTGTTACGTCTTCTTCGTCTTGTACTGCAATCTCTGCTCGAACCTTCTCATCTGACCTCAAAGGTTTTCCTGGAAGAACTGTGCCTTTTGAGTCACTTCAAGCACTTGGATGCCATGTTGATGCAGTTTGCCCCAAAGAGAAAAGCTAGCGATGAACATATAGATATAGATACAGGATCTCCACCTAATGAATCTTGTGCTCAACTTCCGTGGCAAACAGATTTAGTAATGGAACTGCAGTTCAGCTCAGTTCTAAATTTATCGATTGAGGAGGCAAGTGAATGCGAACCGTTCTCGGGAGCATTGCTTATTCTTGCCTATTCACACAGTTGCAAAGGTGGACTTGGTAATATTAGAAGGGCTACTAGCAGGGTTCAAGGTGATTACTCATGCACAACGGAGGTCCAGCAAGCAATTCATGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTACATGTTGGCCCTAATACTTATACTGTGCATTTTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pentapeptide

Protein Analysis

307

Amino Acids

33.93

Weight (kDa)

8.37

Isoelectric Point (pI)

59.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 359
AbsI CCTCGAGG 1 cut(s) 326
AccB1I GGYRCC 2 cut(s) 4, 176
AccB7I CCANNNNNTGG 1 cut(s) 223
AciI CCGC 2 cut(s) 107, 127
AclWI GGATC 2 cut(s) 272, 604
AcsI RAATTY 1 cut(s) 676
AcyI GRCGYC 4 cut(s) 5, 213, 311, 356
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 444
AfiI CCNNNNNNNGG 3 cut(s) 116, 223, 716
AflIII ACRYGT 1 cut(s) 883
AgsI TTSAA 3 cut(s) 520, 797, 847
AjnI CCWGG 1 cut(s) 489
AloI GAACNNNNNNTCC 2 cut(s) 644, 676
AluBI AGCT 4 cut(s) 74, 85, 566, 666
AluI AGCT 4 cut(s) 74, 85, 566, 666
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 2 cut(s) 272, 604
Ama87I CYCGRG 2 cut(s) 326, 715
AoxI GGCC 2 cut(s) 330, 889
ApeKI GCWGC 3 cut(s) 47, 82, 291
ApoI RAATTY 1 cut(s) 676
AspLEI GCGC 2 cut(s) 7, 345
AspS9I GGNCC 4 cut(s) 302, 382, 823, 890
AsuHPI GGTGA 2 cut(s) 812, 872
AsuNHI GCTAGC 1 cut(s) 566
AvaI CYCGRG 2 cut(s) 326, 715
AvaII GGWCC 3 cut(s) 302, 382, 823
BanI GGYRCC 2 cut(s) 4, 176
BbsI GAAGAC 1 cut(s) 422
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 3 cut(s) 34, 94, 278
BccI CCATC 1 cut(s) 329
BciT130I CCWGG 1 cut(s) 491
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 567, 786
BfmI CTRYAG 2 cut(s) 48, 656
BfoI RGCGCY 2 cut(s) 8, 346
BisI GCNGC 3 cut(s) 48, 83, 292
BlsI GCNGC 3 cut(s) 49, 84, 293
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 3 cut(s) 302, 382, 823
BmeT110I CYCGRG 2 cut(s) 326, 715
BmgT120I GGNCC 4 cut(s) 302, 382, 823, 890
BmiI GGNNCC 2 cut(s) 6, 178
BmrFI CCNGG 1 cut(s) 491
BmsI GCATC 3 cut(s) 138, 520, 531
BmtI GCTAGC 1 cut(s) 570
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpmI CTGGAG 2 cut(s) 316, 359
BpuEI CTTGAG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 683
BsaHI GRCGYC 4 cut(s) 5, 213, 311, 356
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 133, 629
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 223, 716
Bse1I ACTGG 2 cut(s) 266, 342
Bse3DI GCAATG 1 cut(s) 722
BseBI CCWGG 1 cut(s) 491
BseCI ATCGAT 1 cut(s) 683
BseDI CCNNGG 2 cut(s) 133, 629
BseGI GGATG 5 cut(s) 102, 123, 129, 321, 535
BseLI CCNNNNNNNGG 3 cut(s) 116, 223, 716
BseMI GCAATG 1 cut(s) 722
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 2 cut(s) 266, 342
BseRI GAGGAG 2 cut(s) 376, 704
BseXI GCAGC 3 cut(s) 34, 94, 278
BseYI CCCAGC 1 cut(s) 190
BshFI GGCC 2 cut(s) 332, 891
BshNI GGYRCC 2 cut(s) 4, 176
BshVI ATCGAT 1 cut(s) 683
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 326, 715
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 3 cut(s) 116, 223, 716
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 2 cut(s) 332, 891
Bso31I GGTCTC 1 cut(s) 125
BsoBI CYCGRG 2 cut(s) 326, 715
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 3 cut(s) 264, 347, 596
BspACI CCGC 2 cut(s) 107, 127
BspANI GGCC 2 cut(s) 332, 891
BspCNI CTCAG 1 cut(s) 680
BspDI ATCGAT 1 cut(s) 683
BspLI GGNNCC 2 cut(s) 6, 178
BspMAI CTGCAG 2 cut(s) 52, 660
BspOI GCTAGC 1 cut(s) 570
BspPI GGATC 2 cut(s) 272, 604
BspT107I GGYRCC 2 cut(s) 4, 176
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 722
BsrI ACTGG 2 cut(s) 266, 342
BssECI CCNNGG 2 cut(s) 133, 629
BssMI GATC 3 cut(s) 264, 347, 596
BssNI GRCGYC 4 cut(s) 5, 213, 311, 356
BssT1I CCWWGG 1 cut(s) 133
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 6 cut(s) 142, 172, 501, 711, 749, 907
Bst6I CTCTTC 2 cut(s) 117, 211
BstACI GRCGYC 4 cut(s) 5, 213, 311, 356
BstAPI GCANNNNNTGC 1 cut(s) 454
BstC8I GCNNGC 3 cut(s) 568, 831, 869
BstDEI CTNAG 1 cut(s) 667
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 5 cut(s) 102, 123, 129, 321, 535
BstH2I RGCGCY 2 cut(s) 8, 346
BstHHI GCGC 2 cut(s) 7, 345
BstKTI GATC 3 cut(s) 267, 350, 599
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 3 cut(s) 264, 347, 596
BstMWI GCNNNNNNNGC 5 cut(s) 53, 135, 288, 317, 454
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 2 cut(s) 871, 887
BstSCI CCNGG 1 cut(s) 489
BstSFI CTRYAG 2 cut(s) 48, 656
BstV1I GCAGC 3 cut(s) 34, 94, 278
BstV2I GAAGAC 1 cut(s) 422
BstX2I RGATCY 2 cut(s) 264, 596
BstYI RGATCY 2 cut(s) 264, 596
Bsu15I ATCGAT 1 cut(s) 683
BsuRI GGCC 2 cut(s) 332, 891
BsuTUI ATCGAT 1 cut(s) 683
BtgI CCRYGG 1 cut(s) 629
BtgZI GCGATG 1 cut(s) 585
BtsCI GGATG 5 cut(s) 102, 123, 129, 321, 535
BtsI GCAGTG 2 cut(s) 57, 157
BtsIMutI CAGTG 3 cut(s) 57, 157, 259
Cac8I GCNNGC 3 cut(s) 568, 831, 869
CfoI GCGC 2 cut(s) 7, 345
Cfr13I GGNCC 4 cut(s) 302, 382, 823, 890
ClaI ATCGAT 1 cut(s) 683
CpoI CGGWCCG 1 cut(s) 382
CseI GACGC 2 cut(s) 202, 300
Csp6I GTAC 1 cut(s) 443
CspCI CAANNNNNGTGG 2 cut(s) 611, 646
CspI CGGWCCG 1 cut(s) 382
CviAII CATG 5 cut(s) 535, 810, 839, 868, 884
CviJI RGCY 9 cut(s) 74, 85, 250, 332, 415, 566, 666, 782, 891
CviKI_1 RGCY 9 cut(s) 74, 85, 250, 332, 415, 566, 666, 782, 891
CviQI GTAC 1 cut(s) 443
DdeI CTNAG 1 cut(s) 667
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 266, 349, 598
DpnII GATC 3 cut(s) 264, 347, 596
DraIII CACNNNGTG 1 cut(s) 236
Eam1104I CTCTTC 2 cut(s) 117, 211
EarI CTCTTC 2 cut(s) 117, 211
Eco130I CCWWGG 1 cut(s) 133
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 3 cut(s) 302, 382, 823
Eco88I CYCGRG 2 cut(s) 326, 715
EcoO109I RGGNCCY 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 489
EcoT14I CCWWGG 1 cut(s) 133
EcoT22I ATGCAT 1 cut(s) 873
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 5 cut(s) 538, 813, 842, 871, 887
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 1 cut(s) 298
FatI CATG 5 cut(s) 534, 809, 838, 867, 883
FauI CCCGC 1 cut(s) 114
FauNDI CATATG 1 cut(s) 856
Fnu4HI GCNGC 3 cut(s) 48, 83, 292
FokI GGATG 5 cut(s) 89, 110, 116, 308, 542
Fsp4HI GCNGC 3 cut(s) 48, 83, 292
FspBI CTAG 2 cut(s) 567, 786
GlaI GCGC 2 cut(s) 6, 344
GluI GCNGC 3 cut(s) 48, 83, 292
GsaI CCCAGC 1 cut(s) 194
GsuI CTGGAG 2 cut(s) 316, 359
HaeII RGCGCY 2 cut(s) 8, 346
HaeIII GGCC 2 cut(s) 332, 891
HapII CCGG 1 cut(s) 210
HgaI GACGC 2 cut(s) 202, 300
HhaI GCGC 2 cut(s) 7, 345
Hin1I GRCGYC 4 cut(s) 5, 213, 311, 356
Hin1II CATG 5 cut(s) 538, 813, 842, 871, 887
Hin6I GCGC 2 cut(s) 5, 343
HinP1I GCGC 2 cut(s) 5, 343
HinfI GANTC 2 cut(s) 511, 611
HpaII CCGG 1 cut(s) 210
HphI GGTGA 2 cut(s) 812, 872
Hpy166II GTNNAC 2 cut(s) 274, 761
Hpy188I TCNGA 5 cut(s) 69, 354, 382, 408, 474
Hpy188III TCNNGA 2 cut(s) 224, 717
Hpy8I GTNNAC 2 cut(s) 274, 761
Hpy99I CGWCG 2 cut(s) 358, 361
HpyAV CCTTC 3 cut(s) 266, 474, 771
HpyCH4III ACNGT 6 cut(s) 142, 172, 501, 711, 749, 907
HpyCH4IV ACGT 2 cut(s) 356, 427
HpyCH4V TGCA 9 cut(s) 50, 200, 448, 544, 658, 753, 813, 871, 910
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 135, 288, 317, 454
HpyF3I CTNAG 1 cut(s) 667
HpySE526I ACGT 2 cut(s) 356, 427
Hsp92I GRCGYC 4 cut(s) 5, 213, 311, 356
Hsp92II CATG 5 cut(s) 538, 813, 842, 871, 887
HspAI GCGC 2 cut(s) 5, 343
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 264, 347, 596
LmnI GCTCC 2 cut(s) 340, 719
Lsp1109I GCAGC 3 cut(s) 34, 94, 278
LweI GCATC 3 cut(s) 138, 520, 531
MaeI CTAG 2 cut(s) 567, 786
MaeII ACGT 2 cut(s) 356, 427
MaeIII GTNAC 3 cut(s) 423, 512, 860
MalI GATC 3 cut(s) 266, 349, 598
MboI GATC 3 cut(s) 264, 347, 596
MboII GAAGA 7 cut(s) 104, 198, 259, 422, 425, 506, 859
MflI RGATCY 2 cut(s) 264, 596
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 3 cut(s) 387, 676, 834
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 520
MmeI TCCRAC 1 cut(s) 377
Mph1103I ATGCAT 1 cut(s) 873
MslI CAYNNNNRTG 2 cut(s) 528, 539
MspA1I CMGCKG 1 cut(s) 85
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 491
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 5 cut(s) 53, 135, 288, 317, 454
NarI GGCGCC 1 cut(s) 5
NdeI CATATG 1 cut(s) 856
NdeII GATC 3 cut(s) 264, 347, 596
NheI GCTAGC 1 cut(s) 566
NlaIII CATG 5 cut(s) 538, 813, 842, 871, 887
NlaIV GGNNCC 2 cut(s) 6, 178
NmuCI GTSAC 2 cut(s) 512, 860
NsiI ATGCAT 1 cut(s) 873
NspI RCATGY 2 cut(s) 871, 887
PaeI GCATGC 1 cut(s) 871
PaeR7I CTCGAG 1 cut(s) 326
PciI ACATGT 1 cut(s) 883
PcsI WCGNNNNNNNCGW 1 cut(s) 433
PctI GAATGC 1 cut(s) 707
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 3 cut(s) 49, 84, 293
PleI GAGTC 1 cut(s) 519
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 519
PpuMI RGGWCCY 1 cut(s) 302
PscI ACATGT 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 190
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 6, 178
PspPI GGNCC 4 cut(s) 302, 382, 823, 890
PspPPI RGGWCCY 1 cut(s) 302
PspXI VCTCGAGB 1 cut(s) 326
PstI CTGCAG 2 cut(s) 52, 660
PsuI RGATCY 2 cut(s) 264, 596
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 444
RsaNI GTAC 1 cut(s) 443
RseI CAYNNNNRTG 2 cut(s) 528, 539
Rsr2I CGGWCCG 1 cut(s) 382
RsrII CGGWCCG 1 cut(s) 382
SatI GCNGC 3 cut(s) 48, 83, 292
Sau3AI GATC 3 cut(s) 264, 347, 596
Sau96I GGNCC 4 cut(s) 302, 382, 823, 890
SchI GAGTC 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 3 cut(s) 138, 520, 531
SfcI CTRYAG 2 cut(s) 48, 656
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 3 cut(s) 302, 382, 823
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 2 cut(s) 528, 539
SmlI CTYRAG 2 cut(s) 75, 326
SmoI CTYRAG 2 cut(s) 75, 326
SphI GCATGC 1 cut(s) 871
Sse9I AATT 3 cut(s) 387, 676, 834
SsiI CCGC 2 cut(s) 107, 127
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 772
SspMI CTAG 2 cut(s) 567, 786
StyD4I CCNGG 1 cut(s) 489
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 6 cut(s) 142, 172, 501, 711, 749, 907
TaiI ACGT 2 cut(s) 359, 430
TaqI TCGA 6 cut(s) 243, 327, 359, 400, 459, 683
TaqII GACCGA 1 cut(s) 399
TasI AATT 3 cut(s) 387, 676, 834
TatI WGTACW 1 cut(s) 442
TfiI GAWTC 1 cut(s) 611
TscAI CASTG 3 cut(s) 57, 157, 266
TseFI GTSAC 2 cut(s) 512, 860
TseI GCWGC 3 cut(s) 47, 82, 291
Tsp45I GTSAC 2 cut(s) 512, 860
TspDTI ATGAA 3 cut(s) 588, 624, 827
TspGWI ACGGA 2 cut(s) 618, 833
TspRI CASTG 3 cut(s) 57, 157, 266
Van91I CCANNNNNTGG 1 cut(s) 223
VpaK11BI GGWCC 3 cut(s) 302, 382, 823
XapI RAATTY 1 cut(s) 676
XceI RCATGY 2 cut(s) 871, 887
XhoI CTCGAG 1 cut(s) 326
XspI CTAG 2 cut(s) 567, 786
ZraI GACGTC 1 cut(s) 357
Zsp2I ATGCAT 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.