RLG00000010502

At3g49720-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000825
Physical Location & Seq
Reverse (-)
2168795 .. 2173281
4487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010502

Sequence Viewer

Length: 744 bp
ATGTCGAGGAGGCAAGCGAATGCGAACCTATCTTGGCGACTGGGAGATGCCGGAGGCGGTTGGCTCTCAGGCTCGTCCTATTCTAAATCAAGGTCTTCTCCCATCTTATATGTTGCTCTCATTGCCGTGGGAGCATTGCTTATTCTTGCCCATTCACACAGTGGCAGAGGTGGACTTGGTAATACTAGAGGGGCTATTAGCAGGGTTCAAGCAATTCATGTTTTGAAGAAAGCATATGGTGACAGCATGCATAAGGTTTTGCACGTTGGCCCTAATACTTGTACAGTGGTTTCTAAATTGTGTAGTGAGGAGGAAACTGAAGCCTGGGGTGTGGATCCGTGTGATGTAGAGGATGCTGATAGAAGTTGCAAAGCTCTGGTGCGCAAAGTCATAGTGTGTGTTGATGATATCAAGTATCCACTTCCGTACAGGCCAAAATCATTTTCTGTTGTCATTGTTTCAGATTCTTTGGATTATTTGTCTGAAAGATACCTTAACAAGACCCTTCCGAATCTGGTTAGGGTATCAGCTGATGGTGCTCTCCTGGCAAGCAGAGCTAAAGCAGCTGAGGTCTCCAAATTTGGTAGGGCGGCTAAATTGAGGAACACAGCCTGGTGGACTAAGTTTTTTGGGCAGGTTAGCTTAGAAGAGAACGAAGGTGCTGGCAAGAAGTTTAATATTGCTGCAACAAAGATGTCATTTGTCTCAAATTGTCAAGTTTTCCACCTCAGGTCATTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pentapeptide

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

9.55

Isoelectric Point (pI)

43.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 383
Acc36I ACCTGC 1 cut(s) 625
AciI CCGC 2 cut(s) 57, 590
AclWI GGATC 2 cut(s) 329, 342
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 339
AdeI CACNNNGTG 1 cut(s) 161
AfaI GTAC 2 cut(s) 283, 428
AgsI TTSAA 3 cut(s) 209, 226, 739
AjnI CCWGG 3 cut(s) 323, 543, 611
AjuI GAANNNNNNNTTGG 2 cut(s) 427, 459
AluBI AGCT 5 cut(s) 374, 530, 557, 566, 642
AluI AGCT 5 cut(s) 374, 530, 557, 566, 642
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 2 cut(s) 577, 709
AlwI GGATC 2 cut(s) 329, 342
AoxI GGCC 2 cut(s) 268, 431
ApeKI GCWGC 2 cut(s) 563, 683
ApoI RAATTY 1 cut(s) 578
AspLEI GCGC 1 cut(s) 384
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 251
AxyI CCTNAGG 1 cut(s) 728
BamHI GGATCC 1 cut(s) 334
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 575, 670
BccI CCATC 2 cut(s) 110, 527
BceAI ACGGC 1 cut(s) 110
BciT130I CCWGG 3 cut(s) 325, 545, 613
BciVI GTATCC 1 cut(s) 426
BcoDI GTCTC 2 cut(s) 577, 709
BfaI CTAG 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 625
BfuI GTATCC 1 cut(s) 426
BisI GCNGC 3 cut(s) 564, 591, 684
BlsI GCNGC 3 cut(s) 565, 592, 685
Bme1390I CCNGG 3 cut(s) 325, 545, 613
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 336
BmrFI CCNGG 3 cut(s) 325, 545, 613
BmrI ACTGGG 1 cut(s) 50
BmsI GCATC 2 cut(s) 37, 343
BmuI ACTGGG 1 cut(s) 50
BpiI GAAGAC 1 cut(s) 87
Bpu10I CCTNAGC 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 2 cut(s) 126, 324
Bse1I ACTGG 1 cut(s) 45
Bse21I CCTNAGG 1 cut(s) 728
Bse3DI GCAATG 2 cut(s) 120, 134
BseBI CCWGG 3 cut(s) 325, 545, 613
BseDI CCNNGG 2 cut(s) 126, 324
BseGI GGATG 1 cut(s) 358
BseMI GCAATG 2 cut(s) 120, 134
BseMII CTCAG 3 cut(s) 81, 558, 742
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 2 cut(s) 22, 323
BseXI GCAGC 2 cut(s) 575, 670
BshFI GGCC 2 cut(s) 270, 433
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 1 cut(s) 51
BsmAI GTCTC 2 cut(s) 577, 709
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 2 cut(s) 270, 433
Bso31I GGTCTC 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 541
Bsp1407I TGTACA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 334
BspACI CCGC 2 cut(s) 57, 590
BspANI GGCC 2 cut(s) 270, 433
BspCNI CTCAG 3 cut(s) 80, 559, 741
BspLI GGNNCC 1 cut(s) 336
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 2 cut(s) 329, 342
BspTNI GGTCTC 1 cut(s) 577
BsrDI GCAATG 2 cut(s) 120, 134
BsrGI TGTACA 1 cut(s) 281
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 126, 324
BssMI GATC 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 325, 545, 613
Bst4CI ACNGT 2 cut(s) 161, 286
Bst6I CTCTTC 1 cut(s) 642
BstAUI TGTACA 1 cut(s) 281
BstC8I GCNNGC 4 cut(s) 15, 248, 550, 664
BstDEI CTNAG 5 cut(s) 67, 567, 621, 643, 728
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 358
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 577, 709
BstMBI GATC 1 cut(s) 334
BstMWI GCNNNNNNNGC 6 cut(s) 122, 131, 536, 545, 554, 563
BstNI CCWGG 3 cut(s) 325, 545, 613
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 3 cut(s) 323, 543, 611
BstV1I GCAGC 2 cut(s) 575, 670
BstV2I GAAGAC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
Bsu36I CCTNAGG 1 cut(s) 728
BsuI GTATCC 1 cut(s) 426
BsuRI GGCC 2 cut(s) 270, 433
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 358
BtsIMutI CAGTG 2 cut(s) 166, 291
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 4 cut(s) 15, 248, 550, 664
CfoI GCGC 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 2 cut(s) 282, 427
CviAII CATG 2 cut(s) 218, 247
CviQI GTAC 2 cut(s) 282, 427
DdeI CTNAG 5 cut(s) 67, 567, 621, 643, 728
DpnI GATC 1 cut(s) 336
DpnII GATC 1 cut(s) 334
DraIII CACNNNGTG 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 642
EarI CTCTTC 1 cut(s) 642
Eco31I GGTCTC 1 cut(s) 577
Eco32I GATATC 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 339
Eco81I CCTNAGG 1 cut(s) 728
EcoRII CCWGG 3 cut(s) 323, 543, 611
EcoRV GATATC 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 252
FaeI CATG 2 cut(s) 221, 250
FaiI YATR 8 cut(s) 109, 111, 219, 235, 237, 248, 252, 392
FatI CATG 2 cut(s) 217, 246
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 564, 591, 684
FokI GGATG 1 cut(s) 365
Fsp4HI GCNGC 3 cut(s) 564, 591, 684
FspBI CTAG 1 cut(s) 186
FspI TGCGCA 1 cut(s) 383
GlaI GCGC 1 cut(s) 383
GluI GCNGC 3 cut(s) 564, 591, 684
HaeIII GGCC 2 cut(s) 270, 433
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 384
Hin1II CATG 2 cut(s) 221, 250
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 2 cut(s) 464, 511
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 2 cut(s) 173, 618
Hpy188I TCNGA 3 cut(s) 463, 484, 510
Hpy8I GTNNAC 2 cut(s) 173, 618
HpyAV CCTTC 2 cut(s) 515, 650
HpyCH4III ACNGT 2 cut(s) 161, 286
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 4 cut(s) 250, 262, 369, 686
HpyF10VI GCNNNNNNNGC 6 cut(s) 122, 131, 536, 545, 554, 563
HpyF3I CTNAG 5 cut(s) 67, 567, 621, 643, 728
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 2 cut(s) 221, 250
HspAI GCGC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 334
LmnI GCTCC 1 cut(s) 131
Lsp1109I GCAGC 2 cut(s) 575, 670
LweI GCATC 2 cut(s) 37, 343
MaeI CTAG 1 cut(s) 186
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 336
MboI GATC 1 cut(s) 334
MboII GAAGA 3 cut(s) 87, 238, 659
MfeI CAATTG 1 cut(s) 739
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 6 cut(s) 213, 296, 578, 596, 709, 739
Mph1103I ATGCAT 1 cut(s) 252
MseI TTAA 2 cut(s) 495, 675
MslI CAYNNNNRTG 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 530, 566
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 3 cut(s) 325, 545, 613
MunI CAATTG 1 cut(s) 739
Mva1269I GAATGC 1 cut(s) 25
MvaI CCWGG 3 cut(s) 325, 545, 613
MwoI GCNNNNNNNGC 6 cut(s) 122, 131, 536, 545, 554, 563
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 334
NlaIII CATG 2 cut(s) 221, 250
NlaIV GGNNCC 1 cut(s) 336
NmuCI GTSAC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 252
NspI RCATGY 1 cut(s) 250
PaeI GCATGC 1 cut(s) 250
PctI GAATGC 1 cut(s) 25
PfeI GAWTC 2 cut(s) 464, 511
PkrI GCNGC 3 cut(s) 565, 592, 685
Psp6I CCWGG 3 cut(s) 323, 543, 611
PspGI CCWGG 3 cut(s) 323, 543, 611
PspN4I GGNNCC 1 cut(s) 336
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 2 cut(s) 530, 566
RsaI GTAC 2 cut(s) 283, 428
RsaNI GTAC 2 cut(s) 282, 427
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 2 cut(s) 495, 675
SatI GCNGC 3 cut(s) 564, 591, 684
Sau3AI GATC 1 cut(s) 334
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 3 cut(s) 325, 545, 613
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 2 cut(s) 37, 343
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 250
Sse9I AATT 6 cut(s) 213, 296, 578, 596, 709, 739
SsiI CCGC 2 cut(s) 57, 590
SspI AATATT 1 cut(s) 679
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 3 cut(s) 323, 543, 611
TaaI ACNGT 2 cut(s) 161, 286
TaiI ACGT 1 cut(s) 267
TaqI TCGA 1 cut(s) 5
TasI AATT 6 cut(s) 213, 296, 578, 596, 709, 739
TatI WGTACW 1 cut(s) 281
TauI GCSGC 1 cut(s) 593
TfiI GAWTC 2 cut(s) 464, 511
Tru1I TTAA 2 cut(s) 495, 675
Tru9I TTAA 2 cut(s) 495, 675
TscAI CASTG 2 cut(s) 166, 291
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 2 cut(s) 563, 683
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 206
TspGWI ACGGA 2 cut(s) 327, 414
TspRI CASTG 2 cut(s) 166, 291
XapI RAATTY 1 cut(s) 578
XceI RCATGY 1 cut(s) 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XspI CTAG 1 cut(s) 186
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.