Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Forward (+)

21129269 .. 21132636

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG219100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCACAAAGTTCTGCACATTGGCCCTGATACTTGTTCAGTTGTCTCTGCGTTGTTGAAAGAAGAGGAAACTGAAGCATGGGGAGTGGAACCATATGAGCTAGAGGATGCTGATAGCCATTGCAAGAGTCTTGTGCGTAAAGGCATTGTGCGTGTGGCTGACATTAAGTTCCCTCTACCATACAAAGCAAAGTCTTTCTCCCTTGTGATTGTTTCAGATGCTTTGGATTACCTCTCCCCAAAATATCTGAATAGGACTCTTCCAGAAATTGCAAGAGTGTCTATTGATGGTCTTGTTATTTTTTCAGGTACCATCCTTTTATTTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW

Protein Analysis

109

Amino Acids

12.13

Weight (kDa)

5.54

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	93
AfaI	GTAC	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	58
AluBI	AGCT	1 cut(s)	100
AluI	AGCT	1 cut(s)	100
Alw26I	GTCTC	1 cut(s)	49
AoxI	GGCC	1 cut(s)	22
Asp718I	GGTACC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	308
BccI	CCATC	2 cut(s)	281, 320
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	90, 310
BmsI	GCATC	2 cut(s)	97, 208
Bse3DI	GCAATG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	112, 312
BseMI	GCAATG	1 cut(s)	118
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	308
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	24
BspANI	GGCC	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	90, 310
BspT107I	GGYRCC	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	118
Bst6I	CTCTTC	2 cut(s)	57, 264
BstF5I	GGATG	2 cut(s)	112, 312
BstMAI	GTCTC	1 cut(s)	49
BstSFI	CTRYAG	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	112, 312
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	1 cut(s)	78
CviJI	RGCY	4 cut(s)	24, 100, 117, 158
CviKI_1	RGCY	4 cut(s)	24, 100, 117, 158
CviQI	GTAC	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	57, 264
EarI	CTCTTC	2 cut(s)	57, 264
Eco57I	CTGAAG	1 cut(s)	93
FaeI	CATG	1 cut(s)	81
FaiI	YATR	5 cut(s)	79, 94, 96, 181, 328
FatI	CATG	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	94
FokI	GGATG	2 cut(s)	119, 299
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	24
Hin1II	CATG	1 cut(s)	81
HinfI	GANTC	2 cut(s)	127, 256
Hpy188I	TCNGA	2 cut(s)	217, 249
Hpy188III	TCNNGA	1 cut(s)	263
HpyCH4V	TGCA	4 cut(s)	4, 16, 123, 272
Hsp92II	CATG	1 cut(s)	81
KpnI	GGTACC	1 cut(s)	312
LpnPI	CCDG	3 cut(s)	39, 276, 291
LweI	GCATC	2 cut(s)	97, 208
MaeI	CTAG	1 cut(s)	101
MboII	GAAGA	2 cut(s)	74, 251
MluCI	AATT	1 cut(s)	267
MlyI	GAGTC	2 cut(s)	136, 250
MnlI	CCTC	4 cut(s)	58, 97, 183, 242
MseI	TTAA	1 cut(s)	165
NdeI	CATATG	1 cut(s)	94
NlaIII	CATG	1 cut(s)	81
NlaIV	GGNNCC	2 cut(s)	90, 310
PleI	GAGTC	2 cut(s)	135, 250
PpsI	GAGTC	2 cut(s)	135, 250
PspN4I	GGNNCC	2 cut(s)	90, 310
PspPI	GGNCC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	2 cut(s)	136, 250
SetI	ASST	3 cut(s)	102, 234, 310
SfaNI	GCATC	2 cut(s)	97, 208
SfcI	CTRYAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	101
TasI	AATT	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.