Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

18724905 .. 18727968

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1114200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCGAGGAGGCCAGTAAATCCTTCTAGACGCATTGGTGACGGTGGAAGTATACCATTTGTGGGTGCGGTGCAATCCAAAGCACGCTCTTCACCTCTACTGTCCATAGGACTTGTGCTTGTGGGTGCAATTCTTCTCGTCTTCTACACTTTTAGCGGGTCAGGTGGCCGGAGCACTAAGGAGGCTGTAATTAAACTTGAAGGTGGTGTTTCGTGTACGTTTGAAGTTCAGAGAGCAATACCTATACTAAAGAAAGCATATGGTGATAGCATGCGTAAGGTGTTGCATGTGGGCCCTGAAACCTGTTCAGTGGTATCTAAATTACTGAAAGAGGAGGATACTGAAGCCTGGGGTGTGGAGCCATATGACTTAGAAGATGCTGATGCAGGTTGCAAGAGTCTTGTGAGCAAAGGCATTGTGCGCGCTGCTGATATAAAGTTTCCTTTGCCATACCGGCCAAAATCGTTTTCTCTTGTAATTGCATCGGATGCATTAGATTACTTGTCTCCGAAGTACCTCAACAGAACTCTTCCAGAGTTGGCGAGGGTATCTGCTGATGGTGTTGTTATATTTACGGGTTATCCAAGTCAGCATAAAGCTAAAGTTGCAGAGCCATCCAAATTTGGCCGTCCAGCGAAATTGCGAAGCTCGTCATGGTGGATAAGGTACTTTGTTCAAACAAGCTTAGAAGAGAACGAAGTAGCCTCAAAGAAGTTTGAACAGGCTTCACTAAAGAGGTCTTACACACCTACGTGCCAAGTTTTCCACCTCAAGTCATACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

262

Amino Acids

28.68

Weight (kDa)

9.59

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	423
AciI	CCGC	2 cut(s)	68, 156
AcoI	YGGCCR	3 cut(s)	166, 455, 625
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	3 cut(s)	217, 515, 668
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	200, 224, 677, 719
AjnI	CCWGG	1 cut(s)	347
AjuI	GAANNNNNNNTTGG	2 cut(s)	451, 483
AleI	CACNNNNGTG	1 cut(s)	751
AluBI	AGCT	3 cut(s)	599, 648, 684
AluI	AGCT	3 cut(s)	599, 648, 684
Alw21I	GWGCWC	1 cut(s)	176
Alw26I	GTCTC	1 cut(s)	510
AoxI	GGCC	5 cut(s)	11, 166, 292, 455, 625
ApaI	GGGCCC	1 cut(s)	296
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	423, 425
AspS9I	GGNCC	2 cut(s)	292, 293
AsuHPI	GGTGA	3 cut(s)	50, 84, 275
BaeGI	GKGCMC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	412
BccI	CCATC	2 cut(s)	551, 622
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	1 cut(s)	349
BciVI	GTATCC	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	510
BfaI	CTAG	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	331
BglI	GCCNNNNNGGC	1 cut(s)	454
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	292, 293
BmiI	GGNNCC	2 cut(s)	294, 360
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	4 cut(s)	367, 373, 478, 491
BpiI	GAAGAC	1 cut(s)	133
BpuEI	CTTGAG	1 cut(s)	755
BsaAI	YACGTR	1 cut(s)	753
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	493, 614
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseNI	ACTGG	1 cut(s)	14
BsePI	GCGCGC	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	22, 347
BseSI	GKGCMC	1 cut(s)	296
BseXI	GCAGC	1 cut(s)	412
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	5 cut(s)	13, 168, 294, 457, 627
BsiHKAI	GWGCWC	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	169, 454
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	510
BsnI	GGCC	5 cut(s)	13, 168, 294, 457, 627
Bsp120I	GGGCCC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	176, 296
BspACI	CCGC	2 cut(s)	68, 156
BspANI	GGCC	5 cut(s)	13, 168, 294, 457, 627
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	2 cut(s)	294, 360
BspMI	ACCTGC	1 cut(s)	377
BspQI	GCTCTTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	453
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	348
BssHII	GCGCGC	1 cut(s)	421
BssNAI	GTATAC	1 cut(s)	53
Bst1107I	GTATAC	1 cut(s)	53
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	44, 102, 782
Bst6I	CTCTTC	3 cut(s)	94, 534, 684
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	753
BstC8I	GCNNGC	3 cut(s)	85, 272, 423
BstDEI	CTNAG	3 cut(s)	177, 370, 685
BstF5I	GGATG	2 cut(s)	493, 614
BstFNI	CGCG	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	423, 425
BstMAI	GTCTC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	4 cut(s)	420, 454, 488, 605
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	274, 290
BstSCI	CCNGG	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	296
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	133
BstZ17I	GTATAC	1 cut(s)	53
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	5 cut(s)	13, 168, 294, 457, 627
BtsCI	GGATG	2 cut(s)	493, 614
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	377
Cac8I	GCNNGC	3 cut(s)	85, 272, 423
CfoI	GCGC	2 cut(s)	423, 425
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	2 cut(s)	292, 293
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	3 cut(s)	216, 514, 667
CviAII	CATG	3 cut(s)	271, 287, 654
CviQI	GTAC	3 cut(s)	216, 514, 667
DdeI	CTNAG	3 cut(s)	177, 370, 685
EaeI	YGGCCR	3 cut(s)	166, 455, 625
Eam1104I	CTCTTC	3 cut(s)	94, 534, 684
EarI	CTCTTC	3 cut(s)	94, 534, 684
Eco24I	GRGCYC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	363
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	3 cut(s)	274, 290, 657
FatI	CATG	3 cut(s)	270, 286, 653
FauI	CCCGC	1 cut(s)	149
FauNDI	CATATG	2 cut(s)	259, 364
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	2 cut(s)	500, 601
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	2 cut(s)	422, 424
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	5 cut(s)	13, 168, 294, 457, 627
HapII	CCGG	2 cut(s)	169, 454
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	2 cut(s)	423, 425
Hin1II	CATG	3 cut(s)	274, 290, 657
Hin6I	GCGC	2 cut(s)	421, 423
HinP1I	GCGC	2 cut(s)	421, 423
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	1 cut(s)	397
HpaII	CCGG	2 cut(s)	169, 454
HphI	GGTGA	3 cut(s)	50, 84, 275
Hpy166II	GTNNAC	2 cut(s)	53, 216
Hpy188I	TCNGA	3 cut(s)	231, 487, 510
Hpy188III	TCNNGA	2 cut(s)	27, 533
Hpy8I	GTNNAC	2 cut(s)	53, 216
HpyAV	CCTTC	2 cut(s)	33, 194
HpyCH4III	ACNGT	3 cut(s)	44, 102, 782
HpyCH4IV	ACGT	2 cut(s)	218, 752
HpyCH4V	TGCA	8 cut(s)	73, 128, 286, 386, 393, 482, 491, 608
HpyF10VI	GCNNNNNNNGC	4 cut(s)	420, 454, 488, 605
HpyF3I	CTNAG	3 cut(s)	177, 370, 685
HpySE526I	ACGT	2 cut(s)	218, 752
Hsp92II	CATG	3 cut(s)	274, 290, 657
HspAI	GCGC	2 cut(s)	421, 423
LguI	GCTCTTC	1 cut(s)	94
LmnI	GCTCC	2 cut(s)	171, 358
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	4 cut(s)	367, 373, 478, 491
MaeI	CTAG	1 cut(s)	27
MaeII	ACGT	2 cut(s)	218, 752
MaeIII	GTNAC	1 cut(s)	38
MboII	GAAGA	6 cut(s)	81, 125, 133, 386, 521, 701
MhlI	GDGCHC	2 cut(s)	176, 296
MluCI	AATT	6 cut(s)	129, 189, 320, 477, 620, 638
MlyI	GAGTC	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	493
MseI	TTAA	2 cut(s)	192, 784
MslI	CAYNNNNRTG	1 cut(s)	751
MspI	CCGG	2 cut(s)	169, 454
MspR9I	CCNGG	1 cut(s)	349
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	4 cut(s)	420, 454, 488, 605
NdeI	CATATG	2 cut(s)	259, 364
NlaIII	CATG	3 cut(s)	274, 290, 657
NlaIV	GGNNCC	2 cut(s)	294, 360
NmuCI	GTSAC	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	2 cut(s)	274, 290
OliI	CACNNNNGTG	1 cut(s)	751
PaeI	GCATGC	1 cut(s)	274
PauI	GCGCGC	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	427
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Ppu21I	YACGTR	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	2 cut(s)	294, 360
PspOMI	GGGCCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	292, 293
PteI	GCGCGC	1 cut(s)	421
RsaI	GTAC	3 cut(s)	217, 515, 668
RsaNI	GTAC	3 cut(s)	216, 514, 667
RseI	CAYNNNNRTG	1 cut(s)	751
SapI	GCTCTTC	1 cut(s)	94
SaqAI	TTAA	2 cut(s)	192, 784
SatI	GCNGC	1 cut(s)	426
Sau96I	GGNCC	2 cut(s)	292, 293
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	349
SduI	GDGCHC	2 cut(s)	176, 296
SfaNI	GCATC	4 cut(s)	367, 373, 478, 491
SmiMI	CAYNNNNRTG	1 cut(s)	751
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	6 cut(s)	129, 189, 320, 477, 620, 638
SsiI	CCGC	2 cut(s)	68, 156
SspMI	CTAG	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	347
TaaI	ACNGT	3 cut(s)	44, 102, 782
TaiI	ACGT	2 cut(s)	221, 755
TaqI	TCGA	1 cut(s)	5
TasI	AATT	6 cut(s)	129, 189, 320, 477, 620, 638
Tru1I	TTAA	2 cut(s)	192, 784
Tru9I	TTAA	2 cut(s)	192, 784
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	38
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	620
XbaI	TCTAGA	1 cut(s)	26
XceI	RCATGY	2 cut(s)	274, 290
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	1 cut(s)	27
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.