Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Forward (+)

2175414 .. 2178924

Gene Structure 3511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g02740.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCCAGGAGGCCAGTCAATCCTGCTAGGCGCATTGGTGATGGTGGAAGCATCCCATTTGTGGGTGCGGTGCAGGCCAAAGCGAGCTCATCACCTGTACTGTCTGTAGCGCTTGTGCTTCTGGGTACAATTCTTCTTGTCTGCTATGCTTTTAGCGGGTCAGGTGGAGTGAGCAGTAAAGAGGCTGTGATTAAACTTGAAGGTGGTGTTTCATGTACACTCGAAGTTCAGAGAGCAATACCTATACTAAAGAAGGCATATGGTGATAGCATGCATAAGGTATTGCATGTAGGCCCTGAAACATGTTCAGTTGTATCTAAATTATTAAAAGAGGAGGAGACTGAAGCCTGGGGTGTGGAACCATATGACTTGGAAGATGTTGATGGAAATTGCAAGAGTCTTGTGAACAAAGGCATTGTGCGTGCTGCTGATATAAAGTTTCCTCTTCCATACCGGGCAAAATCATTTTCTCTGGTAATAGTATCAGATGCATTAGATTACTTGTCTCCGAAGTACCTCAACAGAACTCTTCCAGAGTTAGCAAGGGTATCTGCTGATGGCGTAATTATTTTCTCTGGTTATCCAGGTCAACAAAGAGCTAAAGTTGCAGAGCTATCCAAATTTGGCCGTCCAGCCAAATTGCGAAGCTCATCCTGGTGGATAAGATTTTTTGTTCAAACAAGCTTAGAAGAGAATGAATCAGCCTCGAAGAAGTTTGAACAGGCTGCATTAAAGAGATCTTATAAGCCCGAATGTCAGGTATTCCACCTTAAGTCATACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11

Protein Analysis

262

Amino Acids

28.52

Weight (kDa)

9.27

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AciI	CCGC	2 cut(s)	68, 156
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	4 cut(s)	99, 127, 217, 515
AfeI	AGCGCT	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	61, 62
AflII	CTTAAG	1 cut(s)	770
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	200, 677, 719
AjnI	CCWGG	4 cut(s)	5, 347, 583, 653
AluBI	AGCT	5 cut(s)	87, 599, 613, 648, 684
AluI	AGCT	5 cut(s)	87, 599, 613, 648, 684
Alw21I	GWGCWC	1 cut(s)	89
Alw26I	GTCTC	2 cut(s)	332, 510
Aor51HI	AGCGCT	1 cut(s)	111
AoxI	GGCC	4 cut(s)	11, 75, 292, 625
ApeKI	GCWGC	2 cut(s)	425, 725
ApoI	RAATTY	1 cut(s)	620
AspLEI	GCGC	2 cut(s)	33, 112
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	455
AsuHPI	GGTGA	3 cut(s)	50, 84, 275
BanII	GRGCYC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	412, 712
BccI	CCATC	3 cut(s)	35, 377, 551
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	4 cut(s)	7, 349, 585, 655
BcnI	CCSGG	1 cut(s)	455
BcoDI	GTCTC	2 cut(s)	332, 510
BfaI	CTAG	1 cut(s)	27
BfmI	CTRYAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	113
BfrI	CTTAAG	1 cut(s)	770
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	2 cut(s)	426, 726
BlsI	GCNGC	2 cut(s)	427, 727
Bme1390I	CCNGG	5 cut(s)	7, 349, 455, 585, 655
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	5 cut(s)	7, 349, 455, 585, 655
BmsI	GCATC	2 cut(s)	60, 478
BpuMI	CCSGG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 62
Bse1I	ACTGG	1 cut(s)	14
BseBI	CCWGG	4 cut(s)	7, 349, 585, 655
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	2 cut(s)	51, 650
BseLI	CCNNNNNNNGG	2 cut(s)	61, 62
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	2 cut(s)	347, 350
BseXI	GCAGC	2 cut(s)	412, 712
BsgI	GTGCAG	1 cut(s)	92
BshFI	GGCC	4 cut(s)	13, 77, 294, 627
BsiHKAI	GWGCWC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	61, 62
BsmAI	GTCTC	2 cut(s)	332, 510
BsnI	GGCC	4 cut(s)	13, 77, 294, 627
Bsp1286I	GDGCHC	1 cut(s)	89
Bsp1407I	TGTACA	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	737
BspACI	CCGC	2 cut(s)	68, 156
BspANI	GGCC	4 cut(s)	13, 77, 294, 627
BspLI	GGNNCC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	770
BsrGI	TGTACA	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	737
Bst2UI	CCWGG	4 cut(s)	7, 349, 585, 655
Bst4CI	ACNGT	1 cut(s)	102
Bst6I	CTCTTC	3 cut(s)	450, 534, 684
BstAFI	CTTAAG	1 cut(s)	770
BstAUI	TGTACA	1 cut(s)	215
BstC8I	GCNNGC	4 cut(s)	75, 85, 272, 423
BstDEI	CTNAG	1 cut(s)	685
BstF5I	GGATG	2 cut(s)	51, 650
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	2 cut(s)	33, 112
BstKTI	GATC	1 cut(s)	740
BstMAI	GTCTC	2 cut(s)	332, 510
BstMBI	GATC	1 cut(s)	737
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 605
BstNI	CCWGG	4 cut(s)	7, 349, 585, 655
BstNSI	RCATGY	3 cut(s)	274, 290, 306
BstSCI	CCNGG	5 cut(s)	5, 347, 453, 583, 653
BstSFI	CTRYAG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	412, 712
BstX2I	RGATCY	1 cut(s)	737
BstYI	RGATCY	1 cut(s)	737
BsuRI	GGCC	4 cut(s)	13, 77, 294, 627
BtsCI	GGATG	2 cut(s)	51, 650
Cac8I	GCNNGC	4 cut(s)	75, 85, 272, 423
CfoI	GCGC	2 cut(s)	33, 112
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	4 cut(s)	98, 126, 216, 514
CviAII	CATG	4 cut(s)	213, 271, 287, 303
CviQI	GTAC	4 cut(s)	98, 126, 216, 514
DdeI	CTNAG	1 cut(s)	685
DpnI	GATC	1 cut(s)	739
DpnII	GATC	1 cut(s)	737
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	3 cut(s)	450, 534, 684
EarI	CTCTTC	3 cut(s)	450, 534, 684
Ecl136II	GAGCTC	1 cut(s)	87
Eco24I	GRGCYC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	87
Eco57I	CTGAAG	1 cut(s)	363
EcoICRI	GAGCTC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	4 cut(s)	5, 347, 583, 653
EcoT22I	ATGCAT	2 cut(s)	276, 493
EcoT38I	GRGCYC	1 cut(s)	89
FaeI	CATG	4 cut(s)	216, 274, 290, 306
FatI	CATG	4 cut(s)	212, 270, 286, 302
FauI	CCCGC	1 cut(s)	149
FauNDI	CATATG	2 cut(s)	259, 364
Fnu4HI	GCNGC	2 cut(s)	426, 726
FokI	GGATG	2 cut(s)	38, 637
FriOI	GRGCYC	1 cut(s)	89
Fsp4HI	GCNGC	2 cut(s)	426, 726
FspBI	CTAG	1 cut(s)	27
GlaI	GCGC	2 cut(s)	32, 111
GluI	GCNGC	2 cut(s)	426, 726
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	4 cut(s)	13, 77, 294, 627
HapII	CCGG	1 cut(s)	454
HhaI	GCGC	2 cut(s)	33, 112
Hin1II	CATG	4 cut(s)	216, 274, 290, 306
Hin6I	GCGC	2 cut(s)	31, 110
HinP1I	GCGC	2 cut(s)	31, 110
HincII	GTYRAC	1 cut(s)	590
HindII	GTYRAC	1 cut(s)	590
HindIII	AAGCTT	1 cut(s)	682
HinfI	GANTC	2 cut(s)	397, 698
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	3 cut(s)	50, 84, 275
Hpy166II	GTNNAC	3 cut(s)	218, 406, 590
Hpy188I	TCNGA	3 cut(s)	231, 487, 510
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	3 cut(s)	218, 406, 590
HpyAV	CCTTC	2 cut(s)	194, 247
HpyCH4III	ACNGT	1 cut(s)	102
HpyCH4V	TGCA	7 cut(s)	73, 274, 286, 393, 491, 608, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 605
HpyF3I	CTNAG	1 cut(s)	685
Hsp92II	CATG	4 cut(s)	216, 274, 290, 306
HspAI	GCGC	2 cut(s)	31, 110
Kzo9I	GATC	1 cut(s)	737
Lsp1109I	GCAGC	2 cut(s)	412, 712
LweI	GCATC	2 cut(s)	60, 478
MaeI	CTAG	1 cut(s)	27
MalI	GATC	1 cut(s)	739
MboI	GATC	1 cut(s)	737
MboII	GAAGA	6 cut(s)	125, 386, 437, 521, 701, 721
MflI	RGATCY	1 cut(s)	737
MhlI	GDGCHC	1 cut(s)	89
MluCI	AATT	6 cut(s)	129, 320, 388, 564, 620, 638
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	7 cut(s)	3, 175, 325, 328, 453, 527, 715
Mph1103I	ATGCAT	2 cut(s)	276, 493
MseI	TTAA	4 cut(s)	192, 326, 731, 771
MslI	CAYNNNNRTG	1 cut(s)	655
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	5 cut(s)	7, 349, 455, 585, 655
MvaI	CCWGG	4 cut(s)	7, 349, 585, 655
MwoI	GCNNNNNNNGC	2 cut(s)	74, 605
NciI	CCSGG	1 cut(s)	455
NdeI	CATATG	2 cut(s)	259, 364
NdeII	GATC	1 cut(s)	737
NlaIII	CATG	4 cut(s)	216, 274, 290, 306
NlaIV	GGNNCC	1 cut(s)	360
NsiI	ATGCAT	2 cut(s)	276, 493
NspI	RCATGY	3 cut(s)	274, 290, 306
PaeI	GCATGC	1 cut(s)	274
PciI	ACATGT	1 cut(s)	302
PfeI	GAWTC	1 cut(s)	698
PfoI	TCCNGGA	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	427, 727
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PscI	ACATGT	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	744
Psp124BI	GAGCTC	1 cut(s)	89
Psp6I	CCWGG	4 cut(s)	5, 347, 583, 653
PspGI	CCWGG	4 cut(s)	5, 347, 583, 653
PspN4I	GGNNCC	1 cut(s)	360
PspPI	GGNCC	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	737
RsaI	GTAC	4 cut(s)	99, 127, 217, 515
RsaNI	GTAC	4 cut(s)	98, 126, 216, 514
RseI	CAYNNNNRTG	1 cut(s)	655
SacI	GAGCTC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	192, 326, 731, 771
SatI	GCNGC	2 cut(s)	426, 726
Sau3AI	GATC	1 cut(s)	737
Sau96I	GGNCC	1 cut(s)	293
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	5 cut(s)	7, 349, 455, 585, 655
SduI	GDGCHC	1 cut(s)	89
SfaNI	GCATC	2 cut(s)	60, 478
SfcI	CTRYAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
SphI	GCATGC	1 cut(s)	274
Sse9I	AATT	6 cut(s)	129, 320, 388, 564, 620, 638
SsiI	CCGC	2 cut(s)	68, 156
SspMI	CTAG	1 cut(s)	27
SstI	GAGCTC	1 cut(s)	89
StyD4I	CCNGG	5 cut(s)	5, 347, 453, 583, 653
TaaI	ACNGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	222, 707
TasI	AATT	6 cut(s)	129, 320, 388, 564, 620, 638
TatI	WGTACW	2 cut(s)	97, 215
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	4 cut(s)	192, 326, 731, 771
Tru9I	TTAA	4 cut(s)	192, 326, 731, 771
TseI	GCWGC	2 cut(s)	425, 725
TspDTI	ATGAA	2 cut(s)	201, 711
Vha464I	CTTAAG	1 cut(s)	770
XapI	RAATTY	1 cut(s)	620
XceI	RCATGY	3 cut(s)	274, 290, 306
XspI	CTAG	1 cut(s)	27
Zsp2I	ATGCAT	2 cut(s)	276, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.