Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

63216059 .. 63219302

Gene Structure 3244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015215

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGCAATCTGAATCGCGCCCCCCCCCCCCCCCAGATCTCATAATCCAGCTTTTCCCGCATCATTTCCTTAAGGCCCACTGCTATTATATAAGCATGTCCAGGAGGCCAGTAAATCCTTCTAGGCGCATTGGTGATGGTGGAAGCATCCCCTTTGTGGGTGCGGTGCAGGCCAAAGCACGCTCATCACCTTTACTGTCTGTAGCGCTTGTGCTTGTGGGTACAATTCTTCTTGTCTGCTATGCTTTTAGCGGGTCAGGTGGAGCGAGTAGTAAAGAGGCTGTGATTAAACTTGAAGGTGGTGTTTCTTGTACATATGAAGTTCAGAGAGCAATACCTATACTAAAGAAGGCATATGGTGATAGCATGCATAAGGTATTGCATGTAGGCCCTGAAACGTGTTCAGTGGTATCTAAATTATTAAAAGAGGAGGATACTGAAGCCTGGGGTGTGGAACCATATGACTTGGAAGATGTTGATGCAAATTGCAAGAGTCTTGTGAGCAAAGGCATTGTGCGTGCTGCTGATATAAAGTTTCCTCTGCCATACCGGGCAAAATCATTTTCTCTGGTAATAGTATCAGATGCATTAGATTACTTGTCTCCGAAGTACCTCAACAGAACTCTTCCAGAGTTAGCAAGGGTATCTGCTGATGGCGTTATTATATTCTCTGGTTATCCAGGTCAACAAAGAGCTAAAGTTGCAGAGCTATCCAAATTTGGCCGTCCAGCCAAATGGCGAAGCTCGTCCTGGTGGATAAGATTTTTTGTTCAAACAAGCTTAGAAGAGAATGAAGCAGCCTCGAAGAAGTTTGAACAGGCTTCATTAAAGAGATCTTATAAGCCAGAATGTCAAGTTTTCCACTTAAGGTCATACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

293

Amino Acids

32.35

Weight (kDa)

9.26

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	837
AccII	CGCG	1 cut(s)	16
AciI	CCGC	3 cut(s)	56, 161, 249
AcoI	YGGCCR	1 cut(s)	718
AcsI	RAATTY	1 cut(s)	713
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	3 cut(s)	220, 310, 608
AfeI	AGCGCT	1 cut(s)	204
AfiI	CCNNNNNNNGG	2 cut(s)	154, 155
AflII	CTTAAG	2 cut(s)	68, 862
AflIII	ACRYGT	1 cut(s)	395
AgsI	TTSAA	3 cut(s)	293, 770, 812
AjnI	CCWGG	4 cut(s)	98, 440, 676, 746
AluBI	AGCT	5 cut(s)	49, 692, 706, 741, 777
AluI	AGCT	5 cut(s)	49, 692, 706, 741, 777
Alw26I	GTCTC	1 cut(s)	603
Aor51HI	AGCGCT	1 cut(s)	204
AoxI	GGCC	5 cut(s)	72, 104, 168, 385, 718
ApeKI	GCWGC	2 cut(s)	518, 794
ApoI	RAATTY	1 cut(s)	713
AspLEI	GCGC	3 cut(s)	18, 126, 205
AspS9I	GGNCC	2 cut(s)	73, 386
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	3 cut(s)	143, 177, 368
BbvI	GCAGC	2 cut(s)	505, 806
BccI	CCATC	2 cut(s)	128, 644
BceAI	ACGGC	1 cut(s)	705
BciT130I	CCWGG	4 cut(s)	100, 442, 678, 748
BciVI	GTATCC	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	206
BfrI	CTTAAG	2 cut(s)	68, 862
BfuI	GTATCC	1 cut(s)	424
BglII	AGATCT	2 cut(s)	34, 830
BisI	GCNGC	2 cut(s)	519, 795
BlsI	GCNGC	2 cut(s)	520, 796
Bme1390I	CCNGG	5 cut(s)	100, 442, 548, 678, 748
BmgT120I	GGNCC	2 cut(s)	73, 386
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	5 cut(s)	100, 442, 548, 678, 748
BmsI	GCATC	4 cut(s)	67, 153, 466, 571
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 155
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	4 cut(s)	100, 442, 678, 748
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	154, 155
BseNI	ACTGG	1 cut(s)	107
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	2 cut(s)	505, 806
BsgI	GTGCAG	1 cut(s)	185
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	5 cut(s)	74, 106, 170, 387, 720
BsiSI	CCGG	1 cut(s)	547
BslI	CCNNNNNNNGG	2 cut(s)	154, 155
BsmAI	GTCTC	1 cut(s)	603
BsnI	GGCC	5 cut(s)	74, 106, 170, 387, 720
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	34, 830
BspACI	CCGC	3 cut(s)	56, 161, 249
BspANI	GGCC	5 cut(s)	74, 106, 170, 387, 720
BspFNI	CGCG	1 cut(s)	16
BspLI	GGNNCC	1 cut(s)	453
BspTI	CTTAAG	2 cut(s)	68, 862
BsrGI	TGTACA	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	34, 830
Bst2UI	CCWGG	4 cut(s)	100, 442, 678, 748
Bst4CI	ACNGT	1 cut(s)	195
Bst6I	CTCTTC	2 cut(s)	627, 777
BstAFI	CTTAAG	2 cut(s)	68, 862
BstAUI	TGTACA	1 cut(s)	308
BstC8I	GCNNGC	4 cut(s)	168, 178, 365, 516
BstDEI	CTNAG	1 cut(s)	778
BstF5I	GGATG	1 cut(s)	144
BstFNI	CGCG	1 cut(s)	16
BstH2I	RGCGCY	1 cut(s)	206
BstHHI	GCGC	3 cut(s)	18, 126, 205
BstKTI	GATC	2 cut(s)	37, 833
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	2 cut(s)	34, 830
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 167, 698
BstNI	CCWGG	4 cut(s)	100, 442, 678, 748
BstNSI	RCATGY	3 cut(s)	97, 367, 383
BstSCI	CCNGG	5 cut(s)	98, 440, 546, 676, 746
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	505, 806
BstX2I	RGATCY	2 cut(s)	34, 830
BstXI	CCANNNNNNTGG	1 cut(s)	732
BstYI	RGATCY	2 cut(s)	34, 830
BsuI	GTATCC	1 cut(s)	424
BsuRI	GGCC	5 cut(s)	74, 106, 170, 387, 720
BtsCI	GGATG	1 cut(s)	144
BtsI	GCAGTG	1 cut(s)	76
BtsIMutI	CAGTG	2 cut(s)	76, 408
Cac8I	GCNNGC	4 cut(s)	168, 178, 365, 516
CfoI	GCGC	3 cut(s)	18, 126, 205
Cfr13I	GGNCC	2 cut(s)	73, 386
Csp6I	GTAC	3 cut(s)	219, 309, 607
CviAII	CATG	3 cut(s)	94, 364, 380
CviQI	GTAC	3 cut(s)	219, 309, 607
DdeI	CTNAG	1 cut(s)	778
DpnI	GATC	2 cut(s)	36, 832
DpnII	GATC	2 cut(s)	34, 830
EaeI	YGGCCR	1 cut(s)	718
Eam1104I	CTCTTC	2 cut(s)	627, 777
EarI	CTCTTC	2 cut(s)	627, 777
Eco47III	AGCGCT	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	386
EcoRII	CCWGG	4 cut(s)	98, 440, 676, 746
EcoT22I	ATGCAT	2 cut(s)	369, 586
FaeI	CATG	3 cut(s)	97, 367, 383
FatI	CATG	3 cut(s)	93, 363, 379
FauI	CCCGC	2 cut(s)	63, 242
FauNDI	CATATG	3 cut(s)	313, 352, 457
Fnu4HI	GCNGC	2 cut(s)	519, 795
FokI	GGATG	1 cut(s)	131
Fsp4HI	GCNGC	2 cut(s)	519, 795
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	3 cut(s)	17, 125, 204
GluI	GCNGC	2 cut(s)	519, 795
HaeII	RGCGCY	1 cut(s)	206
HaeIII	GGCC	5 cut(s)	74, 106, 170, 387, 720
HapII	CCGG	1 cut(s)	547
HhaI	GCGC	3 cut(s)	18, 126, 205
Hin1II	CATG	3 cut(s)	97, 367, 383
Hin6I	GCGC	3 cut(s)	16, 124, 203
HinP1I	GCGC	3 cut(s)	16, 124, 203
HincII	GTYRAC	1 cut(s)	683
HindII	GTYRAC	1 cut(s)	683
HindIII	AAGCTT	1 cut(s)	775
HinfI	GANTC	2 cut(s)	11, 490
HpaII	CCGG	1 cut(s)	547
HphI	GGTGA	3 cut(s)	143, 177, 368
Hpy166II	GTNNAC	1 cut(s)	683
Hpy188I	TCNGA	4 cut(s)	10, 324, 580, 603
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	1 cut(s)	683
HpyAV	CCTTC	3 cut(s)	126, 287, 340
HpyCH4III	ACNGT	1 cut(s)	195
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	8 cut(s)	4, 166, 367, 379, 479, 486, 584, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 167, 698
HpyF3I	CTNAG	1 cut(s)	778
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	97, 367, 383
HspAI	GCGC	3 cut(s)	16, 124, 203
Kzo9I	GATC	2 cut(s)	34, 830
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	2 cut(s)	505, 806
LweI	GCATC	4 cut(s)	67, 153, 466, 571
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	395
MalI	GATC	2 cut(s)	36, 832
MboI	GATC	2 cut(s)	34, 830
MboII	GAAGA	5 cut(s)	218, 479, 614, 794, 814
MflI	RGATCY	2 cut(s)	34, 830
MluCI	AATT	4 cut(s)	222, 413, 481, 713
MlyI	GAGTC	1 cut(s)	499
MnlI	CCTC	7 cut(s)	96, 268, 418, 421, 546, 620, 808
Mph1103I	ATGCAT	2 cut(s)	369, 586
MseI	TTAA	5 cut(s)	69, 285, 419, 824, 863
MspCI	CTTAAG	2 cut(s)	68, 862
MspI	CCGG	1 cut(s)	547
MspR9I	CCNGG	5 cut(s)	100, 442, 548, 678, 748
MvaI	CCWGG	4 cut(s)	100, 442, 678, 748
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	3 cut(s)	55, 167, 698
NciI	CCSGG	1 cut(s)	548
NdeI	CATATG	3 cut(s)	313, 352, 457
NdeII	GATC	2 cut(s)	34, 830
NlaIII	CATG	3 cut(s)	97, 367, 383
NlaIV	GGNNCC	1 cut(s)	453
NsiI	ATGCAT	2 cut(s)	369, 586
NspI	RCATGY	3 cut(s)	97, 367, 383
PaeI	GCATGC	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	11
PfoI	TCCNGGA	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	520, 796
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	837
Psp6I	CCWGG	4 cut(s)	98, 440, 676, 746
PspGI	CCWGG	4 cut(s)	98, 440, 676, 746
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	73, 386
PsuI	RGATCY	2 cut(s)	34, 830
RsaI	GTAC	3 cut(s)	220, 310, 608
RsaNI	GTAC	3 cut(s)	219, 309, 607
SaqAI	TTAA	5 cut(s)	69, 285, 419, 824, 863
SatI	GCNGC	2 cut(s)	519, 795
Sau3AI	GATC	2 cut(s)	34, 830
Sau96I	GGNCC	2 cut(s)	73, 386
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	5 cut(s)	100, 442, 548, 678, 748
SfaNI	GCATC	4 cut(s)	67, 153, 466, 571
SfcI	CTRYAG	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	68, 862
SmoI	CTYRAG	2 cut(s)	68, 862
SphI	GCATGC	1 cut(s)	367
Sse9I	AATT	4 cut(s)	222, 413, 481, 713
SsiI	CCGC	3 cut(s)	56, 161, 249
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	5 cut(s)	98, 440, 546, 676, 746
TaaI	ACNGT	1 cut(s)	195
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	800
TasI	AATT	4 cut(s)	222, 413, 481, 713
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	5 cut(s)	69, 285, 419, 824, 863
Tru9I	TTAA	5 cut(s)	69, 285, 419, 824, 863
TscAI	CASTG	2 cut(s)	83, 408
TseI	GCWGC	2 cut(s)	518, 794
TspDTI	ATGAA	3 cut(s)	330, 804, 810
TspRI	CASTG	2 cut(s)	83, 408
Vha464I	CTTAAG	2 cut(s)	68, 862
XapI	RAATTY	1 cut(s)	713
XceI	RCATGY	3 cut(s)	97, 367, 383
XspI	CTAG	1 cut(s)	120
Zsp2I	ATGCAT	2 cut(s)	369, 586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.