Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00159

Orthogroup ID

OG0000825

Physical Location & Seq

Genomic Coordinates Forward (+)

24664 .. 27724

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCGAGGAGGCAGGTGGGATCCACGCGCCGGAACGCGAACTTTCCGTTTGCCGGAGCCTTCAATTCGAAATCGAAGTCATCTCCTTTGTTGTCCATAGGGCTTGTAGTTGTGGGAGCTATTCTTCTAATCGGCTATGTTTATAAAGGCTCAGGTGCCTTTGGGGGTAGCAAAGTAGTTAGCAGAGTTGAAGGGGACTTCTCATGCACGTCAGAAGTTCAGAGAGCGATACCTTTTCTGCAGAAAGCGTATAGTGGTAGCATGCACAAAGTTCTGCACATTGGCCCTGATACTTGTTCAGTTGTCTCTGCGTTGTTGAAAGAAGAGGAAACTGAAGCATGGGGAGTGGAACCATATGAGCTAGAGGATGCTGATAGCCATTGCAAGAGTCTTGTGCATAAAGGCATTGTGCGTGTGGCTGACATTAAGTTCCCTCTACCATACAAAGCAAAGTCTTTCTCCCTTGTGATTGTTTCAGATGCTTTGGATTACCTCTCCCCAAAATATCTGAATAGGACTCTTCCAGAAATTGCAAGAGTGTCTATTGATGGTCTTGTTATTTTTTCAGGTTTCCCAGGTCAACAGAAAGCTAAAGTTTCTGAATTGTCAAAATTTGGACGTCCTGCCAAAATGAGGAGCGCTTCTTGGTGGGTACGCTATTTTGTTCAGACCAGCTTAGAAGAAAATGAAGCTGCGAGCAAGAAGTTTGAGCAGGCAGCAAAAAAGGGGTCATACCAGCCAAGCTGTCAAGTGTTTCACCTTAACTCATATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009664 GO:0009832 GO:0009893 GO:0009965 GO:0009987 GO:0010016 GO:0010109 GO:0010393 GO:0010394 GO:0012505 GO:0015976 GO:0016020 GO:0016043 GO:0016051 GO:0017144 GO:0019222 GO:0031090 GO:0031323 GO:0031325 GO:0031410 GO:0031976 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034357 GO:0040007 GO:0040008 GO:0042546 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043576 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044431 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045927 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048638 GO:0048639 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051239 GO:0051240 GO:0055035 GO:0065007 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098588 GO:0098791 GO:0098805 GO:0099402 GO:1901576 GO:1903942 GO:1905157 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MetW

Protein Analysis

258

Amino Acids

28.38

Weight (kDa)

9.39

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000825)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49720 AT3G49720 AT3G49720 AT5G65810
fragaria_vesca	FvH4_1g18360 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740 FvH4_2g02740
malus_domestica	MD02G1190800.v1.1 MD05G1110700.v1.1 MD08G1076600.v1.1 MD10G1114200.v1.1 MD15G1063900.v1.1 MD15G1301800.v1.1
prunus_persica	Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.1G417900_v2.0.a1 Prupe.6G215300_v2.0.a1 Prupe.8G155700_v2.0.a1
pyrus_communis	pycom02g15510 pycom05g10670 pycom10g09860 pycom15g06060 pycom15g26460
rosa_chinensis	RchiOBHm_Chr1g0326791 RchiOBHm_Chr2g0109071 RchiOBHm_Chr6g0247201 RchiOBHm_Chr6g0265491
rosa_laevigata	RLG00000007597 RLG00000010502 RLG00000015215 RLG00000017695 RLG00000017703 RLG00000019872 RLG00000031939 RLG00000032659
rosa_multiflora	Rmu_sc0003410.1_g000016 Rmu_sc0003725.1_g000002 Rmu_sc0004368.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433610 Rroxscaffold_2G00134600 Rroxscaffold_3G00255070 Rroxscaffold_7G00158770 Rroxscaffold_7G00158790 Rroxscaffold_7G00214250
rosa_rugosa	Rorug02G0157000 Rorug05G0524000 Rorug05G0524000 Rorug05G0524000 Rorug06G0378100
rosa_samantha	Rh2AG207800 Rh2BG219100 Rh2CG211200 Rh2DG214200 Rh6AG492100 Rh6BG033200 Rh6BG501700 Rh6DG492800
rosa_wichuraiana	Rw0G004060 Rw1G004210 Rw2G016500 Rw6G003300 Rw6G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	144
AarI	CACCTGC	1 cut(s)	4
AatII	GACGTC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	155
AccII	CGCG	2 cut(s)	28, 38
AclWI	GGATC	2 cut(s)	15, 28
AcsI	RAATTY	1 cut(s)	611
AcuI	CTGAAG	1 cut(s)	354
AcyI	GRCGYC	1 cut(s)	619
AfaI	GTAC	1 cut(s)	654
AfeI	AGCGCT	1 cut(s)	640
AfiI	CCNNNNNNNGG	3 cut(s)	30, 53, 633
AgsI	TTSAA	3 cut(s)	64, 191, 319
AjiI	CACGTC	1 cut(s)	210
AjnI	CCWGG	1 cut(s)	574
AluBI	AGCT	6 cut(s)	119, 361, 590, 675, 692, 744
AluI	AGCT	6 cut(s)	119, 361, 590, 675, 692, 744
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	15, 28
Aor51HI	AGCGCT	1 cut(s)	640
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	2 cut(s)	692, 716
ApoI	RAATTY	1 cut(s)	611
ArsI	GACNNNNNNTTYG	4 cut(s)	62, 94, 713, 745
AspLEI	GCGC	2 cut(s)	30, 641
AspS9I	GGNCC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	749
AsuII	TTCGAA	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	20
BanI	GGYRCC	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	679, 728
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	576
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	642
BfuAI	ACCTGC	1 cut(s)	4
BisI	GCNGC	2 cut(s)	693, 717
BlsI	GCNGC	2 cut(s)	694, 718
Bme1390I	CCNGG	1 cut(s)	576
BmgBI	CACGTC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	284
BmiI	GGNNCC	4 cut(s)	22, 58, 157, 351
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	358, 469
Bpu10I	CCTNAGC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	574
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 53, 633
Bse3DI	GCAATG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	3 cut(s)	30, 53, 633
BseMI	GCAATG	1 cut(s)	379
BseMII	CTCAG	1 cut(s)	165
BseRI	GAGGAG	2 cut(s)	22, 649
BseXI	GCAGC	2 cut(s)	679, 728
BsgI	GTGCAG	1 cut(s)	260
Bsh1236I	CGCG	2 cut(s)	28, 38
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	31, 54
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	3 cut(s)	30, 53, 633
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	285
Bsp119I	TTCGAA	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	164
BspFNI	CGCG	2 cut(s)	28, 38
BspLI	GGNNCC	4 cut(s)	22, 58, 157, 351
BspMAI	CTGCAG	1 cut(s)	243
BspMI	ACCTGC	1 cut(s)	4
BspPI	GGATC	2 cut(s)	15, 28
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	576
Bst6I	CTCTTC	2 cut(s)	318, 525
BstACI	GRCGYC	1 cut(s)	619
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	3 cut(s)	263, 697, 714
BstDEI	CTNAG	2 cut(s)	151, 676
BstF5I	GGATG	1 cut(s)	373
BstFNI	CGCG	2 cut(s)	28, 38
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	2 cut(s)	30, 641
BstKTI	GATC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	20
BstNI	CCWGG	1 cut(s)	576
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	2 cut(s)	28, 38
BstV1I	GCAGC	2 cut(s)	679, 728
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	210
BtsCI	GGATG	1 cut(s)	373
BveI	ACCTGC	1 cut(s)	4
Cac8I	GCNNGC	3 cut(s)	263, 697, 714
CfoI	GCGC	2 cut(s)	30, 641
Cfr13I	GGNCC	1 cut(s)	284
Csp6I	GTAC	1 cut(s)	653
CviAII	CATG	3 cut(s)	204, 262, 339
CviQI	GTAC	1 cut(s)	653
DdeI	CTNAG	2 cut(s)	151, 676
DpnI	GATC	1 cut(s)	22
DpnII	GATC	1 cut(s)	20
Eam1104I	CTCTTC	2 cut(s)	318, 525
EarI	CTCTTC	2 cut(s)	318, 525
Eco47III	AGCGCT	1 cut(s)	640
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	207, 265, 342
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	3 cut(s)	203, 261, 338
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	693, 717
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	693, 717
FspBI	CTAG	1 cut(s)	362
GlaI	GCGC	2 cut(s)	29, 640
GluI	GCNGC	2 cut(s)	693, 717
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	2 cut(s)	31, 54
HhaI	GCGC	2 cut(s)	30, 641
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	3 cut(s)	207, 265, 342
Hin6I	GCGC	2 cut(s)	28, 639
HinP1I	GCGC	2 cut(s)	28, 639
HincII	GTYRAC	1 cut(s)	581
HindII	GTYRAC	1 cut(s)	581
HinfI	GANTC	2 cut(s)	388, 517
HpaII	CCGG	2 cut(s)	31, 54
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	1 cut(s)	581
Hpy188I	TCNGA	6 cut(s)	214, 222, 478, 510, 601, 669
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	1 cut(s)	581
HpyAV	CCTTC	2 cut(s)	70, 185
HpyCH4IV	ACGT	2 cut(s)	209, 619
HpyCH4V	TGCA	7 cut(s)	207, 241, 265, 277, 384, 397, 533
HpyF3I	CTNAG	2 cut(s)	151, 676
HpySE526I	ACGT	2 cut(s)	209, 619
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	207, 265, 342
HspAI	GCGC	2 cut(s)	28, 639
Kzo9I	GATC	1 cut(s)	20
LmnI	GCTCC	3 cut(s)	56, 116, 636
Lsp1109I	GCAGC	2 cut(s)	679, 728
LweI	GCATC	2 cut(s)	358, 469
MaeI	CTAG	1 cut(s)	362
MaeII	ACGT	2 cut(s)	209, 619
MalI	GATC	1 cut(s)	22
MboI	GATC	1 cut(s)	20
MboII	GAAGA	4 cut(s)	116, 335, 512, 692
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	4 cut(s)	64, 528, 602, 611
MlyI	GAGTC	2 cut(s)	397, 511
MnlI	CCTC	6 cut(s)	3, 319, 358, 444, 503, 627
MseI	TTAA	2 cut(s)	426, 762
MspI	CCGG	2 cut(s)	31, 54
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MvnI	CGCG	2 cut(s)	28, 38
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	20
NlaIII	CATG	3 cut(s)	207, 265, 342
NlaIV	GGNNCC	4 cut(s)	22, 58, 157, 351
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	4
PkrI	GCNGC	2 cut(s)	694, 718
PleI	GAGTC	2 cut(s)	396, 511
PpsI	GAGTC	2 cut(s)	396, 511
PsiI	TTATAA	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	4 cut(s)	22, 58, 157, 351
PspPI	GGNCC	1 cut(s)	284
PstI	CTGCAG	1 cut(s)	243
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	1 cut(s)	654
RsaNI	GTAC	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	426, 762
SatI	GCNGC	2 cut(s)	693, 717
Sau3AI	GATC	1 cut(s)	20
Sau96I	GGNCC	1 cut(s)	284
SchI	GAGTC	2 cut(s)	397, 511
ScrFI	CCNGG	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	358, 469
SfcI	CTRYAG	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	68
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	4 cut(s)	64, 528, 602, 611
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	574
TaiI	ACGT	2 cut(s)	212, 622
TaqI	TCGA	3 cut(s)	5, 68, 74
TasI	AATT	4 cut(s)	64, 528, 602, 611
Tru1I	TTAA	2 cut(s)	426, 762
Tru9I	TTAA	2 cut(s)	426, 762
TseI	GCWGC	2 cut(s)	692, 716
TspDTI	ATGAA	1 cut(s)	702
TspGWI	ACGGA	1 cut(s)	36
XapI	RAATTY	1 cut(s)	611
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	362
ZraI	GACGTC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.