Rh6AG492100

At3g49720-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
66853809 .. 66859262
5454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG492100.1

Sequence Viewer

Length: 282 bp
ATGCGAACCTATCTCGGTGATTGGGAGATACCGGAGGCGGTTGGCTTTCAGGCTCGTCCTATTCTAAATCAAGGCTCTCTTGGAAAGCAGAGAGCTAAAGCAGTTGAGGTCTCCAAATTTGGTAGGGTGGCTAAATTGAGGAACAAAGCCTGGTGGACTAAATTTTTTGGGCAGGTTAGCTTAGAAGAGAACGAAGGTGCTAGCAAGAAGTTTAATATTGCTGCAACAAAGATGTCATTTGTCTCAAATTGTCAAGTTTTCCACCTCAGGTCATTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

10.17

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 163
AciI CCGC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 116, 161
AgsI TTSAA 1 cut(s) 277
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 2 cut(s) 95, 180
AluI AGCT 2 cut(s) 95, 180
Alw26I GTCTC 2 cut(s) 115, 247
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 2 cut(s) 116, 161
AsuHPI GGTGA 1 cut(s) 29
AsuNHI GCTAGC 1 cut(s) 200
AxyI CCTNAGG 1 cut(s) 266
BbvI GCAGC 1 cut(s) 208
BciT130I CCWGG 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 115, 247
BfaI CTAG 1 cut(s) 201
BfuAI ACCTGC 1 cut(s) 163
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 151
BmrFI CCNGG 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 115
BsaWI WCCGGW 1 cut(s) 31
Bse21I CCTNAGG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 208
BsiSI CCGG 1 cut(s) 32
BsmAI GTCTC 2 cut(s) 115, 247
Bso31I GGTCTC 1 cut(s) 115
BspACI CCGC 1 cut(s) 38
BspCNI CTCAG 1 cut(s) 279
BspMI ACCTGC 1 cut(s) 163
BspOI GCTAGC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 115
Bst2UI CCWGG 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 181, 266
BstMAI GTCTC 2 cut(s) 115, 247
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 266
BveI ACCTGC 1 cut(s) 163
Cac8I GCNNGC 1 cut(s) 202
CviJI RGCY 7 cut(s) 45, 53, 75, 95, 131, 149, 180
CviKI_1 RGCY 7 cut(s) 45, 53, 75, 95, 131, 149, 180
DdeI CTNAG 2 cut(s) 181, 266
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 115
Eco81I CCTNAGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 149
FalI AAGNNNNNCTT 2 cut(s) 63, 95
Fnu4HI GCNGC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 201
GluI GCNGC 1 cut(s) 222
HapII CCGG 1 cut(s) 32
HpaII CCGG 1 cut(s) 32
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 156
HpyAV CCTTC 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 181, 266
LpnPI CCDG 6 cut(s) 35, 45, 136, 158, 163, 253
Lsp1109I GCAGC 1 cut(s) 208
MaeI CTAG 1 cut(s) 201
MboII GAAGA 1 cut(s) 197
MfeI CAATTG 1 cut(s) 277
MluCI AATT 5 cut(s) 116, 134, 161, 247, 277
MnlI CCTC 4 cut(s) 28, 100, 132, 275
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 151
MunI CAATTG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 151
NheI GCTAGC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 223
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 151
SetI ASST 8 cut(s) 11, 97, 111, 177, 182, 199, 267, 272
Sse9I AATT 5 cut(s) 116, 134, 161, 247, 277
SsiI CCGC 1 cut(s) 38
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 149
TasI AATT 5 cut(s) 116, 134, 161, 247, 277
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TseI GCWGC 1 cut(s) 221
XapI RAATTY 2 cut(s) 116, 161
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.