Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Forward (+)

21373980 .. 21376058

Gene Structure 2079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g26460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCGAGGAGGGCGGTGGGATCCACGCGCCGCAATGGGAGCTTTCCGTTTTCCGGAGCCTTCAACTCTAAATCGAAGTCGTCGCCTTTGTTACCCATTGGCCTTGTAGTCGTGGGAGCCATTCTTCTAATCGGCTATGTTTATAAGGGATCAGGTGTCCTCGGGGGTGCCAAAGTAGTTAGTAGAGTTGAAGGAGACTTCTCATGCACGCTAGAAGTTCAGAGAGCAATACCTTTCCTAAAGAAAGCGTATAGTGGCAGCATGCACAAAGTTTTGCATATTGGCCCCGATACTTGTTCAGTTGTATCTGCATTGTTGAAAGATGAGGAAATTGAAGCATGGGGTGTAGAACCATATGAGATAGAGGATGCTGATAGGACTTGCAGGAGTCTTGTGCGCAAAGGCATTGTGCGGGTGGCTGATATAAAGTTCCATCTACCCTATAAAGCGAAGTCCTTTTCTCTTGTGATTGTCTCGGATGCTTTAGATTACCTCTCTCCGAAGTATCTGAATAGGACTCTTCCAGAATTGGCAAGGGTGTCTTCTGATGGCCTTGTTATTTTTTCAGGTTTCCCTGGCCAACAGAAAGCTAAGGTTTCTGAGCTATCCAAATTCGGACGTCCAGCCAAAATGCGGAGCTCCTCTTGGTGGATACGTTATTTTGTCCAGACCAGCTTAGAAGAAAACGAAGCTGCCAACAAGAAGTTCGAGCAGGCCACATCAAAGGAATCATACCAGCCGAGCTGCCAAGTGTTTCACCTTAACTCATATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW

Protein Analysis

259

Amino Acids

28.52

Weight (kDa)

9.48

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AatII	GACGTC	1 cut(s)	622
Acc16I	TGCGCA	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	4 cut(s)	14, 31, 412, 634
AclWI	GGATC	3 cut(s)	15, 28, 157
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	611
AcyI	GRCGYC	1 cut(s)	619
AfiI	CCNNNNNNNGG	3 cut(s)	53, 633, 648
AgsI	TTSAA	4 cut(s)	64, 191, 319, 335
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	689, 721
AluBI	AGCT	7 cut(s)	42, 590, 604, 639, 675, 692, 744
AluI	AGCT	7 cut(s)	42, 590, 604, 639, 675, 692, 744
Alw21I	GWGCWC	1 cut(s)	641
Alw26I	GTCTC	2 cut(s)	189, 478
AlwI	GGATC	3 cut(s)	15, 28, 157
Ama87I	CYCGRG	1 cut(s)	161
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	5 cut(s)	100, 283, 550, 577, 714
ApeKI	GCWGC	3 cut(s)	258, 692, 744
ApoI	RAATTY	1 cut(s)	611
AspLEI	GCGC	2 cut(s)	30, 399
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	579
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	167
BanII	GRGCYC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	641
BbvI	GCAGC	3 cut(s)	270, 679, 731
BccI	CCATC	2 cut(s)	441, 542
BciT130I	CCWGG	1 cut(s)	576
BciVI	GTATCC	1 cut(s)	645
BcoDI	GTCTC	2 cut(s)	189, 478
BfaI	CTAG	1 cut(s)	212
BfuI	GTATCC	1 cut(s)	645
BisI	GCNGC	4 cut(s)	31, 259, 693, 745
BlsI	GCNGC	4 cut(s)	32, 260, 694, 746
Bme1390I	CCNGG	1 cut(s)	576
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	5 cut(s)	22, 58, 118, 169, 286
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	358, 469
BpiI	GAAGAC	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	619
BsaJI	CCNNGG	2 cut(s)	160, 574
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 633, 648
Bse3DI	GCAATG	1 cut(s)	40
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	2 cut(s)	160, 574
BseGI	GGATG	2 cut(s)	373, 484
BseLI	CCNNNNNNNGG	3 cut(s)	53, 633, 648
BseMI	GCAATG	1 cut(s)	40
BseMII	CTCAG	1 cut(s)	591
BseRI	GAGGAG	2 cut(s)	22, 631
BseXI	GCAGC	3 cut(s)	270, 679, 731
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	5 cut(s)	102, 285, 552, 579, 716
BshNI	GGYRCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	641
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	3 cut(s)	53, 633, 648
BsmAI	GTCTC	2 cut(s)	189, 478
BsnI	GGCC	5 cut(s)	102, 285, 552, 579, 716
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	641
Bsp13I	TCCGGA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	20, 149
BspACI	CCGC	4 cut(s)	14, 31, 412, 634
BspANI	GGCC	5 cut(s)	102, 285, 552, 579, 716
BspCNI	CTCAG	1 cut(s)	592
BspEI	TCCGGA	1 cut(s)	53
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	5 cut(s)	22, 58, 118, 169, 286
BspPI	GGATC	3 cut(s)	15, 28, 157
BspT107I	GGYRCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	160, 574
BssMI	GATC	2 cut(s)	20, 149
BssNI	GRCGYC	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	619
BstC8I	GCNNGC	3 cut(s)	209, 263, 714
BstDEI	CTNAG	3 cut(s)	591, 600, 676
BstF5I	GGATG	2 cut(s)	373, 484
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	2 cut(s)	30, 399
BstKTI	GATC	2 cut(s)	23, 152
BstMAI	GTCTC	2 cut(s)	189, 478
BstMBI	GATC	2 cut(s)	20, 149
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	574
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	3 cut(s)	270, 679, 731
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	645
BsuRI	GGCC	5 cut(s)	102, 285, 552, 579, 716
BtsCI	GGATG	2 cut(s)	373, 484
Cac8I	GCNNGC	3 cut(s)	209, 263, 714
CfoI	GCGC	2 cut(s)	30, 399
Cfr13I	GGNCC	1 cut(s)	284
CviAII	CATG	3 cut(s)	204, 262, 339
DdeI	CTNAG	3 cut(s)	591, 600, 676
DpnI	GATC	2 cut(s)	22, 151
DpnII	GATC	2 cut(s)	20, 149
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	639
Eco24I	GRGCYC	1 cut(s)	641
Eco53kI	GAGCTC	1 cut(s)	639
Eco88I	CYCGRG	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	641
FaeI	CATG	3 cut(s)	207, 265, 342
FalI	AAGNNNNNCTT	2 cut(s)	526, 558
FatI	CATG	3 cut(s)	203, 261, 338
FauI	CCCGC	1 cut(s)	405
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	4 cut(s)	31, 259, 693, 745
FokI	GGATG	2 cut(s)	380, 491
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	4 cut(s)	31, 259, 693, 745
FspBI	CTAG	1 cut(s)	212
FspI	TGCGCA	1 cut(s)	398
GlaI	GCGC	2 cut(s)	29, 398
GluI	GCNGC	4 cut(s)	31, 259, 693, 745
HaeIII	GGCC	5 cut(s)	102, 285, 552, 579, 716
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	2 cut(s)	30, 399
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	3 cut(s)	207, 265, 342
Hin6I	GCGC	2 cut(s)	28, 397
HinP1I	GCGC	2 cut(s)	28, 397
HinfI	GANTC	3 cut(s)	388, 517, 728
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	749
Hpy188I	TCNGA	7 cut(s)	222, 478, 501, 510, 547, 601, 617
Hpy188III	TCNNGA	3 cut(s)	54, 524, 667
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	70, 185
HpyCH4IV	ACGT	2 cut(s)	619, 655
HpyCH4V	TGCA	5 cut(s)	207, 265, 277, 311, 384
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpyF3I	CTNAG	3 cut(s)	591, 600, 676
HpySE526I	ACGT	2 cut(s)	619, 655
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	207, 265, 342
HspAI	GCGC	2 cut(s)	28, 397
Kpn2I	TCCGGA	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	20, 149
LmnI	GCTCC	5 cut(s)	39, 56, 116, 636, 644
Lsp1109I	GCAGC	3 cut(s)	270, 679, 731
LweI	GCATC	2 cut(s)	358, 469
MaeI	CTAG	1 cut(s)	212
MaeII	ACGT	2 cut(s)	619, 655
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	2 cut(s)	22, 151
MboI	GATC	2 cut(s)	20, 149
MboII	GAAGA	4 cut(s)	116, 512, 534, 692
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	641
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	3 cut(s)	330, 527, 611
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	397, 511
MnlI	CCTC	6 cut(s)	3, 170, 319, 358, 503, 652
Mox20I	TGGCCA	1 cut(s)	579
MroI	TCCGGA	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	579
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	1 cut(s)	39
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	2 cut(s)	20, 149
NlaIII	CATG	3 cut(s)	207, 265, 342
NlaIV	GGNNCC	5 cut(s)	22, 58, 118, 169, 286
NmeAIII	GCCGAG	1 cut(s)	765
NsbI	TGCGCA	1 cut(s)	398
NspI	RCATGY	1 cut(s)	265
PaeI	GCATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	728
PkrI	GCNGC	4 cut(s)	32, 260, 694, 746
PleI	GAGTC	2 cut(s)	396, 511
PpsI	GAGTC	2 cut(s)	396, 511
PsiI	TTATAA	1 cut(s)	144
Psp124BI	GAGCTC	1 cut(s)	641
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	5 cut(s)	22, 58, 118, 169, 286
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	762
SatI	GCNGC	4 cut(s)	31, 259, 693, 745
Sau3AI	GATC	2 cut(s)	20, 149
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	397, 511
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	641
SfaNI	GCATC	2 cut(s)	358, 469
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	3 cut(s)	330, 527, 611
SsiI	CCGC	4 cut(s)	14, 31, 412, 634
SspMI	CTAG	1 cut(s)	212
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	1 cut(s)	574
TaiI	ACGT	2 cut(s)	622, 658
TaqI	TCGA	3 cut(s)	5, 74, 708
TasI	AATT	3 cut(s)	330, 527, 611
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	1 cut(s)	762
Tru9I	TTAA	1 cut(s)	762
TseI	GCWGC	3 cut(s)	258, 692, 744
TspGWI	ACGGA	1 cut(s)	36
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	212
ZraI	GACGTC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.