Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Reverse (-)

6276205 .. 6286118

Gene Structure 9914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1076600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTTTGGTGGAGGCCATCTTAAAGGGGCTGTTAGCAGGGTTGAAGGTGATTACTCATGCACGGTCGAGGTTCAACGAGCAATTTCCATCTTGAAGAAAGCGTACGGAGACAGCATGCATAAGGTTTTGCACGTTGGCCTTGATACTTGTACTGTGGTTTCTAAATTGCTGAGTGAGGAAGAAACTGAAGCCTGGGGTGTGGAACCCTACGATGTAGAGGATGCTGGTAGAAGTTGTAAGACCCTCCCGGATTTGGCAAGGGTGTCGGCCGACGGGCTTGTGGTCTTTACAGGCTATCCTCGCAAGCAGAGAGCTAAAGCTGCTGAGGTTTCCAAATTTGGGAGGGCGGCTAAATTAAGGAGCACATCCTGGTGGTCTAAGTTTTTTGGTCAGATTAGCTTAGAAGAGAATGATGATGCCGCCAAGAAGTTAAATGAGGCAGCAACAAAGATGTCATATGTCTCAAACTGCCAAGTTTTCCACCTCAGGTCATTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

167

Amino Acids

18.3

Weight (kDa)

8.31

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	347, 420
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	2 cut(s)	104, 151
AfiI	CCNNNNNNNGG	2 cut(s)	253, 339
AgsI	TTSAA	4 cut(s)	44, 74, 94, 496
AjnI	CCWGG	2 cut(s)	191, 368
AluBI	AGCT	3 cut(s)	314, 320, 399
AluI	AGCT	3 cut(s)	314, 320, 399
Alw21I	GWGCWC	1 cut(s)	365
Alw26I	GTCTC	2 cut(s)	102, 466
AoxI	GGCC	3 cut(s)	13, 136, 267
ApeKI	GCWGC	2 cut(s)	320, 440
ApoI	RAATTY	1 cut(s)	335
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	59
AxyI	CCTNAGG	1 cut(s)	485
BarI	GAAGNNNNNNTAC	2 cut(s)	86, 118
Bbv12I	GWGCWC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	307, 452
BccI	CCATC	2 cut(s)	24, 95
BcgI	CGANNNNNNTGC	2 cut(s)	246, 280
BciT130I	CCWGG	2 cut(s)	193, 370
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	2 cut(s)	102, 466
BisI	GCNGC	4 cut(s)	321, 348, 420, 441
BlsI	GCNGC	4 cut(s)	322, 349, 421, 442
Bme1390I	CCNGG	3 cut(s)	193, 248, 370
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	3 cut(s)	193, 248, 370
BmsI	GCATC	2 cut(s)	211, 406
Bpu10I	CCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 339
Bse21I	CCTNAGG	1 cut(s)	485
BseBI	CCWGG	2 cut(s)	193, 370
BseDI	CCNNGG	1 cut(s)	192
BseGI	GGATG	2 cut(s)	226, 365
BseLI	CCNNNNNNNGG	2 cut(s)	253, 339
BseMII	CTCAG	3 cut(s)	161, 315, 499
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	307, 452
Bsh1285I	CGRYCG	2 cut(s)	66, 270
BshFI	GGCC	3 cut(s)	15, 138, 269
BsiEI	CGRYCG	2 cut(s)	66, 270
BsiHKAI	GWGCWC	1 cut(s)	365
BsiSI	CCGG	1 cut(s)	248
BsiWI	CGTACG	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	253, 339
BsmAI	GTCTC	2 cut(s)	102, 466
BsnI	GGCC	3 cut(s)	15, 138, 269
Bsp1286I	GDGCHC	1 cut(s)	365
BspACI	CCGC	2 cut(s)	347, 420
BspANI	GGCC	3 cut(s)	15, 138, 269
BspCNI	CTCAG	3 cut(s)	162, 316, 498
BspLI	GGNNCC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	193, 370
Bst4CI	ACNGT	2 cut(s)	64, 154
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	2 cut(s)	116, 305
BstDEI	CTNAG	5 cut(s)	170, 324, 378, 400, 485
BstF5I	GGATG	2 cut(s)	226, 365
BstMAI	GTCTC	2 cut(s)	102, 466
BstMCI	CGRYCG	2 cut(s)	66, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 320
BstNI	CCWGG	2 cut(s)	193, 370
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	3 cut(s)	191, 246, 368
BstV1I	GCAGC	2 cut(s)	307, 452
BstZI	CGGCCG	1 cut(s)	267
Bsu36I	CCTNAGG	1 cut(s)	485
BsuRI	GGCC	3 cut(s)	15, 138, 269
BtsCI	GGATG	2 cut(s)	226, 365
Cac8I	GCNNGC	2 cut(s)	116, 305
Csp6I	GTAC	2 cut(s)	103, 150
CviAII	CATG	2 cut(s)	57, 115
CviQI	GTAC	2 cut(s)	103, 150
DdeI	CTNAG	5 cut(s)	170, 324, 378, 400, 485
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
EclXI	CGGCCG	1 cut(s)	267
Eco52I	CGGCCG	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	191, 368
EcoT22I	ATGCAT	1 cut(s)	120
FaeI	CATG	2 cut(s)	60, 118
FaiI	YATR	5 cut(s)	58, 116, 120, 457, 459
FatI	CATG	2 cut(s)	56, 114
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	4 cut(s)	321, 348, 420, 441
FokI	GGATG	2 cut(s)	233, 352
Fsp4HI	GCNGC	4 cut(s)	321, 348, 420, 441
GluI	GCNGC	4 cut(s)	321, 348, 420, 441
HaeIII	GGCC	3 cut(s)	15, 138, 269
HapII	CCGG	1 cut(s)	248
Hin1II	CATG	2 cut(s)	60, 118
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	393
Hpy188III	TCNNGA	1 cut(s)	91
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	64, 154
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	60, 118, 130
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 320
HpyF3I	CTNAG	5 cut(s)	170, 324, 378, 400, 485
HpySE526I	ACGT	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	60, 118
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	9 cut(s)	22, 178, 205, 210, 261, 276, 355, 382, 472
Lsp1109I	GCAGC	2 cut(s)	307, 452
LweI	GCATC	2 cut(s)	211, 406
MaeII	ACGT	1 cut(s)	132
MboII	GAAGA	3 cut(s)	106, 191, 416
MfeI	CAATTG	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	365
MluCI	AATT	5 cut(s)	81, 164, 335, 353, 496
Mph1103I	ATGCAT	1 cut(s)	120
MseI	TTAA	3 cut(s)	21, 356, 431
MslI	CAYNNNNRTG	1 cut(s)	370
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	3 cut(s)	193, 248, 370
MunI	CAATTG	1 cut(s)	496
MvaI	CCWGG	2 cut(s)	193, 370
MwoI	GCNNNNNNNGC	2 cut(s)	300, 320
NciI	CCSGG	1 cut(s)	248
NdeI	CATATG	1 cut(s)	457
NlaIII	CATG	2 cut(s)	60, 118
NlaIV	GGNNCC	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	120
NspI	RCATGY	1 cut(s)	118
PaeI	GCATGC	1 cut(s)	118
Pfl23II	CGTACG	1 cut(s)	102
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	4 cut(s)	322, 349, 421, 442
Psp6I	CCWGG	2 cut(s)	191, 368
PspGI	CCWGG	2 cut(s)	191, 368
PspLI	CGTACG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	204
RsaI	GTAC	2 cut(s)	104, 151
RsaNI	GTAC	2 cut(s)	103, 150
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	21, 356, 431
SatI	GCNGC	4 cut(s)	321, 348, 420, 441
ScrFI	CCNGG	3 cut(s)	193, 248, 370
SduI	GDGCHC	1 cut(s)	365
SfaNI	GCATC	2 cut(s)	211, 406
SmiMI	CAYNNNNRTG	1 cut(s)	370
SphI	GCATGC	1 cut(s)	118
Sse9I	AATT	5 cut(s)	81, 164, 335, 353, 496
SsiI	CCGC	2 cut(s)	347, 420
StyD4I	CCNGG	3 cut(s)	191, 246, 368
TaaI	ACNGT	2 cut(s)	64, 154
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	1 cut(s)	66
TasI	AATT	5 cut(s)	81, 164, 335, 353, 496
TatI	WGTACW	1 cut(s)	149
TauI	GCSGC	2 cut(s)	350, 422
Tru1I	TTAA	3 cut(s)	21, 356, 431
Tru9I	TTAA	3 cut(s)	21, 356, 431
TseI	GCWGC	2 cut(s)	320, 440
TspGWI	ACGGA	1 cut(s)	120
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.