Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003725.1

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Forward (+)

5685 .. 8214

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003725.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ctgacgtttgctgatctgaaggagtttttggattcatttcctgcgaagaggacaacagtcatgtcgaggaggcaggtgggatccacgcgccggaacgcgaactttccgtttgccggagccttcaattccaaatcgaagtcatctcctttgttgtccatagggcttgtagttgtgggagctattcttctaatcggctatgtttataaaggctcaggtgcctttgggggtagcaaagtagttagcagagttgaaggggacttctcatgcacttcagaagttcagagagcgataccttttctgcagaaagcgtatagtggtagcatgcacaaagttctgcacattggccctgatacttgttcagttgtctctgcgttgttgaaagaagaggaaactgaagcatggggagtggaaccatatgagctagaggatgctgatagccattgcaagagtcttgtgcgtaaaggcattgtgcgtgtggctgacattaagttccctctaccatacaaagcaaagtctttctcccttgtgattgtttcagatgctttggattacctctccccaaaatatctgaataggactcttccagaaattgcaagagtgtctattgatggtcttgttattttttcaggtttcccaggtcaacagaaagctaaagtttctgaattgtcaaaatttggacgccctgccaaaatgaggagtgcttcttggtgggtacgctattttgttcagaccagcttagaagaaaatgaagctgcgagcaagaagtttgagcaggctgcaaaaaaggggtcgtaccagccaagctgtcaagtgtttcaccttaactcatatcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW

Protein Analysis

278

Amino Acids

30.68

Weight (kDa)

9.43

Isoelectric Point (pI)

46.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AarI	CACCTGC	1 cut(s)	64
Acc36I	ACCTGC	1 cut(s)	64
AccB1I	GGYRCC	1 cut(s)	215
AccII	CGCG	2 cut(s)	88, 98
AclWI	GGATC	2 cut(s)	75, 88
AcsI	RAATTY	1 cut(s)	671
AcuI	CTGAAG	3 cut(s)	38, 255, 414
AcyI	GRCGYC	1 cut(s)	679
AfaI	GTAC	2 cut(s)	714, 794
AfiI	CCNNNNNNNGG	3 cut(s)	90, 113, 693
AgsI	TTSAA	3 cut(s)	124, 251, 379
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	11, 43
AluBI	AGCT	6 cut(s)	179, 421, 650, 735, 752, 804
AluI	AGCT	6 cut(s)	179, 421, 650, 735, 752, 804
Alw26I	GTCTC	1 cut(s)	370
AlwI	GGATC	2 cut(s)	75, 88
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	2 cut(s)	752, 776
ApoI	RAATTY	1 cut(s)	671
ArsI	GACNNNNNNTTYG	2 cut(s)	773, 805
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	1 cut(s)	809
BamHI	GGATCC	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	215
BbvI	GCAGC	2 cut(s)	739, 763
BccI	CCATC	1 cut(s)	602
BciT130I	CCWGG	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	370
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	299
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	2 cut(s)	753, 777
BlsI	GCNGC	2 cut(s)	754, 778
Bme1390I	CCNGG	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	4 cut(s)	82, 118, 217, 411
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	2 cut(s)	418, 529
BoxI	GACNNNNGTC	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	679
BsaJI	CCNNGG	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 113, 693
Bse3DI	GCAATG	1 cut(s)	439
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	3 cut(s)	90, 113, 693
BseMI	GCAATG	1 cut(s)	439
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	2 cut(s)	82, 709
BseXI	GCAGC	2 cut(s)	739, 763
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	2 cut(s)	88, 98
BshFI	GGCC	1 cut(s)	345
BshNI	GGYRCC	1 cut(s)	215
BsiSI	CCGG	2 cut(s)	91, 114
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	90, 113, 693
BsmAI	GTCTC	1 cut(s)	370
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	13, 80
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	224
BspFNI	CGCG	2 cut(s)	88, 98
BspLI	GGNNCC	4 cut(s)	82, 118, 217, 411
BspMAI	CTGCAG	1 cut(s)	303
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	75, 88
BspT107I	GGYRCC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	2 cut(s)	13, 80
BssNI	GRCGYC	1 cut(s)	679
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	3 cut(s)	41, 378, 585
BstACI	GRCGYC	1 cut(s)	679
BstC8I	GCNNGC	3 cut(s)	323, 757, 774
BstDEI	CTNAG	2 cut(s)	211, 736
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	2 cut(s)	88, 98
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	16, 83
BstMAI	GTCTC	1 cut(s)	370
BstMBI	GATC	2 cut(s)	13, 80
BstNI	CCWGG	1 cut(s)	636
BstNSI	RCATGY	1 cut(s)	325
BstPAI	GACNNNNGTC	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	299
BstUI	CGCG	2 cut(s)	88, 98
BstV1I	GCAGC	2 cut(s)	739, 763
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	3 cut(s)	323, 757, 774
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	344
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	2 cut(s)	713, 793
CviAII	CATG	4 cut(s)	61, 264, 322, 399
CviQI	GTAC	2 cut(s)	713, 793
DdeI	CTNAG	2 cut(s)	211, 736
DpnI	GATC	2 cut(s)	15, 82
DpnII	GATC	2 cut(s)	13, 80
Eam1104I	CTCTTC	3 cut(s)	41, 378, 585
EarI	CTCTTC	3 cut(s)	41, 378, 585
Eco57I	CTGAAG	3 cut(s)	38, 255, 414
EcoRII	CCWGG	1 cut(s)	634
FaeI	CATG	4 cut(s)	64, 267, 325, 402
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	4 cut(s)	60, 263, 321, 398
FauNDI	CATATG	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	753, 777
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	2 cut(s)	753, 777
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	753, 777
HaeIII	GGCC	1 cut(s)	345
HapII	CCGG	2 cut(s)	91, 114
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	679
Hin1II	CATG	4 cut(s)	64, 267, 325, 402
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	641
HindII	GTYRAC	1 cut(s)	641
HinfI	GANTC	3 cut(s)	32, 448, 577
HpaII	CCGG	2 cut(s)	91, 114
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	1 cut(s)	641
Hpy188I	TCNGA	7 cut(s)	18, 274, 282, 538, 570, 661, 729
Hpy188III	TCNNGA	1 cut(s)	584
Hpy8I	GTNNAC	1 cut(s)	641
HpyAV	CCTTC	3 cut(s)	13, 130, 245
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	7 cut(s)	267, 301, 325, 337, 444, 593, 779
HpyF3I	CTNAG	2 cut(s)	211, 736
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	679
Hsp92II	CATG	4 cut(s)	64, 267, 325, 402
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	13, 80
LmnI	GCTCC	2 cut(s)	116, 176
Lsp1109I	GCAGC	2 cut(s)	739, 763
LweI	GCATC	2 cut(s)	418, 529
MaeI	CTAG	1 cut(s)	422
MaeII	ACGT	1 cut(s)	5
MalI	GATC	2 cut(s)	15, 82
MboI	GATC	2 cut(s)	13, 80
MboII	GAAGA	5 cut(s)	58, 176, 395, 572, 752
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	4 cut(s)	124, 588, 662, 671
MlyI	GAGTC	2 cut(s)	457, 571
MnlI	CCTC	8 cut(s)	42, 60, 63, 379, 418, 504, 563, 687
MseI	TTAA	2 cut(s)	486, 822
MspI	CCGG	2 cut(s)	91, 114
MspR9I	CCNGG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	636
MvnI	CGCG	2 cut(s)	88, 98
NdeI	CATATG	1 cut(s)	415
NdeII	GATC	2 cut(s)	13, 80
NlaIII	CATG	4 cut(s)	64, 267, 325, 402
NlaIV	GGNNCC	4 cut(s)	82, 118, 217, 411
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PaqCI	CACCTGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	2 cut(s)	754, 778
PleI	GAGTC	2 cut(s)	456, 571
PpsI	GAGTC	2 cut(s)	456, 571
PshAI	GACNNNNGTC	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	4 cut(s)	82, 118, 217, 411
PspPI	GGNCC	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	303
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	714, 794
RsaNI	GTAC	2 cut(s)	713, 793
SaqAI	TTAA	2 cut(s)	486, 822
SatI	GCNGC	2 cut(s)	753, 777
Sau3AI	GATC	2 cut(s)	13, 80
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	2 cut(s)	457, 571
ScrFI	CCNGG	1 cut(s)	636
SfaNI	GCATC	2 cut(s)	418, 529
SfcI	CTRYAG	1 cut(s)	299
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	4 cut(s)	124, 588, 662, 671
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	1 cut(s)	634
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	2 cut(s)	65, 134
TasI	AATT	4 cut(s)	124, 588, 662, 671
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	486, 822
Tru9I	TTAA	2 cut(s)	486, 822
TseI	GCWGC	2 cut(s)	752, 776
TspDTI	ATGAA	2 cut(s)	24, 762
TspGWI	ACGGA	1 cut(s)	96
XapI	RAATTY	1 cut(s)	671
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.